Experiment: R2A with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004212 and ABIE53_004213 are separated by 13 nucleotides ABIE53_004213 and ABIE53_004214 overlap by 4 nucleotides ABIE53_004214 and ABIE53_004215 are separated by 36 nucleotides
ABIE53_004212: ABIE53_004212 - 1-phosphofructokinase, at 385,965 to 387,020
_004212
ABIE53_004213: ABIE53_004213 - PTS system fructose-specific IIC component, at 387,034 to 388,869
_004213
ABIE53_004214: ABIE53_004214 - hypothetical protein, at 388,866 to 389,237
_004214
ABIE53_004215: ABIE53_004215 - cytochrome c biogenesis protein CcdA/thiol-disulfide isomerase/thioredoxin, at 389,274 to 391,175
_004215
Position (kb) 387
388
389 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 386.116 kb on - strand, within ABIE53_004212 at 386.116 kb on - strand, within ABIE53_004212 at 386.412 kb on + strand, within ABIE53_004212 at 386.412 kb on + strand, within ABIE53_004212 at 386.412 kb on + strand, within ABIE53_004212 at 386.634 kb on + strand, within ABIE53_004212 at 386.635 kb on - strand, within ABIE53_004212 at 386.635 kb on - strand, within ABIE53_004212 at 386.635 kb on - strand, within ABIE53_004212 at 386.635 kb on - strand, within ABIE53_004212 at 386.635 kb on - strand, within ABIE53_004212 at 386.635 kb on - strand, within ABIE53_004212 at 386.635 kb on - strand, within ABIE53_004212 at 386.635 kb on - strand, within ABIE53_004212 at 386.743 kb on - strand, within ABIE53_004212 at 386.743 kb on - strand, within ABIE53_004212 at 386.743 kb on - strand, within ABIE53_004212 at 386.743 kb on - strand, within ABIE53_004212 at 387.018 kb on + strand at 387.018 kb on + strand at 387.018 kb on + strand at 387.018 kb on + strand at 387.019 kb on - strand at 387.057 kb on - strand at 387.057 kb on - strand at 387.213 kb on - strand at 387.213 kb on - strand at 387.364 kb on - strand, within ABIE53_004213 at 387.615 kb on + strand, within ABIE53_004213 at 387.655 kb on + strand, within ABIE53_004213 at 387.655 kb on + strand, within ABIE53_004213 at 387.655 kb on + strand, within ABIE53_004213 at 387.655 kb on + strand, within ABIE53_004213 at 387.656 kb on - strand, within ABIE53_004213 at 387.656 kb on - strand, within ABIE53_004213 at 387.656 kb on - strand, within ABIE53_004213 at 387.952 kb on + strand, within ABIE53_004213 at 387.952 kb on + strand, within ABIE53_004213 at 387.952 kb on + strand, within ABIE53_004213 at 387.952 kb on + strand, within ABIE53_004213 at 387.952 kb on + strand, within ABIE53_004213 at 387.953 kb on - strand, within ABIE53_004213 at 387.953 kb on - strand, within ABIE53_004213 at 387.953 kb on - strand, within ABIE53_004213 at 387.953 kb on - strand, within ABIE53_004213 at 387.953 kb on - strand, within ABIE53_004213 at 387.953 kb on - strand, within ABIE53_004213 at 387.953 kb on - strand, within ABIE53_004213 at 387.954 kb on - strand, within ABIE53_004213 at 388.051 kb on + strand, within ABIE53_004213 at 388.051 kb on + strand, within ABIE53_004213 at 388.052 kb on - strand, within ABIE53_004213 at 388.060 kb on + strand, within