Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_005912

Experiment: R2A with Chloride 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloride 200 mM
2,227,240	+				+0.1
2,227,241	-				-0.5
2,227,241	-				+0.1
2,227,317	+				-2.1
2,227,318	-				+0.2
2,227,430	-		ABIE53_005911	0.17	-0.1
2,227,577	-		ABIE53_005911	0.34	+0.4
2,227,578	+		ABIE53_005911	0.34	-0.9
2,227,578	+		ABIE53_005911	0.34	+0.8
2,227,579	-		ABIE53_005911	0.34	+1.6
2,227,579	-		ABIE53_005911	0.34	-0.6
2,227,579	-		ABIE53_005911	0.34	+0.7
2,227,579	-		ABIE53_005911	0.34	+2.2
2,227,666	+		ABIE53_005911	0.43	+0.7
2,227,667	-		ABIE53_005911	0.44	-0.4
2,227,722	+		ABIE53_005911	0.50	+0.6
2,227,723	-		ABIE53_005911	0.50	+1.1
2,227,766	+		ABIE53_005911	0.55	-1.5
2,227,811	-		ABIE53_005911	0.60	+2.9
2,227,852	+		ABIE53_005911	0.64	-1.6
2,227,852	+		ABIE53_005911	0.64	-0.5
2,227,852	+		ABIE53_005911	0.64	-1.4
2,227,852	+		ABIE53_005911	0.64	-0.2
2,227,852	+		ABIE53_005911	0.64	+1.4
2,227,852	+		ABIE53_005911	0.64	-2.6
2,227,853	-		ABIE53_005911	0.64	-1.5
2,227,853	-		ABIE53_005911	0.64	+1.1
2,227,854	+		ABIE53_005911	0.64	-0.3
2,227,854	+		ABIE53_005911	0.64	+0.9
2,227,854	+		ABIE53_005911	0.64	+0.6
2,227,854	+		ABIE53_005911	0.64	-1.1
2,227,854	+		ABIE53_005911	0.64	-1.9
2,227,854	+		ABIE53_005911	0.64	+0.4
2,227,854	+		ABIE53_005911	0.64	+0.8
2,227,854	+		ABIE53_005911	0.64	-0.9
2,227,854	+		ABIE53_005911	0.64	-0.2
2,227,855	-		ABIE53_005911	0.65	-0.9
2,227,855	-		ABIE53_005911	0.65	+0.9
2,227,855	-		ABIE53_005911	0.65	+0.9
2,227,855	-		ABIE53_005911	0.65	+0.5
2,227,855	-		ABIE53_005911	0.65	+0.8
2,227,855	-		ABIE53_005911	0.65	+0.8
2,227,855	-		ABIE53_005911	0.65	-0.2
2,227,927	+		ABIE53_005911	0.73	-0.2
2,227,927	+		ABIE53_005911	0.73	-0.6
2,227,927	+		ABIE53_005911	0.73	-0.2
2,227,927	+		ABIE53_005911	0.73	-0.3
2,227,927	+		ABIE53_005911	0.73	-0.6
2,227,927	+		ABIE53_005911	0.73	+0.4
2,227,927	+		ABIE53_005911	0.73	-1.6
2,227,928	-		ABIE53_005911	0.73	+0.0
2,227,928	-		ABIE53_005911	0.73	+1.8
2,227,929	+		ABIE53_005911	0.73	-1.3
2,227,929	+		ABIE53_005911	0.73	+0.1
2,227,929	+		ABIE53_005911	0.73	-0.6
2,227,929	+		ABIE53_005911	0.73	-1.2
2,227,929	+		ABIE53_005911	0.73	+1.1
2,227,929	+		ABIE53_005911	0.73	+1.4
2,227,930	-		ABIE53_005911	0.73	-0.3
2,227,930	-		ABIE53_005911	0.73	-0.1
2,227,930	-		ABIE53_005911	0.73	+0.0
2,227,930	-		ABIE53_005911	0.73	+1.1
2,227,930	-		ABIE53_005911	0.73	-0.6
2,227,935	+		ABIE53_005911	0.73	-0.1
2,227,936	-		ABIE53_005911	0.74	+1.1
2,227,988	-		ABIE53_005911	0.79	+0.1
2,227,988	-		ABIE53_005911	0.79	+2.0
2,228,109	+				+0.6
2,228,150	+				-0.2
2,228,150	+				+1.3
2,228,150	+				-0.2
2,228,151	-				+0.8
2,228,161	+				-0.5
2,228,161	+				-0.2
2,228,371	-				+0.9
2,228,478	+		ABIE53_005912	0.13	+0.6
