Experiment: R2A with Propan-1-ol 13 g/L
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003916 and ABIE53_003917 are separated by 135 nucleotides ABIE53_003917 and ABIE53_003918 are separated by 108 nucleotides
ABIE53_003916: ABIE53_003916 - anti-sigma factor RsiW, at 55,879 to 56,781
_003916
ABIE53_003917: ABIE53_003917 - catalase, at 56,917 to 58,005
_003917
ABIE53_003918: ABIE53_003918 - anti-sigma factor RsiW, at 58,114 to 59,100
_003918
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 55.953 kb on + strand at 55.953 kb on + strand at 55.953 kb on + strand at 55.953 kb on + strand at 55.953 kb on + strand at 55.953 kb on + strand at 55.953 kb on + strand at 55.954 kb on - strand at 55.954 kb on - strand at 55.954 kb on - strand at 55.975 kb on + strand, within ABIE53_003916 at 55.975 kb on + strand, within ABIE53_003916 at 56.039 kb on + strand, within ABIE53_003916 at 56.039 kb on + strand, within ABIE53_003916 at 56.040 kb on - strand, within ABIE53_003916 at 56.040 kb on - strand, within ABIE53_003916 at 56.076 kb on + strand, within ABIE53_003916 at 56.076 kb on + strand, within ABIE53_003916 at 56.077 kb on - strand, within ABIE53_003916 at 56.165 kb on + strand, within ABIE53_003916 at 56.165 kb on + strand, within ABIE53_003916 at 56.165 kb on + strand, within ABIE53_003916 at 56.165 kb on + strand, within ABIE53_003916 at 56.165 kb on + strand, within ABIE53_003916 at 56.165 kb on + strand, within ABIE53_003916 at 56.165 kb on + strand, within ABIE53_003916 at 56.166 kb on - strand, within ABIE53_003916 at 56.166 kb on - strand, within ABIE53_003916 at 56.166 kb on - strand, within ABIE53_003916 at 56.166 kb on - strand, within ABIE53_003916 at 56.166 kb on - strand, within ABIE53_003916 at 56.166 kb on - strand, within ABIE53_003916 at 56.196 kb on - strand, within ABIE53_003916 at 56.250 kb on + strand, within ABIE53_003916 at 56.251 kb on - strand, within ABIE53_003916 at 56.322 kb on + strand, within ABIE53_003916 at 56.345 kb on + strand, within ABIE53_003916 at 56.345 kb on + strand, within ABIE53_003916 at 56.345 kb on + strand, within ABIE53_003916 at 56.345 kb on + strand, within ABIE53_003916 at 56.345 kb on + strand, within ABIE53_003916 at 56.345 kb on + strand, within ABIE53_003916 at 56.346 kb on - strand, within ABIE53_003916 at 56.346 kb on - strand, within ABIE53_003916 at 56.346 kb on - strand, within ABIE53_003916 at 56.346 kb on - strand, within ABIE53_003916 at 56.357 kb on + strand, within ABIE53_003916 at 56.358 kb on - strand, within ABIE53_003916 at 56.750 kb on + strand at 56.789 kb on + strand at 56.789 kb on + strand at 56.794 kb on + strand at 56.794 kb on + strand at 56.795 kb on - strand at 56.795 kb on - strand at 56.795 kb on - strand at 56.874 kb on + strand at 56.875 kb on - strand at 56.880 kb on + strand at 56.881 kb on - strand at 56.881 kb on - strand at 56.978 kb on + strand at 56.979 kb on - strand at 57.097 kb on + strand, within ABIE53_003917 at 57.097 kb on + strand, within ABIE53_003917 at 57.097 kb on + strand, within ABIE53_003917 at 57.097 kb on + strand, within ABIE53_003917 at 57.097 kb on + strand, within ABIE53_003917 at 57.098 kb on - strand, within ABIE53_003917 at 57.098 kb on - strand, within