ABIE53_004213 at 388.149 kb on + strand, within ABIE53_004213 at 388.172 kb on - strand, within ABIE53_004213 at 388.250 kb on + strand, within ABIE53_004213 at 388.250 kb on + strand, within ABIE53_004213 at 388.285 kb on + strand, within ABIE53_004213 at 388.285 kb on + strand, within ABIE53_004213 at 388.285 kb on + strand, within ABIE53_004213 at 388.285 kb on + strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.286 kb on - strand, within ABIE53_004213 at 388.432 kb on + strand, within ABIE53_004213 at 388.468 kb on + strand, within ABIE53_004213 at 388.469 kb on - strand, within ABIE53_004213 at 388.469 kb on - strand, within ABIE53_004213 at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.786 kb on + strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.787 kb on - strand at 388.842 kb on + strand at 388.842 kb on + strand at 388.843 kb on - strand at 388.843 kb on - strand at 389.032 kb on + strand, within ABIE53_004214 at 389.045 kb on + strand, within ABIE53_004214 at 389.072 kb on + strand, within ABIE53_004214 at 389.103 kb on + strand, within ABIE53_004214 at 389.103 kb on + strand, within ABIE53_004214 at 389.104 kb on - strand, within ABIE53_004214 at 389.104 kb on - strand, within ABIE53_004214 at 389.104 kb on - strand, within ABIE53_004214 at 389.197 kb on - strand, within ABIE53_004214 at 389.219 kb on + strand at 389.219 kb on + strand at 389.219 kb on + strand at 389.219 kb on + strand at 389.219 kb on + strand at 389.219 kb on + strand at 389.219 kb on + strand at 389.220 kb on - strand at 389.220 kb on - strand at 389.220 kb on - strand at 389.220 kb on - strand at 389.235 kb on + strand at 389.235 kb on + strand at 389.236 kb on - strand at 389.236 kb on - strand at 389.242 kb on + strand at 389.251 kb on - strand at 389.251 kb on - strand at 389.293 kb on + strand at 389.293 kb on + strand at 389.372 kb on - strand at 389.372 kb on - strand at 389.612 kb on + strand, within ABIE53_004215 at 389.613 kb on - strand, within ABIE53_004215 at 389.704 kb on + strand, within ABIE53_004215 at 389.705 kb on - strand, within ABIE53_004215 at 389.705 kb on - strand, within ABIE53_004215 at 389.705 kb on - strand, within ABIE53_004215 at 389.705 kb on - strand, within ABIE53_004215 at 389.705 kb on - strand, within ABIE53_004215 at 389.866 kb on + strand, within ABIE53_004215
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 200 mM remove 386,116 - ABIE53_004212 0.14 +0.8 386,116 - ABIE53_004212 0.14 -1.6 386,412 + ABIE53_004212 0.42 +1.6 386,412 + ABIE53_004212 0.42 -0.6 386,412 + ABIE53_004212 0.42 +2.2 386,634 + ABIE53_004212 0.63 -0.0 386,635 - ABIE53_004212 0.63 +0.6 386,635 - ABIE53_004212 0.63 -0.9 386,635 - ABIE53_004212 0.63 -0.4 386,635 - ABIE53_004212 0.63 -1.5 386,635 - ABIE53_004212 0.63 +0.2 386,635 - ABIE53_004212 0.63 -0.4 386,635 - ABIE53_004212 0.63 -1.4 386,635 - ABIE53_004212 0.63 -1.1 386,743 - ABIE53_004212 0.74 +0.1 386,743 - ABIE53_004212 0.74 -1.8 386,743 - ABIE53_004212 0.74 -1.5 386,743 - ABIE53_004212 0.74 -1.7 387,018 + -1.6 387,018 + -0.5 387,018 + -0.5 387,018 + -1.4 387,019 - +0.9 387,057 - +1.6 387,057 - -0.2 387,213 - +1.6 387,213 - -0.3 387,364 - ABIE53_004213 0.18 -0.8 387,615 + ABIE53_004213 0.32 -0.5 387,655 + ABIE53_004213 0.34 -1.6 387,655 + ABIE53_004213 0.34 -1.3 387,655 + ABIE53_004213 0.34 -0.6 387,655 + ABIE53_004213 0.34 -1.1 387,656 - ABIE53_004213 0.34 -1.4 387,656 - ABIE53_004213 0.34 -1.5 387,656 - ABIE53_004213 0.34 +0.6 387,952 + ABIE53_004213 0.50 -0.1 387,952 + ABIE53_004213 0.50 +2.2 387,952 + ABIE53_004213 0.50 -0.1 387,952 + ABIE53_004213 0.50 -1.3 387,952 + ABIE53_004213 0.50 +0.6 387,953 - ABIE53_004213 0.50 -0.7 387,953 - ABIE53_004213 0.50 -0.5 387,953 - ABIE53_004213 0.50 +0.1 387,953 - ABIE53_004213 0.50 +0.3 387,953 - ABIE53_004213 0.50 -1.8 387,953 - ABIE53_004213 0.50 -0.5 387,953 - ABIE53_004213 0.50 -2.3 387,954 - ABIE53_004213 0.50 +1.4 388,051 + ABIE53_004213 0.55 +0.2 388,051 + ABIE53_004213 0.55 -0.1 388,052 - ABIE53_004213 0.55 -1.9 388,060 + ABIE53_004213 0.56 -0.9 388,149 + ABIE53_004213 0.61 -0.4 388,172 - ABIE53_004213 0.62 +0.7 388,250 + ABIE53_004213 0.66 -1.0 388,250 + ABIE53_004213 0.66 -0.7 388,285 + ABIE53_004213 0.68 -1.5 388,285 + ABIE53_004213 0.68 +0.4 388,285 + ABIE53_004213 0.68 -1.3 388,285 + ABIE53_004213 0.68 -1.2 388,286 - ABIE53_004213 0.68 -0.9 388,286 - ABIE53_004213 0.68 +0.8 388,286 - ABIE53_004213 0.68 -1.2 388,286 - ABIE53_004213 0.68 -0.0 388,286 - ABIE53_004213 0.68 -1.7 388,286 - ABIE53_004213 0.68 -0.4 388,432 + ABIE53_004213 0.76 -2.7 388,468 + ABIE53_004213 0.78 +1.6 388,469 - ABIE53_004213 0.78 -0.2 388,469 - ABIE53_004213 0.78 +0.8 388,786 + +1.8 388,786 + -0.8 388,786 + -1.5 388,786 + -0.8 388,786 + +0.6 388,786 + +0.9 388,786 + -0.7 388,786 + +2.2 388,786 + -0.2 388,786 + -0.9 388,786 + +1.2 388,786 + -1.2 388,786 + -0.5 388,786 + -0.6 388,786 + +1.2 388,787 - -2.3 388,787 - -0.2 388,787 - -0.3 388,787 - -0.3 388,787 - -0.2 388,787 - -1.4 388,787 - +0.2 388,787 - -1.2 388,787 - -0.8 388,787 - -0.2 388,787 - -1.5 388,787 - -0.6 388,787 - -1.4 388,787 - +0.0 388,842 + -0.5 388,842 + -0.7 388,843 - -1.5 388,843 - +0.8 389,032 + ABIE53_004214 0.45 +0.6 389,045 + ABIE53_004214 0.48 -0.4 389,072 + ABIE53_004214 0.55 -2.0 389,103 + ABIE53_004214 0.64 -0.0 389,103 + ABIE53_004214 0.64 -1.2 389,104 - ABIE53_004214 0.64 -0.4 389,104 - ABIE53_004214 0.64 +0.3 389,104 - ABIE53_004214 0.64 +0.2 389,197 - ABIE53_004214 0.89 -1.0 389,219 + +1.2 389,219 + +0.2 389,219 + -0.8 389,219 + -1.1 389,219 + +1.0 389,219 + -0.1 389,219 + +0.2 389,220 - +0.2 389,220 - +1.2 389,220 - +0.2 389,220 - +1.8 389,235 + -0.5 389,235 + -0.5 389,236 - -0.4 389,236 - +2.9 389,242 + -0.7 389,251 - -0.5 389,251 - -0.4 389,293 + +0.4 389,293 + -0.3 389,372 - +0.0 389,372 - +0.2 389,612 + ABIE53_004215 0.18 -1.2 389,613 - ABIE53_004215 0.18 -0.5 389,704 + ABIE53_004215 0.23 +0.5 389,705 - ABIE53_004215 0.23 -0.6 389,705 - ABIE53_004215 0.23 -0.7 389,705 - ABIE53_004215 0.23 +0.2 389,705 - ABIE53_004215 0.23 -1.0 389,705 - ABIE53_004215 0.23 -0.8 389,866 + ABIE53_004215 0.31 +0.7
Or see this region's nucleotide sequence