Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001228

Experiment: M9 with Isopropyl alcohol 21 g/L

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with Isopropyl alcohol 21 g/L
1,371,204	+		ABIE53_001226	0.81	-4.3
1,371,205	-		ABIE53_001226	0.81	-2.3
1,371,454	+				-0.7
1,371,454	+				-3.0
1,371,455	-				-0.5
1,371,455	-				-1.3
1,371,481	-				-3.3
1,371,481	-				-1.4
1,371,493	+				-1.4
1,371,520	+				+0.7
1,371,520	+				+1.2
1,371,535	+				-2.0
1,371,536	-				-1.8
1,371,553	+				-0.1
1,371,553	+				-1.2
1,371,553	+				-1.3
1,371,554	-				-2.2
1,371,554	-				-0.2
1,371,831	-		ABIE53_001227	0.51	-2.4
1,371,867	-		ABIE53_001227	0.58	+0.1
1,371,867	-		ABIE53_001227	0.58	-0.7
1,372,011	-		ABIE53_001227	0.84	-2.4
1,372,113	-				-1.0
1,372,346	-		ABIE53_001228	0.33	-0.6
1,372,397	-		ABIE53_001228	0.40	-5.4
1,372,397	-		ABIE53_001228	0.40	+2.3
1,372,397	-		ABIE53_001228	0.40	-2.6
1,372,397	-		ABIE53_001228	0.40	-5.1
1,372,427	-		ABIE53_001228	0.44	-2.7
1,372,427	-		ABIE53_001228	0.44	-2.8
1,372,427	-		ABIE53_001228	0.44	-4.0
1,372,427	-		ABIE53_001228	0.44	-1.2
1,372,640	-		ABIE53_001228	0.72	-1.9
1,372,861	+				+0.5
1,372,913	+				-0.5
1,373,074	+				-2.1
1,373,074	+				-2.6
1,373,222	-		ABIE53_001229	0.25	-1.5
1,373,240	+		ABIE53_001229	0.27	-4.7
1,373,240	+		ABIE53_001229	0.27	-0.8
1,373,241	-		ABIE53_001229	0.27	-1.3
1,373,241	-		ABIE53_001229	0.27	-3.5
1,373,414	+		ABIE53_001229	0.45	-2.5
1,373,414	+		ABIE53_001229	0.45	-1.7
1,373,414	+		ABIE53_001229	0.45	-5.5
1,373,414	+		ABIE53_001229	0.45	-3.0
1,373,415	-		ABIE53_001229	0.45	+0.0
1,373,415	-		ABIE53_001229	0.45	-0.9
1,373,417	-		ABIE53_001229	0.45	-1.8
1,373,543	+		ABIE53_001229	0.59	-2.5
1,373,543	+		ABIE53_001229	0.59	+0.5
1,373,544	-		ABIE53_001229	0.59	-0.1
1,373,621	+		ABIE53_001229	0.67	-4.6
1,373,622	-		ABIE53_001229	0.67	-5.2
1,373,657	+		ABIE53_001229	0.70	-1.9
1,373,657	+		ABIE53_001229	0.70	-0.4
1,373,657	+		ABIE53_001229	0.70	-4.3
1,373,657	+		ABIE53_001229	0.70	-2.3
1,373,657	+		ABIE53_001229	0.70	-4.5
1,373,658	-		ABIE53_001229	0.71	-2.0
1,373,658	-		ABIE53_001229	0.71	-1.5
1,373,658	-		ABIE53_001229	0.71	-2.1
1,373,785	+		ABIE53_001229	0.84	-1.4
1,373,785	+		ABIE53_001229	0.84	-5.5
1,373,785	+		ABIE53_001229	0.84	-1.3
1,373,785	+		ABIE53_001229	0.84	-1.7
1,373,786	-		ABIE53_001229	0.84	+0.5