Experiment: M9 with Isopropyl alcohol 21 g/L
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004747 and ABIE53_004748 are separated by 35 nucleotides ABIE53_004748 and ABIE53_004749 are separated by 130 nucleotides
ABIE53_004747: ABIE53_004747 - hypothetical protein, at 946,826 to 950,689
_004747
ABIE53_004748: ABIE53_004748 - GntR family transcriptional regulator/MocR family aminotransferase, at 950,725 to 952,275
_004748
ABIE53_004749: ABIE53_004749 - putative spermidine/putrescine transport system ATP-binding protein, at 952,406 to 953,524
_004749
Position (kb) 950
951
952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 949.782 kb on - strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.793 kb on + strand, within ABIE53_004747 at 949.841 kb on + strand, within ABIE53_004747 at 949.841 kb on + strand, within ABIE53_004747 at 949.841 kb on + strand, within ABIE53_004747 at 949.842 kb on - strand, within ABIE53_004747 at 949.842 kb on - strand, within ABIE53_004747 at 949.842 kb on - strand, within ABIE53_004747 at 949.842 kb on - strand, within ABIE53_004747 at 949.842 kb on - strand, within ABIE53_004747 at 950.300 kb on + strand, within ABIE53_004747 at 950.301 kb on - strand, within ABIE53_004747 at 950.301 kb on - strand, within ABIE53_004747 at 950.396 kb on + strand at 950.396 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.405 kb on + strand at 950.406 kb on - strand at 950.406 kb on - strand at 950.406 kb on - strand at 950.406 kb on - strand at 950.406 kb on - strand at 950.406 kb on - strand at 950.420 kb on + strand at 950.420 kb on + strand at 950.421 kb on - strand at 950.421 kb on - strand at 950.421 kb on - strand at 950.576 kb on + strand at 950.576 kb on + strand at 950.577 kb on - strand at 950.662 kb on + strand at 950.663 kb on - strand at 950.663 kb on - strand at 950.691 kb on + strand at 950.691 kb on + strand at 950.692 kb on - strand at 950.692 kb on - strand at 950.713 kb on + strand at 950.714 kb on - strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.864 kb on + strand at 950.865 kb on - strand at 950.865 kb on - strand at 950.865 kb on - strand at 950.865 kb on - strand at 950.865 kb on - strand at 950.865 kb on - strand at 950.867 kb on + strand at 950.868 kb on - strand at 950.868 kb on - strand at 950.868 kb on - strand at 950.868 kb on - strand at 950.868 kb on - strand at 950.868 kb on - strand at 951.047 kb on + strand, within ABIE53_004748 at 951.141 kb on - strand, within ABIE53_004748 at 951.168 kb on + strand, within ABIE53_004748 at 951.168 kb on + strand, within ABIE53_004748 at 951.168 kb on + strand, within ABIE53_004748 at 951.169 kb on - strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.197 kb on + strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.198 kb on - strand, within ABIE53_004748 at 951.245 kb on + strand, within ABIE53_004748 at 951.245 kb on + strand, within ABIE53_004748 at 951.246 kb on - strand, within ABIE53_004748 at 951.246 kb on - strand, within ABIE53_004748 at 951.246 kb on - strand, within ABIE53_004748 at 951.321 kb on - strand, within ABIE53_004748 at 951.411 kb on - strand, within ABIE53_004748 at 951.411 kb on - strand, within ABIE53_004748 at 951.411 kb on - strand, within ABIE53_004748 at 951.475 kb on - strand, within ABIE53_004748 at 951.475 kb on - strand, within ABIE53_004748 at 951.548 kb on + strand, within ABIE53_004748 at 951.548 kb on + strand, within ABIE53_004748 at 951.548 kb on + strand, within ABIE53_004748 at 951.548 kb on + strand, within ABIE53_004748 at 951.549 kb on - strand, within ABIE53_004748 at 951.625 kb on - strand, within ABIE53_004748 at 951.630 kb on + strand, within ABIE53_004748 at 951.630 kb on + strand, within ABIE53_004748 at 951.631 kb on - strand, within ABIE53_004748 at 951.683 kb on + strand, within ABIE53_004748 at 951.683 kb on + strand, within ABIE53_004748 at 951.684 kb on - strand, within ABIE53_004748 at 951.730 kb on + strand, within ABIE53_004748 at 951.731 kb on + strand, within ABIE53_004748 at 951.731 kb on + strand, within ABIE53_004748 at 951.731 kb on + strand, within ABIE53_004748 at 951.731 kb on + strand, within ABIE53_004748 at 951.732 kb on - strand, within ABIE53_004748 at 951.732 kb on - strand, within ABIE53_004748 at 951.732 kb on - strand, within ABIE53_004748 at 951.732 kb on - strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.025 kb on + strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.026 kb on - strand, within ABIE53_004748 at 952.056 kb on - strand, within ABIE53_004748 at 952.056 kb on - strand, within ABIE53_004748 at 952.056 kb on - strand, within ABIE53_004748 at 952.056 kb on - strand, within ABIE53_004748 at 952.056 kb on - strand, within ABIE53_004748 at 952.079 kb on + strand, within ABIE53_004748 at 952.079 kb on + strand, within ABIE53_004748 at 952.079 kb on + strand, within ABIE53_004748 at 952.080 kb on - strand, within ABIE53_004748 at 952.080 kb on - strand, within ABIE53_004748 at 952.080 kb on - strand, within ABIE53_004748 at 952.095 kb on + strand, within ABIE53_004748 at 952.096 kb on - strand, within ABIE53_004748 at 952.209 kb on - strand at 952.269 kb on + strand at 952.270 kb on - strand at 952.308 kb on + strand at 952.308 kb on + strand at 952.309 kb on - strand at 952.313 kb on + strand at 952.313 kb on + strand at 952.314 kb on - strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.329 kb on + strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.330 kb on - strand at 952.331 kb on + strand at 952.331 kb on + strand at 952.331 kb on + strand at 952.332 kb on - strand at 952.364 kb on + strand at 952.365 kb on - strand at 952.399 kb on + strand at 952.399 kb on + strand at 952.399 kb on + strand at 952.399 kb on + strand at 952.400 kb on - strand at 952.454 kb on + strand at 952.454 kb on + strand at 952.454 kb on + strand at 952.454 kb on + strand at 952.454 kb on + strand at 952.455 kb on - strand at 952.455 kb on - strand at 952.455 kb on - strand at 952.455 kb on - strand at 952.455 kb on - strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.499 kb on + strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.500 kb on - strand at 952.670 kb on + strand, within ABIE53_004749 at 952.670 kb on + strand, within ABIE53_004749 at 952.670 kb on + strand, within ABIE53_004749 at 952.670 kb on + strand, within ABIE53_004749 at 952.671 kb on - strand, within ABIE53_004749 at 952.671 kb on - strand, within ABIE53_004749 at 952.940 kb on + strand, within ABIE53_004749 at 952.940 kb on + strand, within ABIE53_004749 at 952.985 kb on + strand, within ABIE53_004749 at 952.985 kb on + strand, within ABIE53_004749 at 952.986 kb on - strand, within ABIE53_004749 at 953.069 kb on - strand, within ABIE53_004749 at 953.084 kb on + strand, within ABIE53_004749 at 953.084 kb on + strand, within ABIE53_004749 at 953.084 kb on + strand, within ABIE53_004749 at 953.161 kb on - strand, within ABIE53_004749
