Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003905

Experiment: R2A with Propan-1-ol 13 g/L

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_003904 and ABIE53_003905 are separated by 378 nucleotidesABIE53_003905 and ABIE53_003906 are separated by 59 nucleotidesABIE53_003906 and ABIE53_003907 overlap by 4 nucleotides ABIE53_003904: ABIE53_003904 - 4-hydroxy-3-polyprenylbenzoate decarboxylase, at 43,549 to 44,127 _003904 ABIE53_003905: ABIE53_003905 - salicylate hydroxylase, at 44,506 to 45,543 _003905 ABIE53_003906: ABIE53_003906 - catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme, at 45,603 to 46,145 _003906 ABIE53_003907: ABIE53_003907 - fumarylacetoacetase, at 46,142 to 47,512 _003907 Position (kb) 44 45 46Strain fitness (log2 ratio) -2 -1 0 1 2 3at 43.525 kb on - strandat 43.548 kb on + strandat 43.549 kb on - strandat 43.554 kb on + strandat 43.554 kb on + strandat 43.554 kb on + strandat 43.554 kb on + strandat 43.555 kb on - strandat 43.556 kb on + strandat 43.556 kb on + strandat 43.556 kb on + strandat 43.556 kb on + strandat 43.557 kb on - strandat 43.557 kb on - strandat 43.557 kb on - strandat 43.557 kb on - strandat 43.557 kb on - strandat 43.613 kb on + strand, within ABIE53_003904at 43.613 kb on + strand, within ABIE53_003904at 43.613 kb on + strand, within ABIE53_003904at 43.613 kb on + strand, within ABIE53_003904at 43.613 kb on + strand, within ABIE53_003904at 43.613 kb on + strand, within ABIE53_003904at 43.613 kb on + strand, within ABIE53_003904at 43.613 kb on + strand, within ABIE53_003904at 43.613 kb on + strand, within ABIE53_003904at 43.614 kb on - strand, within ABIE53_003904at 43.614 kb on - strand, within ABIE53_003904at 43.614 kb on - strand, within ABIE53_003904at 43.615 kb on + strand, within ABIE53_003904at 43.615 kb on + strand, within ABIE53_003904at 43.615 kb on + strand, within ABIE53_003904at 43.615 kb on + strand, within ABIE53_003904at 43.615 kb on + strand, within ABIE53_003904at 43.615 kb on + strand, within ABIE53_003904at 43.616 kb on - strand, within ABIE53_003904at 43.616 kb on - strand, within ABIE53_003904at 44.023 kb on + strand, within ABIE53_003904at 44.024 kb on - strand, within ABIE53_003904at 44.125 kb on + strandat 44.125 kb on + strandat 44.125 kb on + strandat 44.126 kb on - strandat 44.126 kb on - strandat 44.126 kb on - strandat 44.126 kb on - strandat 44.126 kb on - strandat 44.126 kb on - strandat 44.126 kb on - strandat 44.126 kb on - strandat 44.126 kb on - strandat 44.126 kb on - strandat 44.189 kb on - strandat 44.283 kb on + strandat 44.333 kb on - strandat 44.363 kb on - strandat 44.363 kb on - strandat 44.367 kb on - strandat 44.638 kb on + strand, within ABIE53_003905at 44.639 kb on - strand, within ABIE53_003905at 44.639 kb on - strand, within ABIE53_003905at 44.639 kb on - strand, within ABIE53_003905at 44.639 kb on - strand, within ABIE53_003905at 44.651 kb on - strand, within ABIE53_003905at 44.736 kb on + strand, within ABIE53_003905at 44.736 kb on + strand, within ABIE53_003905at 44.736 kb on + strand, within ABIE53_003905at 44.737 kb on - strand, within ABIE53_003905at 44.737 kb on - strand, within ABIE53_003905at 44.993 kb on - strand, within ABIE53_003905at 45.158 kb on - strand, within ABIE53_003905at 45.159 kb on + strand, within ABIE53_003905at 45.159 kb on + strand, within ABIE53_003905at 45.159 kb on + strand, within ABIE53_003905at 45.160 kb on - strand, within ABIE53_003905at 45.316 kb on + strand, within ABIE53_003905at 45.349 kb on + strand, within ABIE53_003905at 45.349 kb on + strand, within ABIE53_003905at 45.350 kb on - strand, within ABIE53_003905at 45.457 kb on + strandat 45.457 kb on + strandat 45.499 kb on + strandat 45.500 kb on - strandat 45.517 kb on + strandat 45.518 kb on - strandat 45.518 kb on - strandat 45.589 kb on + strandat 45.694 kb on - strand, within ABIE53_003906at 45.762 kb on + strand, within ABIE53_003906at 45.763 kb on - strand, within ABIE53_003906at 45.763 kb on - strand, within ABIE53_003906at 45.771 kb on + strand, within ABIE53_003906at 45.771 kb on + strand, within ABIE53_003906at 45.861 kb on - strand, within ABIE53_003906at 46.027 kb on + strand, within ABIE53_003906at 46.027 kb on + strand, within ABIE53_003906at 46.028 kb on - strand, within ABIE53_003906at 46.028 kb on - strand, within ABIE53_003906at 46.067 kb on + strand, within ABIE53_003906at 46.068 kb on - strand, within ABIE53_003906at 46.068 kb on - strand, within ABIE53_003906at 46.068 kb on - strand, within ABIE53_003906at 46.069 kb on - strand, within ABIE53_003906at 46.381 kb on - strand, within ABIE53_003907

