Experiment: R2A with Propan-1-ol 13 g/L
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000329 and ABIE53_000330 are separated by 105 nucleotides ABIE53_000330 and ABIE53_000331 are separated by 243 nucleotides ABIE53_000331 and ABIE53_000332 are separated by 171 nucleotides
ABIE53_000329: ABIE53_000329 - hypothetical protein, at 347,467 to 347,799
_000329
ABIE53_000330: ABIE53_000330 - hypothetical protein, at 347,905 to 348,066
_000330
ABIE53_000331: ABIE53_000331 - integrase, at 348,310 to 349,521
_000331
ABIE53_000332: ABIE53_000332 - tRNA modification GTPase, at 349,693 to 351,087
_000332
Position (kb) 348
349
350 Strain fitness (log2 ratio) -2
-1
0
1
2 at 347.354 kb on + strand at 347.355 kb on - strand at 347.355 kb on - strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.359 kb on - strand at 347.359 kb on - strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.396 kb on - strand at 347.411 kb on + strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.477 kb on + strand at 347.478 kb on - strand at 347.478 kb on - strand at 347.478 kb on - strand at 347.606 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.647 kb on + strand, within ABIE53_000329 at 347.648 kb on - strand, within ABIE53_000329 at 347.648 kb on - strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.695 kb on + strand, within ABIE53_000329 at 347.716 kb on + strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.722 kb on + strand, within ABIE53_000329 at 347.722 kb on + strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.731 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.774 kb on - strand at 347.779 kb on + strand at 347.779 kb on + strand at 347.779 kb on + strand at 347.780 kb on - strand at 347.780 kb on - strand at 347.780 kb on - strand at 347.780 kb on - strand at 347.790 kb on + strand at 347.790 kb on + strand at 347.790 kb on + strand at 347.790 kb on + strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.798 kb on - strand at 347.798 kb on - strand at 347.798 kb on - strand at 347.805 kb on - strand at 347.805 kb on - strand at 347.889 kb on + strand at 347.889 kb on + strand at 347.890 kb on - strand at 347.899 kb on + strand at 347.899 kb on + strand at 347.900 kb on - strand at 347.934 kb on - strand, within ABIE53_000330 at 347.985 kb on - strand, within ABIE53_000330 at 348.031 kb on - strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.045 kb on - strand, within ABIE53_000330 at 348.045 kb on - strand, within ABIE53_000330 at 348.045 kb on - strand, within ABIE53_000330 at 348.105 kb on + strand at 348.105 kb on + strand at 348.106 kb on - strand at 348.106 kb on - strand at 348.106 kb on - strand at 348.106 kb on - strand at 348.143 kb on + strand at 348.144 kb on - strand at 348.182 kb on + strand at 348.183 kb on - strand at 348.253 kb on + strand at 348.683 kb on + strand, within ABIE53_000331 at 348.684 kb on - strand, within ABIE53_000331 at 348.684 kb on - strand, within ABIE53_000331 at 348.684 kb on - strand, within ABIE53_000331 at 348.980 kb on + strand, within ABIE53_000331 at 348.980 kb on + strand, within