Experiment: M9 with Ethanol 2.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004762 and ABIE53_004763 are separated by 189 nucleotides ABIE53_004763 and ABIE53_004764 are separated by 584 nucleotides
ABIE53_004762: ABIE53_004762 - citrate lyase subunit beta/citryl-CoA lyase, at 966,678 to 967,676
_004762
ABIE53_004763: ABIE53_004763 - malate dehydrogenase, at 967,866 to 968,849
_004763
ABIE53_004764: ABIE53_004764 - GntR family transcriptional regulator, at 969,434 to 970,234
_004764
Position (kb) 967
968
969 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 967.397 kb on - strand, within ABIE53_004762 at 967.741 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.898 kb on + strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.899 kb on - strand at 968.901 kb on - strand at 968.925 kb on - strand at 968.973 kb on - strand at 969.072 kb on + strand at 969.072 kb on + strand at 969.072 kb on + strand at 969.072 kb on + strand at 969.072 kb on + strand at 969.073 kb on - strand at 969.073 kb on - strand at 969.073 kb on - strand at 969.073 kb on - strand at 969.073 kb on - strand at 969.326 kb on + strand at 969.327 kb on - strand at 969.327 kb on - strand at 969.327 kb on - strand at 969.327 kb on - strand at 969.360 kb on - strand at 969.382 kb on - strand at 969.417 kb on + strand at 969.417 kb on + strand at 969.417 kb on + strand at 969.417 kb on + strand at 969.418 kb on - strand at 969.539 kb on + strand, within ABIE53_004764 at 969.539 kb on + strand, within ABIE53_004764 at 969.540 kb on - strand, within ABIE53_004764 at 969.610 kb on + strand, within ABIE53_004764 at 969.611 kb on - strand, within ABIE53_004764 at 969.635 kb on + strand, within ABIE53_004764 at 969.635 kb on + strand, within ABIE53_004764 at 969.635 kb on + strand, within ABIE53_004764 at 969.635 kb on + strand, within ABIE53_004764 at 969.635 kb on + strand, within ABIE53_004764 at 969.636 kb on - strand, within ABIE53_004764 at 969.636 kb on - strand, within ABIE53_004764 at 969.636 kb on - strand, within ABIE53_004764 at 969.662 kb on - strand, within ABIE53_004764 at 969.662 kb on - strand, within ABIE53_004764 at 969.771 kb on + strand, within ABIE53_004764 at 969.771 kb on + strand, within ABIE53_004764 at 969.771 kb on + strand, within ABIE53_004764
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with Ethanol 2.5 vol% remove 967,397 - ABIE53_004762 0.72 +0.1 967,741 + +3.1 968,898 + -0.2 968,898 + -0.1 968,898 + -0.0 968,898 + +0.8 968,898 + +0.2 968,898 + +0.3 968,898 + -1.6 968,898 + +0.5 968,898 + -1.5 968,898 + -0.0 968,898 + +1.5 968,898 + -0.4 968,899 - -0.3 968,899 - +0.5 968,899 - -1.9 968,899 - -0.7 968,899 - -0.1 968,899 - -2.2 968,899 - -0.8 968,899 - -0.7 968,899 - +0.2 968,901 - +0.1 968,925 - -1.1 968,973 - -0.2 969,072 + +0.4 969,072 + +0.1 969,072 + +0.3 969,072 + +0.4 969,072 + +0.2 969,073 - -0.4 969,073 - -0.8 969,073 - -0.2 969,073 - +0.2 969,073 - +0.3 969,326 + +1.5 969,327 - +0.5 969,327 - -0.4 969,327 - -0.5 969,327 - -1.1 969,360 - +0.0 969,382 - +1.6 969,417 + -1.2 969,417 + +0.9 969,417 + +0.8 969,417 + -1.0 969,418 - +0.5 969,539 + ABIE53_004764 0.13 -0.2 969,539 + ABIE53_004764 0.13 -2.7 969,540 - ABIE53_004764 0.13 -1.3 969,610 + ABIE53_004764 0.22 -1.1 969,611 - ABIE53_004764 0.22 -0.5 969,635 + ABIE53_004764 0.25 +1.1 969,635 + ABIE53_004764 0.25 -2.1 969,635 + ABIE53_004764 0.25 -1.1 969,635 + ABIE53_004764 0.25 -0.3 969,635 + ABIE53_004764 0.25 +0.2 969,636 - ABIE53_004764 0.25 -1.0 969,636 - ABIE53_004764 0.25 -0.7 969,636 - ABIE53_004764 0.25 -1.2 969,662 - ABIE53_004764 0.28 -0.7 969,662 - ABIE53_004764 0.28 -0.1 969,771 + ABIE53_004764 0.42 -1.2 969,771 + ABIE53_004764 0.42 -1.1 969,771 + ABIE53_004764 0.42 -1.6
Or see this region's nucleotide sequence