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Propan-1-ol 13 g/L
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43,525 - +0.7
43,548 + +1.8
43,549 - +2.0
43,554 + +0.1
43,554 + +2.5
43,554 + +0.5
43,554 + +0.7
43,555 - -0.1
43,556 + -0.6
43,556 + +0.6
43,556 + +0.3
43,556 + +0.0
43,557 - -0.1
43,557 - -0.1
43,557 - +0.7
43,557 - -0.9
43,557 - +1.3
43,613 + ABIE53_003904 0.11 -1.6
43,613 + ABIE53_003904 0.11 +0.4
43,613 + ABIE53_003904 0.11 -2.6
43,613 + ABIE53_003904 0.11 +0.4
43,613 + ABIE53_003904 0.11 +1.2
43,613 + ABIE53_003904 0.11 +3.0
43,613 + ABIE53_003904 0.11 +0.3
43,613 + ABIE53_003904 0.11 -0.1
43,613 + ABIE53_003904 0.11 +0.9
43,614 - ABIE53_003904 0.11 -0.1
43,614 - ABIE53_003904 0.11 -0.0
43,614 - ABIE53_003904 0.11 +1.7
43,615 + ABIE53_003904 0.11 +1.8
43,615 + ABIE53_003904 0.11 -0.2
43,615 + ABIE53_003904 0.11 +1.2
43,615 + ABIE53_003904 0.11 -1.0
43,615 + ABIE53_003904 0.11 +1.0
43,615 + ABIE53_003904 0.11 -0.8
43,616 - ABIE53_003904 0.12 -0.0
43,616 - ABIE53_003904 0.12 +0.1
44,023 + ABIE53_003904 0.82 +1.0
44,024 - ABIE53_003904 0.82 +1.1
44,125 + +1.5
44,125 + +3.0
44,125 + +0.1
44,126 - +1.7
44,126 - +1.7
44,126 - +0.7
44,126 - +1.6
44,126 - +0.3
44,126 - +0.5
44,126 - +0.1
44,126 - -0.1
44,126 - +0.3
44,126 - +1.9
44,189 - +2.2
44,283 + +1.7
44,333 - +0.8
44,363 - +1.2
44,363 - +0.6
44,367 - +0.7
44,638 + ABIE53_003905 0.13 -0.5
44,639 - ABIE53_003905 0.13 +0.5
44,639 - ABIE53_003905 0.13 +0.4
44,639 - ABIE53_003905 0.13 -0.3
44,639 - ABIE53_003905 0.13 +0.6
44,651 - ABIE53_003905 0.14 +0.1
44,736 + ABIE53_003905 0.22 -1.4
44,736 + ABIE53_003905 0.22 +1.6
44,736 + ABIE53_003905 0.22 +0.1
44,737 - ABIE53_003905 0.22 +0.8
44,737 - ABIE53_003905 0.22 -1.3
44,993 - ABIE53_003905 0.47 -1.3
45,158 - ABIE53_003905 0.63 +1.8
45,159 + ABIE53_003905 0.63 +3.6
45,159 + ABIE53_003905 0.63 +0.7
45,159 + ABIE53_003905 0.63 +0.7
45,160 - ABIE53_003905 0.63 +1.0
45,316 + ABIE53_003905 0.78 +0.4
45,349 + ABIE53_003905 0.81 +1.6
45,349 + ABIE53_003905 0.81 -0.8
45,350 - ABIE53_003905 0.81 +1.5
45,457 + -0.3
45,457 + +1.4
45,499 + -2.3
45,500 - -0.3
45,517 + +0.5
45,518 - -0.3
45,518 - -0.8
45,589 + +0.1
45,694 - ABIE53_003906 0.17 +2.5
45,762 + ABIE53_003906 0.29 -1.3
45,763 - ABIE53_003906 0.29 +0.9
45,763 - ABIE53_003906 0.29 -0.5
45,771 + ABIE53_003906 0.31 +0.7
45,771 + ABIE53_003906 0.31 -0.3
45,861 - ABIE53_003906 0.48 -1.0
46,027 + ABIE53_003906 0.78 -1.3
46,027 + ABIE53_003906 0.78 +0.4
46,028 - ABIE53_003906 0.78 -0.6
46,028 - ABIE53_003906 0.78 -0.1
46,067 + ABIE53_003906 0.85 +0.6
46,068 - ABIE53_003906 0.86 +0.2
46,068 - ABIE53_003906 0.86 +1.6
46,068 - ABIE53_003906 0.86 -0.2
46,069 - ABIE53_003906 0.86 +1.0
46,381 - ABIE53_003907 0.17 -1.2

Or see this region's nucleotide sequence