ABIE53_003917 at 57.196 kb on - strand, within ABIE53_003917 at 57.245 kb on + strand, within ABIE53_003917 at 57.245 kb on + strand, within ABIE53_003917 at 57.245 kb on + strand, within ABIE53_003917 at 57.245 kb on + strand, within ABIE53_003917 at 57.245 kb on + strand, within ABIE53_003917 at 57.246 kb on - strand, within ABIE53_003917 at 57.246 kb on - strand, within ABIE53_003917 at 57.294 kb on - strand, within ABIE53_003917 at 57.294 kb on - strand, within ABIE53_003917 at 57.294 kb on - strand, within ABIE53_003917 at 57.336 kb on + strand, within ABIE53_003917 at 57.351 kb on + strand, within ABIE53_003917 at 57.374 kb on + strand, within ABIE53_003917 at 57.374 kb on + strand, within ABIE53_003917 at 57.374 kb on + strand, within ABIE53_003917 at 57.375 kb on - strand, within ABIE53_003917 at 57.375 kb on - strand, within ABIE53_003917 at 57.377 kb on + strand, within ABIE53_003917 at 57.377 kb on + strand, within ABIE53_003917 at 57.377 kb on + strand, within ABIE53_003917 at 57.377 kb on + strand, within ABIE53_003917 at 57.377 kb on + strand, within ABIE53_003917 at 57.377 kb on + strand, within ABIE53_003917 at 57.377 kb on + strand, within ABIE53_003917 at 57.377 kb on + strand, within ABIE53_003917 at 57.377 kb on + strand, within ABIE53_003917 at 57.377 kb on + strand, within ABIE53_003917 at 57.378 kb on - strand, within ABIE53_003917 at 57.378 kb on - strand, within ABIE53_003917 at 57.378 kb on - strand, within ABIE53_003917 at 57.378 kb on - strand, within ABIE53_003917 at 57.393 kb on - strand, within ABIE53_003917 at 57.393 kb on - strand, within ABIE53_003917 at 57.421 kb on - strand, within ABIE53_003917 at 57.421 kb on - strand, within ABIE53_003917 at 57.698 kb on + strand, within ABIE53_003917 at 57.922 kb on + strand at 57.922 kb on + strand at 58.010 kb on + strand at 58.178 kb on + strand at 58.179 kb on - strand at 58.179 kb on - strand at 58.179 kb on - strand at 58.179 kb on - strand at 58.179 kb on - strand at 58.179 kb on - strand at 58.212 kb on + strand at 58.212 kb on + strand at 58.212 kb on + strand at 58.213 kb on - strand, within ABIE53_003918 at 58.236 kb on - strand, within ABIE53_003918 at 58.236 kb on - strand, within ABIE53_003918 at 58.450 kb on + strand, within ABIE53_003918 at 58.541 kb on + strand, within ABIE53_003918 at 58.541 kb on + strand, within ABIE53_003918 at 58.541 kb on + strand, within ABIE53_003918 at 58.542 kb on - strand, within ABIE53_003918 at 58.542 kb on - strand, within ABIE53_003918 at 58.542 kb on - strand, within ABIE53_003918 at 58.542 kb on - strand, within ABIE53_003918 at 58.542 kb on - strand, within ABIE53_003918 at 58.757 kb on - strand, within ABIE53_003918
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Propan-1-ol 13 g/L remove 55,953 + +0.0 55,953 + -1.7 55,953 + -1.3 55,953 + -1.0 55,953 + -0.5 55,953 + -0.4 55,953 + -0.3 55,954 - -2.2 55,954 - -1.2 55,954 - +0.7 55,975 + ABIE53_003916 0.11 -0.9 55,975 + ABIE53_003916 0.11 +0.4 56,039 + ABIE53_003916 0.18 -0.9 56,039 + ABIE53_003916 0.18 -0.0 56,040 - ABIE53_003916 0.18 -1.5 56,040 - ABIE53_003916 0.18 -0.0 56,076 + ABIE53_003916 0.22 -0.2 56,076 + ABIE53_003916 0.22 +0.6 56,077 - ABIE53_003916 0.22 -1.9 56,165 + ABIE53_003916 0.32 +1.0 