Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000575

Experiment: R2A with Propan-1-ol 13 g/L

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000574 and ABIE53_000575 are separated by 318 nucleotidesABIE53_000575 and ABIE53_000576 are separated by 125 nucleotides ABIE53_000574: ABIE53_000574 - glyoxylate/hydroxypyruvate reductase A, at 624,353 to 625,294 _000574 ABIE53_000575: ABIE53_000575 - putative alpha/beta hydrolase family esterase, at 625,613 to 626,215 _000575 ABIE53_000576: ABIE53_000576 - sulfate transport system substrate-binding protein, at 626,341 to 627,372 _000576 Position (kb) 625 626 627Strain fitness (log2 ratio) -2 -1 0 1 2at 624.630 kb on + strand, within ABIE53_000574at 624.630 kb on + strand, within ABIE53_000574at 624.631 kb on - strand, within ABIE53_000574at 624.691 kb on + strand, within ABIE53_000574at 624.942 kb on + strand, within ABIE53_000574at 624.963 kb on + strand, within ABIE53_000574at 624.963 kb on + strand, within ABIE53_000574at 624.963 kb on + strand, within ABIE53_000574at 624.964 kb on - strand, within ABIE53_000574at 624.987 kb on + strand, within ABIE53_000574at 624.987 kb on + strand, within ABIE53_000574at 624.987 kb on + strand, within ABIE53_000574at 624.987 kb on + strand, within ABIE53_000574at 624.988 kb on - strand, within ABIE53_000574at 624.988 kb on - strand, within ABIE53_000574at 624.988 kb on - strand, within ABIE53_000574at 625.277 kb on - strandat 625.277 kb on - strandat 625.277 kb on - strandat 625.277 kb on - strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.278 kb on + strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.279 kb on - strandat 625.435 kb on + strandat 625.435 kb on + strandat 625.436 kb on - strandat 625.436 kb on - strandat 625.436 kb on - strandat 625.453 kb on + strandat 625.454 kb on - strandat 625.880 kb on + strand, within ABIE53_000575at 625.880 kb on + strand, within ABIE53_000575at 625.881 kb on - strand, within ABIE53_000575at 626.129 kb on + strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.130 kb on - strand, within ABIE53_000575at 626.214 kb on - strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.261 kb on + strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.262 kb on - strandat 626.263 kb on + strandat 626.264 kb on - strandat 626.264 kb on - strandat 626.320 kb on - strandat 626.420 kb on + strandat 626.462 kb on - strand, within ABIE53_000576at 626.462 kb on - strand, within ABIE53_000576at 626.468 kb on + strand, within ABIE53_000576at 626.468 kb on + strand, within ABIE53_000576at 626.469 kb on - strand, within ABIE53_000576at 626.469 kb on - strand, within ABIE53_000576at 626.482 kb on + strand, within ABIE53_000576at 626.482 kb on + strand, within ABIE53_000576at 626.483 kb on - strand, within ABIE53_000576at 626.483 kb on - strand, within ABIE53_000576at 626.483 kb on - strand, within ABIE53_000576at 626.515 kb on + strand, within ABIE53_000576at 626.515 kb on + strand, within ABIE53_000576at 626.516 kb on - strand, within ABIE53_000576at 626.516 kb on - strand, within ABIE53_000576at 626.516 kb on - strand, within ABIE53_000576at 626.516 kb on - strand, within ABIE53_000576at 626.517 kb on + strand, within ABIE53_000576at 626.517 kb on + strand, within ABIE53_000576at 626.517 kb on + strand, within ABIE53_000576at 626.517 kb on + strand, within ABIE53_000576at 626.518 kb on - strand, within ABIE53_000576at 626.518 kb on - strand, within ABIE53_000576at 626.518 kb on - strand, within ABIE53_000576at 626.588 kb on + strand, within ABIE53_000576at 626.713 kb on + strand, within ABIE53_000576at 626.839 kb on + strand, within ABIE53_000576at 626.840 kb on - strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.845 kb on + strand, within ABIE53_000576at 626.846 kb on - strand, within ABIE53_000576at 626.846 kb on - strand, within ABIE53_000576at 626.846 kb on - strand, within ABIE53_000576at 626.846 kb on - strand, within ABIE53_000576at 627.067 kb on + strand, within ABIE53_000576at 627.067 kb on + strand, within ABIE53_000576at 627.068 kb on - strand, within ABIE53_000576at 627.157 kb on + strand, within ABIE53_000576at 627.157 kb on + strand, within ABIE53_000576at 627.158 kb on - strand, within ABIE53_000576at 627.158 kb on - strand, within ABIE53_000576at 627.158 kb on - strand, within ABIE53_000576at 627.158 kb on - strand, within ABIE53_000576at 627.166 kb on + strand, within ABIE53_000576at 627.166 kb on + strand, within ABIE53_000576at 627.167 kb on - strand, within ABIE53_000576at 627.167 kb on - strand, within ABIE53_000576at 627.167 kb on - strand, within ABIE53_000576at 627.167 kb on - strand, within ABIE53_000576

