Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000427

Experiment: M9 with Ethanol 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_000426 and ABIE53_000427 are separated by 72 nucleotidesABIE53_000427 and ABIE53_000428 are separated by 57 nucleotidesABIE53_000428 and ABIE53_000429 overlap by 4 nucleotides ABIE53_000426: ABIE53_000426 - integrase/recombinase XerC, at 461,641 to 462,564 _000426 ABIE53_000427: ABIE53_000427 - uncharacterized protein YigA (DUF484 family), at 462,637 to 463,392 _000427 ABIE53_000428: ABIE53_000428 - diaminopimelate epimerase, at 463,450 to 464,352 _000428 ABIE53_000429: ABIE53_000429 - KDO2-lipid IV(A) lauroyltransferase, at 464,349 to 465,233 _000429 Position (kb) 462 463 464Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 461.678 kb on + strandat 461.714 kb on + strandat 461.714 kb on + strandat 461.714 kb on + strandat 461.715 kb on - strandat 462.326 kb on + strand, within ABIE53_000426at 462.327 kb on - strand, within ABIE53_000426at 462.411 kb on + strand, within ABIE53_000426at 462.536 kb on + strandat 462.536 kb on + strandat 462.536 kb on + strandat 462.537 kb on - strandat 462.537 kb on - strandat 462.537 kb on - strandat 462.927 kb on - strand, within ABIE53_000427at 462.998 kb on + strand, within ABIE53_000427at 462.999 kb on - strand, within ABIE53_000427at 462.999 kb on - strand, within ABIE53_000427at 463.089 kb on - strand, within ABIE53_000427at 463.332 kb on - strandat 463.332 kb on - strandat 463.332 kb on - strandat 463.375 kb on - strandat 463.375 kb on - strandat 463.375 kb on - strandat 463.414 kb on + strandat 463.414 kb on + strandat 463.414 kb on + strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strandat 463.415 kb on - strandat 464.319 kb on + strandat 464.320 kb on - strandat 464.320 kb on - strandat 464.320 kb on - strandat 464.320 kb on - strandat 464.320 kb on - strandat 464.320 kb on - strandat 464.324 kb on + strandat 464.324 kb on + strandat 464.324 kb on + strandat 464.324 kb on + strandat 464.324 kb on + strandat 464.324 kb on + strandat 464.324 kb on + strandat 464.324 kb on + strandat 464.324 kb on + strandat 464.324 kb on + strandat 464.325 kb on - strandat 464.325 kb on - strandat 464.325 kb on - strandat 464.325 kb on - strandat 464.325 kb on - strandat 464.325 kb on - strandat 464.325 kb on - strandat 464.325 kb on - strandat 464.325 kb on - strandat 464.325 kb on - strandat 464.325 kb on - strandat 464.353 kb on + strandat 464.353 kb on + strandat 464.353 kb on + strandat 464.354 kb on - strandat 464.354 kb on - strandat 464.354 kb on - strandat 464.354 kb on - strandat 464.354 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with Ethanol 2.5 vol%
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461,678 + +1.7
461,714 + -0.2
461,714 + -0.1
461,714 + -1.4
461,715 - -0.6
462,326 + ABIE53_000426 0.74 +0.7
462,327 - ABIE53_000426 0.74 +0.1
462,411 + ABIE53_000426 0.83 +2.1
462,536 + +1.7
462,536 + +0.0
462,536 + +1.0
462,537 - -0.8
462,537 - +0.2
462,537 - -0.5
462,927 - ABIE53_000427 0.38 +0.1
462,998 + ABIE53_000427 0.48 -0.6
462,999 - ABIE53_000427 0.48 -1.6
462,999 - ABIE53_000427 0.48 -2.1
463,089 - ABIE53_000427 0.60 -2.3
463,332 - -0.7
463,332 - -2.5
463,332 - -1.0
463,375 - -0.5
463,375 - +1.1
463,375 - -0.2
463,414 + +1.0
463,414 + -0.6
463,414 + -0.6
463,415 - -1.3
463,415 - -0.6
463,415 - -0.3
463,415 - -0.5
463,415 - +0.1
463,415 - +0.0
464,319 + -1.0
464,320 - -0.9
464,320 - -0.6
464,320 - -0.4
464,320 - -1.1
464,320 - -1.1
464,320 - +0.4
464,324 + +0.7
464,324 + -0.5
464,324 + +1.0
464,324 + -0.4
464,324 + -0.5
464,324 + -0.2
464,324 + -0.6
464,324 + -0.1
464,324 + -0.3
464,324 + -0.9
464,325 - -0.5
464,325 - -0.4
464,325 - +0.2
464,325 - +0.8
464,325 - +0.3
464,325 - -0.5
464,325 - +0.8
464,325 - -1.1
464,325 - +1.8
464,325 - +0.8
464,325 - +0.0
464,353 + -0.5
464,353 + -3.8
464,353 + -0.8
464,354 - -2.7
464,354 - -4.2
464,354 - -1.5
464,354 - -1.7
464,354 - -0.8

Or see this region's nucleotide sequence