ABIE53_000331 at 348.980 kb on + strand, within ABIE53_000331 at 348.981 kb on - strand, within ABIE53_000331 at 348.981 kb on - strand, within ABIE53_000331 at 348.981 kb on - strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.986 kb on + strand, within ABIE53_000331 at 348.987 kb on - strand, within ABIE53_000331 at 348.987 kb on - strand, within ABIE53_000331 at 349.011 kb on + strand, within ABIE53_000331 at 349.012 kb on - strand, within ABIE53_000331 at 349.154 kb on + strand, within ABIE53_000331 at 349.155 kb on - strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.190 kb on + strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.191 kb on - strand, within ABIE53_000331 at 349.293 kb on - strand, within ABIE53_000331 at 349.454 kb on + strand at 349.454 kb on + strand at 349.455 kb on - strand at 349.660 kb on - strand at 349.672 kb on + strand at 349.673 kb on - strand at 349.673 kb on - strand at 350.162 kb on - strand, within ABIE53_000332 at 350.162 kb on - strand, within ABIE53_000332
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Propan-1-ol 13 g/L remove 347,354 + -0.1 347,355 - -0.7 347,355 - -0.4 347,358 + -0.3 347,358 + -0.1 347,358 + +0.1 347,358 + +0.6 347,359 - -0.4 347,359 - -0.2 347,376 + +0.4 347,376 + -1.3 347,376 + +0.7 347,376 + -0.5 347,377 - -0.2 347,377 - -0.1 347,377 - -1.8 347,377 - +0.4 347,377 - -0.5 347,384 + -1.6 347,384 + -0.9 347,384 + -0.5 347,384 + -0.5 347,384 + +0.2 347,384 + -1.3 347,384 + +0.1 347,384 + -0.3 347,384 + +1.2 347,384 + -0.2 347,384 + +0.1 347,385 - -0.3 347,385 - -0.2 347,385 - -1.3 347,385 - +0.3 347,385 - -1.1 347,385 - -0.6 347,385 - -0.1 347,385 - +0.1 347,385 - -0.6 347,396 - -0.5 347,411 + -1.8 347,412 - -0.6 347,412 - -2.3 347,412 - -0.1 347,412 - +0.1 347,412 - +0.3 347,412 - -2.5 347,412 - -0.6 347,477 + -0.0 347,478 - -0.2 347,478 - -1.1 347,478 - +0.5 347,606 + ABIE53_000329 0.42 +0.0 347,632 + ABIE53_000329 0.50 +0.5 347,632 + ABIE53_000329 0.50 +1.5 347,632 + ABIE53_000329 0.50 -0.9 347,632 + ABIE53_000329 0.50 -0.3 347,632 + ABIE53_000329 0.50 -1.8 347,633 - ABIE53_000329 0.50 -1.8 347,633 - ABIE53_000329 0.50 -0.8 347,633 - ABIE53_000329 0.50 -0.5 347,647 + ABIE53_000329 0.54 -1.6 347,648 - ABIE53_000329 0.54 +0.1 347,648 - ABIE53_000329 0.54 -1.7 347,677 + ABIE53_000329 0.63 -0.4 347,677 + ABIE53_000329 0.63 +0.1 347,677 + ABIE53_000329 0.63 -1.2 347,678 - ABIE53_000329 0.63 -0.5 347,678 - ABIE53_000329 0.63 -0.1 347,678 - ABIE53_000329 0.63 +0.1 347,678 - ABIE53_000329 0.63 -1.1 347,695 + ABIE53_000329 0.68 -0.3 347,716 + ABIE53_000329 0.75 +2.5 347,717 - ABIE53_000329 0.75 -0.4 347,717 - ABIE53_000329 0.75 +1.0 347,717 - ABIE53_000329 0.75 -1.1 347,717 - ABIE53_000329 0.75 -1.0 347,722 + ABIE53_000329 0.77 -0.7 347,722 + ABIE53_000329 0.77 +0.1 347,723 - ABIE53_000329 0.77 +0.6 347,723 - ABIE53_000329 0.77 +0.3 347,723 - ABIE53_000329 0.77 -1.8 347,723 - ABIE53_000329 0.77 +0.6 347,731 + ABIE53_000329 0.79 -0.8 347,743 + ABIE53_000329 0.83 -0.0 347,743 + ABIE53_000329 0.83 -0.6 347,743 + ABIE53_000329 0.83 -0.9 347,743 + ABIE53_000329 0.83 +1.5 347,743 + ABIE53_000329 0.83 -0.5 347,743 + ABIE53_000329 0.83 +0.4 347,743 + ABIE53_000329 0.83 -0.3 347,744 - ABIE53_000329 0.83 +0.9 347,744 - ABIE53_000329 0.83 -0.5 347,744 - ABIE53_000329 0.83 +0.3 347,744 - ABIE53_000329 0.83 +0.5 347,744 - ABIE53_000329 0.83 -0.5 347,744 - ABIE53_000329 0.83 -0.1 347,744 - ABIE53_000329 0.83 -0.4 347,744 - ABIE53_000329 0.83 -0.0 347,744 - ABIE53_000329 0.83 -1.6 347,744 - ABIE53_000329 0.83 -0.0 347,773 + -0.4 347,773 + -1.6 347,773 + -0.1 347,773 + +0.4 347,773 + -1.0 347,773 + -0.3 347,774 - +0.2 347,779 + +1.3 347,779 + +0.6 347,779 + -0.2 347,780 - -0.9 347,780 - -0.5 347,780 - -0.4 347,780 - -0.6 347,790 + -0.2 347,790 + -0.2 347,790 + -0.1 347,790 + +1.2 347,791 - +0.8 347,791 - -1.0 347,791 - -0.2 347,791 - -0.4 347,791 - -0.2 347,791 - -0.2 347,791 - -2.2 347,797 + +0.1 347,797 + +2.2 347,797 + -0.4 347,797 + -0.9 347,797 + -0.2 347,797 + -0.5 347,798 - -0.1 347,798 - -0.6 347,798 - -1.5 347,805 - -0.8 347,805 - +0.9 347,889 + -0.9 347,889 + -0.5 347,890 - +0.0 347,899 + -0.4 347,899 + +0.2 347,900 - -0.0 347,934 - ABIE53_000330 0.18 +0.3 347,985 - ABIE53_000330 0.49 -1.2 348,031 - ABIE53_000330 0.78 -0.9 348,044 + ABIE53_000330 0.86 -0.3 348,044 + ABIE53_000330 0.86 -0.6 348,044 + ABIE53_000330 0.86 +0.1 348,044 + ABIE53_000330 0.86 +0.2 348,045 - ABIE53_000330 0.86 +0.3 348,045 - ABIE53_000330 0.86 -0.3 348,045 - ABIE53_000330 0.86 -0.2 348,105 + +0.1 348,105 + -0.3 348,106 - +0.3 348,106 - -0.5 348,106 - -0.2 348,106 - -0.2 348,143 + -1.1 348,144 - +0.4 348,182 + +1.2 348,183 - +0.5 348,253 + -0.9 348,683 + ABIE53_000331 0.31 +0.9 348,684 - ABIE53_000331 0.31 -0.4 348,684 - ABIE53_000331 0.31 -0.5 348,684 - ABIE53_000331 0.31 +0.1 348,980 + ABIE53_000331 0.55 -0.2 348,980 + ABIE53_000331 0.55 -0.4 348,980 + ABIE53_000331 0.55 -0.1 348,981 - ABIE53_000331 0.55 -1.0 348,981 - ABIE53_000331 0.55 +0.1 348,981 - ABIE53_000331 0.55 -0.1 348,986 + ABIE53_000331 0.56 -0.9 348,986 + ABIE53_000331 0.56 +0.1 348,986 + ABIE53_000331 0.56 -0.6 348,986 + ABIE53_000331 0.56 -0.3 348,986 + ABIE53_000331 0.56 -0.2 348,986 + ABIE53_000331 0.56 +0.8 348,986 + ABIE53_000331 0.56 -0.9 348,987 - ABIE53_000331 0.56 -0.0 348,987 - ABIE53_000331 0.56 -0.2 349,011 + ABIE53_000331 0.58 -0.3 349,012 - ABIE53_000331 0.58 -0.1 349,154 + ABIE53_000331 0.70 +0.2 349,155 - ABIE53_000331 0.70 -0.4 349,190 + ABIE53_000331 0.73 +0.7 349,190 + ABIE53_000331 0.73 +0.1 349,190 + ABIE53_000331 0.73 +0.7 349,190 + ABIE53_000331 0.73 -0.1 349,190 + ABIE53_000331 0.73 -1.3 349,190 + ABIE53_000331 0.73 +0.9 349,190 + ABIE53_000331 0.73 -0.0 349,190 + ABIE53_000331 0.73 +0.3 349,190 + ABIE53_000331 0.73 +2.1 349,190 + ABIE53_000331 0.73 +0.6 349,191 - ABIE53_000331 0.73 -0.6 349,191 - ABIE53_000331 0.73 -0.8 349,191 - ABIE53_000331 0.73 -0.6 349,191 - ABIE53_000331 0.73 -0.5 349,191 - ABIE53_000331 0.73 -0.4 349,191 - ABIE53_000331 0.73 -0.2 349,293 - ABIE53_000331 0.81 +1.0 349,454 + +1.1 349,454 + +1.9 349,455 - +1.4 349,660 - -0.5 349,672 + -2.1 349,673 - -0.1 349,673 - -0.1 350,162 - ABIE53_000332 0.34 +0.9 350,162 - ABIE53_000332 0.34 +0.9
Or see this region's nucleotide sequence