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Isopropyl alcohol 21 g/L remove 949,782 - ABIE53_004747 0.77 +0.5 949,793 + ABIE53_004747 0.77 -0.6 949,793 + ABIE53_004747 0.77 +0.1 949,793 + ABIE53_004747 0.77 +0.2 949,793 + ABIE53_004747 0.77 -0.4 949,793 + ABIE53_004747 0.77 -0.3 949,793 + ABIE53_004747 0.77 +1.2 949,841 + ABIE53_004747 0.78 -0.8 949,841 + ABIE53_004747 0.78 -2.9 949,841 + ABIE53_004747 0.78 -0.9 949,842 - ABIE53_004747 0.78 -0.8 949,842 - ABIE53_004747 0.78 +0.3 949,842 - ABIE53_004747 0.78 -0.0 949,842 - ABIE53_004747 0.78 +0.1 949,842 - ABIE53_004747 0.78 +1.1 950,300 + ABIE53_004747 0.90 -1.2 950,301 - ABIE53_004747 0.90 -0.5 950,301 - ABIE53_004747 0.90 +0.6 950,396 + -0.0 950,396 + +1.2 950,405 + +0.3 950,405 + -0.7 950,405 + -0.7 950,405 + -0.4 950,405 + -0.8 950,405 + +1.5 950,405 + -0.3 950,405 + -0.0 950,405 + -0.6 950,406 - +0.8 950,406 - +0.2 950,406 - -0.3 950,406 - +0.2 950,406 - -0.3 950,406 - -1.6 950,420 + -0.5 950,420 + -0.3 950,421 - -0.0 950,421 - -1.4 950,421 - +0.2 950,576 + -0.7 950,576 + +0.7 950,577 - -2.9 950,662 + +0.8 950,663 - +0.3 950,663 - -0.6 950,691 + +0.1 950,691 + -1.1 950,692 - -0.7 950,692 - -0.7 950,713 + -0.7 950,714 - +0.4 950,864 + -0.2 950,864 + -1.9 950,864 + +0.6 950,864 + -0.9 950,864 + -1.2 950,864 + -0.3 950,864 + -0.8 950,864 + -1.3 950,865 - -0.3 950,865 - -1.0 950,865 - -0.0 950,865 - +1.3 950,865 - -0.1 950,865 - -0.0 950,867 + -0.4 950,868 - +0.3 950,868 - -0.2 950,868 - -0.9 950,868 - +0.1 950,868 - +0.6 950,868 - +0.2 951,047 + ABIE53_004748 0.21 -0.9 951,141 - ABIE53_004748 0.27 +1.0 951,168 + ABIE53_004748 0.29 -1.0 951,168 + ABIE53_004748 0.29 -0.4 951,168 + ABIE53_004748 0.29 -0.2 951,169 - ABIE53_004748 0.29 -0.0 951,197 + ABIE53_004748 0.30 -1.2 951,197 + ABIE53_004748 0.30 -1.8 951,197 + ABIE53_004748 0.30 +0.0 951,197 + ABIE53_004748 0.30 +0.3 951,197 + ABIE53_004748 0.30 +0.9 951,197 + ABIE53_004748 0.30 -0.2 951,197 + ABIE53_004748 0.30 -0.4 951,197 + ABIE53_004748 0.30 -0.1 951,197 + ABIE53_004748 0.30 -0.3 951,198 - ABIE53_004748 0.30 -0.5 951,198 - ABIE53_004748 0.30 +0.1 951,198 - ABIE53_004748 0.30 -0.2 951,198 - ABIE53_004748 0.30 -0.1 951,198 - ABIE53_004748 0.30 -0.7 951,198 - ABIE53_004748 0.30 -0.6 951,198 - ABIE53_004748 0.30 -0.7 951,198 - ABIE53_004748 0.30 +2.5 951,198 - ABIE53_004748 0.30 -1.1 951,198 - ABIE53_004748 0.30 -0.3 951,245 + ABIE53_004748 0.34 -1.2 951,245 + ABIE53_004748 0.34 -0.8 951,246 - ABIE53_004748 0.34 -0.9 951,246 - ABIE53_004748 0.34 -0.1 951,246 - ABIE53_004748 0.34 +0.3 951,321 - ABIE53_004748 0.38 +1.1 951,411 - ABIE53_004748 0.44 -0.2 951,411 - ABIE53_004748 0.44 -0.1 951,411 - ABIE53_004748 0.44 -0.3 951,475 - ABIE53_004748 0.48 -0.2 951,475 - ABIE53_004748 0.48 -0.0 951,548 + ABIE53_004748 0.53 +0.3 951,548 + ABIE53_004748 0.53 -0.1 951,548 + ABIE53_004748 0.53 +0.4 951,548 + ABIE53_004748 0.53 +0.1 951,549 - ABIE53_004748 0.53 -1.5 951,625 - ABIE53_004748 0.58 +0.1 951,630 + ABIE53_004748 0.58 +0.2 951,630 + ABIE53_004748 0.58 +0.5 951,631 - ABIE53_004748 