2,228,512	-		ABIE53_005912	0.15	+0.7
2,228,571	+		ABIE53_005912	0.18	-0.7
2,228,598	+		ABIE53_005912	0.20	+1.1
2,228,598	+		ABIE53_005912	0.20	+0.3
2,228,656	+		ABIE53_005912	0.23	+0.4
2,228,656	+		ABIE53_005912	0.23	-0.1
2,228,656	+		ABIE53_005912	0.23	+1.8
2,228,659	+		ABIE53_005912	0.23	-0.9
2,228,660	-		ABIE53_005912	0.23	+1.4
2,228,743	-		ABIE53_005912	0.28	+0.5
2,228,751	+		ABIE53_005912	0.28	+1.1
2,228,751	+		ABIE53_005912	0.28	-1.3
2,228,752	-		ABIE53_005912	0.28	+0.6
2,228,752	-		ABIE53_005912	0.28	+0.4
2,228,802	+		ABIE53_005912	0.31	-0.5
2,228,802	+		ABIE53_005912	0.31	-0.3
2,229,253	-		ABIE53_005912	0.56	+0.5
2,229,258	+		ABIE53_005912	0.56	-0.2
2,229,258	+		ABIE53_005912	0.56	-2.2
2,229,282	+		ABIE53_005912	0.57	-1.4
2,229,283	-		ABIE53_005912	0.58	+1.8
2,229,369	+		ABIE53_005912	0.62	-0.7
2,229,369	+		ABIE53_005912	0.62	-0.1
2,229,370	-		ABIE53_005912	0.62	+3.4
2,229,370	-		ABIE53_005912	0.62	-0.8
2,229,486	+		ABIE53_005912	0.69	-1.5
2,229,501	+		ABIE53_005912	0.69	+0.1
2,229,502	-		ABIE53_005912	0.70	+0.6
2,229,534	+		ABIE53_005912	0.71	-0.7
2,229,534	+		ABIE53_005912	0.71	+1.8
2,229,535	-		ABIE53_005912	0.71	+1.8
2,229,596	+		ABIE53_005912	0.75	-1.0
2,229,654	+		ABIE53_005912	0.78	-0.7
2,229,654	+		ABIE53_005912	0.78	+0.4
2,229,655	-		ABIE53_005912	0.78	-1.2
2,229,655	-		ABIE53_005912	0.78	-1.4
2,229,655	-		ABIE53_005912	0.78	-1.9
2,229,781	+		ABIE53_005912	0.85	-1.2
2,229,834	+		ABIE53_005912	0.88	+1.1
2,229,847	-		ABIE53_005912	0.88	+0.8
2,229,952	+				+2.2
2,229,953	-				+1.4
2,230,092	-				+1.4
2,230,165	+				+1.5
2,230,165	+				+0.6
2,230,165	+				+0.1
2,230,166	-				-0.1
2,230,166	-				-0.1
2,230,166	-				+0.2
2,230,211	-				+1.8
2,230,216	+				+0.4
2,230,216	+				-1.1
2,230,217	-				-0.4
2,230,296	-				+1.4
2,230,336	-				+0.7
2,230,336	-				-2.7
2,230,396	+				-2.4
2,230,422	+				+0.5
2,230,423	-				-0.7
2,230,423	-				+1.8
2,230,423	-				+0.4
2,230,563	+				-1.5
2,230,778	-		ABIE53_005913	0.13	+0.6
2,230,778	-		ABIE53_005913	0.13	+0.6
2,230,778	-		ABIE53_005913	0.13	+1.1
2,230,778	-		ABIE53_005913	0.13	-1.2
2,230,778	-		ABIE53_005913	0.13	+1.8
2,230,778	-		ABIE53_005913	0.13	+1.1
2,230,781	+		ABIE53_005913	0.13	-0.9
2,230,781	+		ABIE53_005913	0.13	+0.7
2,230,782	-		ABIE53_005913	0.13	-1.1
2,230,782	-		ABIE53_005913	0.13	+0.6
2,230,861	+		ABIE53_005913	0.15	-1.5
2,230,861	+		ABIE53_005913	0.15	+0.3
2,230,862	-		ABIE53_005913	0.15	-0.3
2,230,953	+		ABIE53_005913	0.18	-0.1
2,230,953	+		ABIE53_005913	0.18	+0.1
2,230,953	+		ABIE53_005913	0.18	+2.4
2,230,953	+		ABIE53_005913	0.18	-0.2
2,230,953	+		ABIE53_005913	0.18	-0.1
2,230,953	+		ABIE53_005913	0.18	+1.1
2,230,954	-		ABIE53_005913	0.18	-0.1
2,230,993	+		ABIE53_005913	0.19	+0.2
2,230,994	-		ABIE53_005913	0.19	+1.5