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Propan-1-ol 13 g/L
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624,630 + ABIE53_000574 0.29 -0.2
624,630 + ABIE53_000574 0.29 +1.6
624,631 - ABIE53_000574 0.30 -0.8
624,691 + ABIE53_000574 0.36 -1.5
624,942 + ABIE53_000574 0.63 -0.5
624,963 + ABIE53_000574 0.65 -0.8
624,963 + ABIE53_000574 0.65 -0.2
624,963 + ABIE53_000574 0.65 -0.9
624,964 - ABIE53_000574 0.65 -0.6
624,987 + ABIE53_000574 0.67 -0.4
624,987 + ABIE53_000574 0.67 -1.0
624,987 + ABIE53_000574 0.67 -0.7
624,987 + ABIE53_000574 0.67 -0.3
624,988 - ABIE53_000574 0.67 -0.8
624,988 - ABIE53_000574 0.67 -0.9
624,988 - ABIE53_000574 0.67 +0.1
625,277 - -0.4
625,277 - -0.9
625,277 - +0.3
625,277 - -0.4
625,278 + +0.4
625,278 + -0.4
625,278 + -0.0
625,278 + -0.6
625,278 + +0.1
625,278 + -0.0
625,278 + -0.1
625,278 + +0.2
625,278 + -0.8
625,278 + -1.4
625,278 + -0.9
625,278 + -0.4
625,278 + +0.4
625,279 - -0.4
625,279 - -0.8
625,279 - +1.3
625,279 - -0.8
625,279 - -1.7
625,279 - +0.0
625,279 - -0.3
625,279 - +1.7
625,279 - -0.2
625,279 - -1.2
625,279 - -0.8
625,279 - -0.8
625,279 - -2.4
625,279 - -0.4
625,279 - +0.8
625,435 + -0.4
625,435 + -0.3
625,436 - +0.3
625,436 - -0.2
625,436 - -0.4
625,453 + -2.5
625,454 - -1.1
625,880 + ABIE53_000575 0.44 -0.1
625,880 + ABIE53_000575 0.44 -1.0
625,881 - ABIE53_000575 0.44 -1.0
626,129 + ABIE53_000575 0.86 -1.1
626,130 - ABIE53_000575 0.86 -0.2
626,130 - ABIE53_000575 0.86 -1.4
626,130 - ABIE53_000575 0.86 -1.0
626,130 - ABIE53_000575 0.86 +0.6
626,130 - ABIE53_000575 0.86 +0.2
626,130 - ABIE53_000575 0.86 -0.5
626,214 - +0.4
626,261 + -0.4
626,261 + -0.1
626,261 + -0.8
626,261 + -1.0
626,261 + +0.3
626,261 + -0.2
626,261 + -0.2
626,262 - +0.4
626,262 - -0.4
626,262 - -1.6
626,262 - -1.5
626,262 - -1.8
626,262 - +0.9
626,263 + -0.5
626,264 - -0.0
626,264 - -1.0
626,320 - -0.1
626,420 + -1.5
626,462 - ABIE53_000576 0.12 -0.0
626,462 - ABIE53_000576 0.12 -0.4
626,468 + ABIE53_000576 0.12 -0.2
626,468 + ABIE53_000576 0.12 -0.5
626,469 - ABIE53_000576 0.12 -0.3
626,469 - ABIE53_000576 0.12 -0.5
626,482 + ABIE53_000576 0.14 -0.2
626,482 + ABIE53_000576 0.14 -0.7
626,483 - ABIE53_000576 0.14 -0.6
626,483 - ABIE53_000576 0.14 -0.5
626,483 - ABIE53_000576 0.14 +0.4
626,515 + ABIE53_000576 0.17 -1.4
626,515 + ABIE53_000576 0.17 -0.8
626,516 - ABIE53_000576 0.17 -0.3
626,516 - ABIE53_000576 0.17 -1.3
626,516 - ABIE53_000576 0.17 -1.0
626,516 - ABIE53_000576 0.17 -1.2
626,517 + ABIE53_000576 0.17 -0.8
626,517 + ABIE53_000576 0.17 -1.2
626,517 + ABIE53_000576 0.17 -0.6
626,517 + ABIE53_000576 0.17 -1.6
626,518 - ABIE53_000576 0.17 -0.4
626,518 - ABIE53_000576 0.17 -1.1
626,518 - ABIE53_000576 0.17 -0.1
626,588 + ABIE53_000576 0.24 +2.0
626,713 + ABIE53_000576 0.36 +0.4
626,839 + ABIE53_000576 0.48 +1.2
626,840 - ABIE53_000576 0.48 -0.5
626,845 + ABIE53_000576 0.49 -0.7
626,845 + ABIE53_000576 0.49 -0.9
626,845 + ABIE53_000576 0.49 -0.9
626,845 + ABIE53_000576 0.49 -0.4
626,845 + ABIE53_000576 0.49 -1.6
626,845 + ABIE53_000576 0.49 +0.3
626,846 - ABIE53_000576 0.49 +0.7
626,846 - ABIE53_000576 0.49 -0.3
626,846 - ABIE53_000576 0.49 -0.6
626,846 - ABIE53_000576 0.49 -0.3
627,067 + ABIE53_000576 0.70 -1.6
627,067 + ABIE53_000576 0.70 +0.5
627,068 - ABIE53_000576 0.70 -0.9
627,157 + ABIE53_000576 0.79 -2.0
627,157 + ABIE53_000576 0.79 -0.9
627,158 - ABIE53_000576 0.79 -1.6
627,158 - ABIE53_000576 0.79 +0.2
627,158 - ABIE53_000576 0.79 -0.6
627,158 - ABIE53_000576 0.79 +1.4
627,166 + ABIE53_000576 0.80 +1.2
627,166 + ABIE53_000576 0.80 -0.1
627,167 - ABIE53_000576 0.80 -0.5
627,167 - ABIE53_000576 0.80 -0.2
627,167 - ABIE53_000576 0.80 -1.6
627,167 - ABIE53_000576 0.80 -0.5

Or see this region's nucleotide sequence