0.58 -0.2 951,683 + ABIE53_004748 0.62 +0.0 951,683 + ABIE53_004748 0.62 +0.1 951,684 - ABIE53_004748 0.62 -0.1 951,730 + ABIE53_004748 0.65 -0.4 951,731 + ABIE53_004748 0.65 +0.1 951,731 + ABIE53_004748 0.65 +0.1 951,731 + ABIE53_004748 0.65 +0.1 951,731 + ABIE53_004748 0.65 -0.5 951,732 - ABIE53_004748 0.65 +0.2 951,732 - ABIE53_004748 0.65 +0.7 951,732 - ABIE53_004748 0.65 -0.2 951,732 - ABIE53_004748 0.65 -0.6 952,025 + ABIE53_004748 0.84 -1.7 952,025 + ABIE53_004748 0.84 +0.6 952,025 + ABIE53_004748 0.84 +0.8 952,025 + ABIE53_004748 0.84 +0.2 952,025 + ABIE53_004748 0.84 -0.6 952,025 + ABIE53_004748 0.84 -0.7 952,025 + ABIE53_004748 0.84 -1.3 952,025 + ABIE53_004748 0.84 +0.1 952,025 + ABIE53_004748 0.84 -1.4 952,025 + ABIE53_004748 0.84 +2.1 952,025 + ABIE53_004748 0.84 -0.7 952,026 - ABIE53_004748 0.84 +0.1 952,026 - ABIE53_004748 0.84 +0.1 952,026 - ABIE53_004748 0.84 -0.5 952,026 - ABIE53_004748 0.84 -1.2 952,026 - ABIE53_004748 0.84 +0.5 952,026 - ABIE53_004748 0.84 -0.8 952,026 - ABIE53_004748 0.84 +0.0 952,026 - ABIE53_004748 0.84 +0.1 952,026 - ABIE53_004748 0.84 -1.1 952,026 - ABIE53_004748 0.84 +0.0 952,026 - ABIE53_004748 0.84 -0.8 952,026 - ABIE53_004748 0.84 +0.6 952,026 - ABIE53_004748 0.84 +0.1 952,056 - ABIE53_004748 0.86 -0.5 952,056 - ABIE53_004748 0.86 +0.5 952,056 - ABIE53_004748 0.86 +0.0 952,056 - ABIE53_004748 0.86 -0.4 952,056 - ABIE53_004748 0.86 +1.2 952,079 + ABIE53_004748 0.87 -1.5 952,079 + ABIE53_004748 0.87 +0.7 952,079 + ABIE53_004748 0.87 +1.2 952,080 - ABIE53_004748 0.87 +0.9 952,080 - ABIE53_004748 0.87 +0.5 952,080 - ABIE53_004748 0.87 -0.2 952,095 + ABIE53_004748 0.88 +0.9 952,096 - ABIE53_004748 0.88 -0.1 952,209 - -0.4 952,269 + +0.5 952,270 - -0.6 952,308 + +1.0 952,308 + -0.3 952,309 - -1.2 952,313 + -0.3 952,313 + -0.2 952,314 - +1.5 952,329 + +0.5 952,329 + -0.6 952,329 + +0.3 952,329 + -0.7 952,329 + -0.4 952,329 + -1.0 952,329 + -0.3 952,329 + +0.2 952,330 - +0.2 952,330 - -0.4 952,330 - -1.0 952,330 - -0.1 952,330 - -0.0 952,330 - +1.2 952,330 - -0.2 952,330 - +0.4 952,330 - -0.9 952,331 + +1.3 952,331 + -1.7 952,331 + +0.8 952,332 - +0.5 952,364 + -0.6 952,365 - -1.1 952,399 + -0.5 952,399 + -0.5 952,399 + -0.4 952,399 + -1.2 952,400 - -0.7 952,454 + -0.5 952,454 + -0.1 952,454 + +0.5 952,454 + -1.0 952,454 + -0.5 952,455 - -0.8 952,455 - +1.0 952,455 - +0.0 952,455 - +0.2 952,455 - -0.3 952,499 + -0.7 952,499 + +0.1 952,499 + -0.4 952,499 + -1.3 952,499 + -0.9 952,499 + +0.1 952,499 + -0.0 952,499 + -0.8 952,499 + -0.1 952,499 + +0.5 952,499 + -2.0 952,499 + +2.9 952,500 - -1.2 952,500 - +0.2 952,500 - +0.6 952,500 - -0.6 952,500 - -0.6 952,500 - +2.0 952,500 - -0.2 952,500 - +0.1 952,500 - +1.6 952,500 - +2.2 952,500 - +0.3 952,500 - -0.5 952,670 + ABIE53_004749 0.24 +0.6 952,670 + ABIE53_004749 0.24 -0.5 952,670 + ABIE53_004749 0.24 -0.4 952,670 + ABIE53_004749 0.24 +0.1 952,671 - ABIE53_004749 0.24 +0.6 952,671 - ABIE53_004749 0.24 -0.6 952,940 + ABIE53_004749 0.48 -2.0 952,940 + ABIE53_004749 0.48 -0.5 952,985 + ABIE53_004749 0.52 +0.9 952,985 + ABIE53_004749 0.52 +0.0 952,986 - ABIE53_004749 0.52 +0.3 953,069 - ABIE53_004749 0.59 -0.6 953,084 + ABIE53_004749 0.61 -0.2 953,084 + ABIE53_004749 0.61 -0.1 953,084 + ABIE53_004749 0.61 +0.9 953,161 - ABIE53_004749 0.67 -0.9
Or see this region's nucleotide sequence