Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003446

Experiment: R2A with Propan-1-ol 13 g/L

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Propan-1-ol 13 g/L
3,872,783	+		ABIE53_003445	0.35	+1.5
3,872,783	+		ABIE53_003445	0.35	+0.7
3,872,783	+		ABIE53_003445	0.35	-0.1
3,872,784	-		ABIE53_003445	0.36	+2.5
3,872,784	-		ABIE53_003445	0.36	-1.5
3,872,784	-		ABIE53_003445	0.36	-0.2
3,872,784	-		ABIE53_003445	0.36	+2.8
3,872,784	-		ABIE53_003445	0.36	-1.2
3,872,784	-		ABIE53_003445	0.36	-0.1
3,872,784	-		ABIE53_003445	0.36	+0.0
3,872,984	+		ABIE53_003445	0.53	-0.5
3,872,985	-		ABIE53_003445	0.53	-0.1
3,872,985	-		ABIE53_003445	0.53	+0.7
3,872,985	-		ABIE53_003445	0.53	+0.9
3,873,212	+		ABIE53_003445	0.72	-1.0
3,873,212	+		ABIE53_003445	0.72	-0.6
3,873,212	+		ABIE53_003445	0.72	+0.7
3,873,212	+		ABIE53_003445	0.72	+1.2
3,873,212	+		ABIE53_003445	0.72	+0.3
3,873,212	+		ABIE53_003445	0.72	+1.3
3,873,213	-		ABIE53_003445	0.72	+0.9
3,873,213	-		ABIE53_003445	0.72	+0.3
3,873,213	-		ABIE53_003445	0.72	+1.5
3,873,213	-		ABIE53_003445	0.72	+0.7
3,873,521	+				+1.9
3,873,569	-				-1.6
3,873,569	-				-0.2
3,873,569	-				-1.9
3,873,585	-				-0.3
3,873,585	-				+0.4
3,873,585	-				-0.3
3,873,682	+		ABIE53_003446	0.16	-0.3
3,873,682	+		ABIE53_003446	0.16	-1.9
3,873,695	-		ABIE53_003446	0.18	-0.4
3,873,768	+		ABIE53_003446	0.29	-0.2
3,873,769	-		ABIE53_003446	0.29	-0.1
3,873,846	+		ABIE53_003446	0.40	-1.3
3,873,846	+		ABIE53_003446	0.40	+0.7
3,873,846	+		ABIE53_003446	0.40	+2.5
3,873,846	+		ABIE53_003446	0.40	-0.1
3,873,846	+		ABIE53_003446	0.40	-2.2
3,873,847	-		ABIE53_003446	0.40	+0.9
3,873,847	-		ABIE53_003446	0.40	-0.4
3,873,847	-		ABIE53_003446	0.40	+0.4
3,873,847	-		ABIE53_003446	0.40	-0.6
3,873,847	-		ABIE53_003446	0.40	-1.7
3,873,847	-		ABIE53_003446	0.40	+0.5
3,873,847	-		ABIE53_003446	0.40	-0.8
3,873,847	-		ABIE53_003446	0.40	-0.6
3,873,847	-		ABIE53_003446	0.40	-0.3
3,874,025	-		ABIE53_003446	0.65	-0.2
3,874,208	-				-1.6
3,874,208	-				-0.5
3,874,208	-				-0.7
3,874,208	-				+1.0
3,874,310	+				-1.8
3,874,315	+				-0.0
3,874,315	+				-1.6
3,874,315	+				-0.7
3,874,315	+				-0.8
3,874,315	+				+0.0
3,874,316	-				-0.4
3,874,316	-				-0.7
3,874,316	-				-1.1
3,874,316	-				-1.5
3,874,316	-				-0.4
3,874,316	-				+0.6
3,874,380	+				-0.3
3,874,380	+				-0.4
3,874,420	+				-0.1
3,874,421	-				-0.8
3,874,421	-				+0.0
3,874,421	-				-0.2
3,874,522	+				-0.7
3,874,522	+				-1.1
3,874,522	+				-0.2
3,874,523	-				+0.2
3,874,523	-				-1.0
3,874,523	-				+0.6
3,874,523	-				-0.1
3,874,541	+				-0.3
3,874,566	+				-1.8
3,874,566	+				-1.1
3,874,567	-				-0.1
3,874,681	+		ABIE53_003447	0.17	+0.2
3,874,682	-		ABIE53_003447	0.17	-2.1
3,874,682	-		ABIE53_003447	0.17	-1.0
3,874,714	+		ABIE53_003447	0.21	-0.1
3,874,714	+		ABIE53_003447	0.21	-1.0
3,874,714	+		ABIE53_003447	0.21	+0.1
3,874,878	+		ABIE53_003447	0.41	-2.3
3,874,878	+		ABIE53_003447	0.41	+0.1
3,874,938	+		ABIE53_003447	0.48	+0.9
3,874,939	-		ABIE53_003447	0.48	-0.2
3,874,939	-		ABIE53_003447	0.48	-0.1
3,874,939	-		ABIE53_003447	0.48	-1.2
3,874,939	-		ABIE53_003447	0.48	-0.6
3,874,940	+		ABIE53_003447	0.48	-0.3
3,874,940	+		ABIE53_003447	0.48	-0.9
3,874,941	-		ABIE53_003447	0.49	+0.2
3,874,941	-		ABIE53_003447	0.49	+0.2
3,874,954	+		ABIE53_003447	0.50	-1.7
3,874,955	-		ABIE53_003447	0.50	+0.7
3,874,955	-		ABIE53_003447	0.50	-1.7
3,874,955	-		ABIE53_003447	0.50	-1.2
3,874,955	-		ABIE53_003447	0.50	-0.7
3,874,955	-		ABIE53_003447	0.50	-1.0
3,874,958	+		ABIE53_003447	0.51	-0.5
3,874,958	+		ABIE53_003447	0.51	-0.5
3,874,958	+		ABIE53_003447	0.51	-0.9
3,874,958	+		ABIE53_003447	0.51	+1.1
3,874,959	-		ABIE53_003447	0.51	+0.2
3,874,959	-		ABIE53_003447	0.51	-0.5
3,875,113	-		ABIE53_003447	0.69	-0.7
3,875,113	-		ABIE53_003447	0.69	-0.6
3,875,153	+		ABIE53_003447	0.74	+0.5
3,875,153	+		ABIE53_003447	0.74	-0.7
3,875,153	+		ABIE53_003447	0.74	-0.3
3,875,153	+		ABIE53_003447	0.74	-1.5
3,875,153	+		ABIE53_003447	0.74	+0.4
3,875,153	+		ABIE53_003447	0.74	-0.2
3,875,153	+		ABIE53_003447	0.74	-0.6
3,875,153	+		ABIE53_003447	0.74	-0.4
3,875,153	+		ABIE53_003447	0.74	-0.9
3,875,154	-		ABIE53_003447	0.74	-1.7
3,875,154	-		ABIE53_003447	0.74	+0.5
3,875,154	-		ABIE53_003447	0.74	-0.6
3,875,154	-		ABIE53_003447	0.74	-0.4
3,875,154	-		ABIE53_003447	0.74	-0.9
3,875,154	-		ABIE53_003447	0.74	+0.3
3,875,154	-		ABIE53_003447	0.74	-2.0
3,875,157	+		ABIE53_003447	0.75	-1.1
3,875,157	+		ABIE53_003447	0.75	-0.6
3,875,158	-		ABIE53_003447	0.75	-0.9
3,875,158	-		ABIE53_003447	0.75	+0.4