56,165 + ABIE53_003916 0.32 -2.3 56,165 + ABIE53_003916 0.32 -0.7 56,165 + ABIE53_003916 0.32 -0.8 56,165 + ABIE53_003916 0.32 -0.5 56,165 + ABIE53_003916 0.32 -0.7 56,165 + ABIE53_003916 0.32 -1.5 56,166 - ABIE53_003916 0.32 -2.6 56,166 - ABIE53_003916 0.32 -1.2 56,166 - ABIE53_003916 0.32 -1.1 56,166 - ABIE53_003916 0.32 -0.1 56,166 - ABIE53_003916 0.32 -1.4 56,166 - ABIE53_003916 0.32 -1.6 56,196 - ABIE53_003916 0.35 +0.3 56,250 + ABIE53_003916 0.41 -2.4 56,251 - ABIE53_003916 0.41 -0.1 56,322 + ABIE53_003916 0.49 -1.7 56,345 + ABIE53_003916 0.52 -2.0 56,345 + ABIE53_003916 0.52 -1.6 56,345 + ABIE53_003916 0.52 -0.9 56,345 + ABIE53_003916 0.52 -0.7 56,345 + ABIE53_003916 0.52 -1.6 56,345 + ABIE53_003916 0.52 -0.8 56,346 - ABIE53_003916 0.52 -0.0 56,346 - ABIE53_003916 0.52 -0.0 56,346 - ABIE53_003916 0.52 -0.9 56,346 - ABIE53_003916 0.52 -0.5 56,357 + ABIE53_003916 0.53 -0.7 56,358 - ABIE53_003916 0.53 -0.7 56,750 + -1.0 56,789 + -1.4 56,789 + -0.6 56,794 + -0.5 56,794 + -0.9 56,795 - +1.4 56,795 - -0.8 56,795 - -0.4 56,874 + +2.7 56,875 - -0.3 56,880 + -1.3 56,881 - -0.3 56,881 - +0.2 56,978 + -1.6 56,979 - +0.4 57,097 + ABIE53_003917 0.17 -0.9 57,097 + ABIE53_003917 0.17 +4.8 57,097 + ABIE53_003917 0.17 +1.0 57,097 + ABIE53_003917 0.17 +0.8 57,097 + ABIE53_003917 0.17 -2.6 57,098 - ABIE53_003917 0.17 -0.3 57,098 - ABIE53_003917 0.17 +1.1 57,196 - ABIE53_003917 0.26 +0.3 57,245 + ABIE53_003917 0.30 -0.5 57,245 + ABIE53_003917 0.30 -1.2 57,245 + ABIE53_003917 0.30 -1.4 57,245 + ABIE53_003917 0.30 -0.5 57,245 + ABIE53_003917 0.30 -1.2 57,246 - ABIE53_003917 0.30 +0.0 57,246 - ABIE53_003917 0.30 -0.0 57,294 - ABIE53_003917 0.35 +1.3 57,294 - ABIE53_003917 0.35 -1.1 57,294 - ABIE53_003917 0.35 +1.0 57,336 + ABIE53_003917 0.38 -0.5 57,351 + ABIE53_003917 0.40 -0.0 57,374 + ABIE53_003917 0.42 +1.7 57,374 + ABIE53_003917 0.42 -0.7 57,374 + ABIE53_003917 0.42 +1.5 57,375 - ABIE53_003917 0.42 -0.5 57,375 - ABIE53_003917 0.42 +0.7 57,377 + ABIE53_003917 0.42 -0.2 57,377 + ABIE53_003917 0.42 -0.2 57,377 + ABIE53_003917 0.42 -0.7 57,377 + ABIE53_003917 0.42 +1.1 57,377 + ABIE53_003917 0.42 -1.6 57,377 + ABIE53_003917 0.42 +1.3 57,377 + ABIE53_003917 0.42 -1.7 57,377 + ABIE53_003917 0.42 -0.3 57,377 + ABIE53_003917 0.42 -2.0 57,377 + ABIE53_003917 0.42 -0.5 57,378 - ABIE53_003917 0.42 -0.2 57,378 - ABIE53_003917 0.42 +1.0 57,378 - ABIE53_003917 0.42 -1.8 57,378 - ABIE53_003917 0.42 +0.2 57,393 - ABIE53_003917 0.44 -0.7 57,393 - ABIE53_003917 0.44 -0.4 57,421 - ABIE53_003917 0.46 -0.8 57,421 - ABIE53_003917 0.46 -0.2 57,698 + ABIE53_003917 0.72 -0.1 57,922 + -0.9 57,922 + -0.9 58,010 + -2.4 58,178 + +0.3 58,179 - -1.9 58,179 - +0.5 58,179 - -1.4 58,179 - -0.2 58,179 - -1.7 58,179 - -1.5 58,212 + -1.2 58,212 + -0.8 58,212 + +0.6 58,213 - ABIE53_003918 0.10 -0.8 58,236 - ABIE53_003918 0.12 -1.1 58,236 - ABIE53_003918 0.12 -0.9 58,450 + ABIE53_003918 0.34 +1.7 58,541 + ABIE53_003918 0.43 -0.5 58,541 + ABIE53_003918 0.43 -0.7 58,541 + ABIE53_003918 0.43 -1.1 58,542 - ABIE53_003918 0.43 -1.6 58,542 - ABIE53_003918 0.43 -0.5 58,542 - ABIE53_003918 0.43 -1.3 58,542 - ABIE53_003918 0.43 -0.2 58,542 - ABIE53_003918 0.43 -2.8 58,757 - ABIE53_003918 0.65 -0.8
Or see this region's nucleotide sequence