Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004586

Experiment: R2A with Ethanol 2.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004584 and ABIE53_004585 are separated by 66 nucleotidesABIE53_004585 and ABIE53_004586 are separated by 150 nucleotidesABIE53_004586 and ABIE53_004587 are separated by 120 nucleotidesABIE53_004587 and ABIE53_004588 are separated by 222 nucleotides ABIE53_004584: ABIE53_004584 - hypothetical protein, at 769,377 to 769,688 _004584 ABIE53_004585: ABIE53_004585 - hypothetical protein, at 769,755 to 770,372 _004585 ABIE53_004586: ABIE53_004586 - ribosomal protein S18 acetylase RimI-like enzyme, at 770,523 to 770,996 _004586 ABIE53_004587: ABIE53_004587 - hypothetical protein, at 771,117 to 771,434 _004587 ABIE53_004588: ABIE53_004588 - aryl-alcohol dehydrogenase-like predicted oxidoreductase, at 771,657 to 772,652 _004588 Position (kb) 770 771Strain fitness (log2 ratio) -2 -1 0 1 2at 769.528 kb on + strand, within ABIE53_004584at 769.529 kb on - strand, within ABIE53_004584at 769.529 kb on - strand, within ABIE53_004584at 769.529 kb on - strand, within ABIE53_004584at 769.638 kb on - strand, within ABIE53_004584at 769.668 kb on + strandat 769.668 kb on + strandat 769.668 kb on + strandat 769.668 kb on + strandat 769.668 kb on + strandat 769.669 kb on - strandat 769.669 kb on - strandat 769.669 kb on - strandat 769.682 kb on + strandat 769.682 kb on + strandat 769.683 kb on - strandat 769.713 kb on + strandat 769.713 kb on + strandat 769.713 kb on + strandat 769.713 kb on + strandat 769.713 kb on + strandat 769.714 kb on - strandat 769.756 kb on + strandat 769.757 kb on - strandat 769.770 kb on + strandat 769.771 kb on - strandat 769.782 kb on - strandat 769.865 kb on + strand, within ABIE53_004585at 769.865 kb on + strand, within ABIE53_004585at 769.865 kb on + strand, within ABIE53_004585at 769.865 kb on + strand, within ABIE53_004585at 769.865 kb on + strand, within ABIE53_004585at 769.866 kb on - strand, within ABIE53_004585at 769.866 kb on - strand, within ABIE53_004585at 769.866 kb on - strand, within ABIE53_004585at 769.866 kb on - strand, within ABIE53_004585at 769.866 kb on - strand, within ABIE53_004585at 769.866 kb on - strand, within ABIE53_004585at 769.866 kb on - strand, within ABIE53_004585at 769.917 kb on + strand, within ABIE53_004585at 769.917 kb on + strand, within ABIE53_004585at 769.917 kb on + strand, within ABIE53_004585at 769.917 kb on + strand, within ABIE53_004585at 769.918 kb on - strand, within ABIE53_004585at 769.918 kb on - strand, within ABIE53_004585at 769.918 kb on - strand, within ABIE53_004585at 769.918 kb on - strand, within ABIE53_004585at 769.918 kb on - strand, within ABIE53_004585at 769.922 kb on + strand, within ABIE53_004585at 769.922 kb on + strand, within ABIE53_004585at 769.923 kb on - strand, within ABIE53_004585at 769.923 kb on - strand, within ABIE53_004585at 769.923 kb on - strand, within ABIE53_004585at 769.923 kb on - strand, within ABIE53_004585at 769.923 kb on - strand, within ABIE53_004585at 770.066 kb on - strand, within ABIE53_004585at 770.066 kb on - strand, within ABIE53_004585at 770.142 kb on + strand, within ABIE53_004585at 770.142 kb on + strand, within ABIE53_004585at 770.208 kb on + strand, within ABIE53_004585at 770.208 kb on + strand, within ABIE53_004585at 770.208 kb on + strand, within ABIE53_004585at 770.208 kb on + strand, within ABIE53_004585at 770.209 kb on - strand, within ABIE53_004585at 770.209 kb on - strand, within ABIE53_004585at 770.290 kb on + strand, within ABIE53_004585at 770.290 kb on + strand, within ABIE53_004585at 770.290 kb on + strand, within ABIE53_004585at 770.290 kb on + strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.291 kb on - strand, within ABIE53_004585at 770.303 kb on + strand, within ABIE53_004585at 770.303 kb on + strand, within ABIE53_004585at 770.304 kb on - strand, within ABIE53_004585at 770.304 kb on - strand, within ABIE53_004585at 770.354 kb on + strandat 770.402 kb on + strandat 770.402 kb on + strandat 770.403 kb on - strandat 770.403 kb on - strandat 770.403 kb on - strandat 770.452 kb on + strandat 770.491 kb on + strandat 770.491 kb on + strandat 770.491 kb on + strandat 770.492 kb on - strandat 770.492 kb on - strandat 770.679 kb on + strand, within ABIE53_004586at 770.679 kb on + strand, within ABIE53_004586at 770.679 kb on + strand, within ABIE53_004586at 770.679 kb on + strand, within ABIE53_004586at 770.902 kb on - strand, within ABIE53_004586at 771.006 kb on - strandat 771.006 kb on - strandat 771.101 kb on + strandat 771.129 kb on - strandat 771.129 kb on - strandat 771.130 kb on + strandat 771.131 kb on - strandat 771.165 kb on - strand, within ABIE53_004587at 771.165 kb on - strand, within ABIE53_004587at 771.179 kb on + strand, within ABIE53_004587at 771.179 kb on + strand, within ABIE53_004587at 771.179 kb on + strand, within ABIE53_004587at 771.179 kb on + strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.180 kb on - strand, within ABIE53_004587at 771.190 kb on + strand, within ABIE53_004587at 771.190 kb on + strand, within ABIE53_004587at 771.191 kb on - strand, within ABIE53_004587at 771.191 kb on - strand, within ABIE53_004587at 771.250 kb on + strand, within ABIE53_004587at 771.250 kb on + strand, within ABIE53_004587at 771.250 kb on + strand, within ABIE53_004587at 771.251 kb on - strand, within ABIE53_004587at 771.259 kb on + strand, within ABIE53_004587at 771.259 kb on + strand, within ABIE53_004587at 771.259 kb on + strand, within ABIE53_004587at 771.293 kb on + strand, within ABIE53_004587at 771.293 kb on + strand, within ABIE53_004587at 771.294 kb on - strand, within ABIE53_004587at 771.295 kb on + strand, within ABIE53_004587at 771.295 kb on + strand, within ABIE53_004587at 771.295 kb on + strand, within ABIE53_004587at 771.295 kb on + strand, within ABIE53_004587at 771.295 kb on + strand, within ABIE53_004587at 771.296 kb on - strand, within ABIE53_004587at 771.296 kb on - strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.333 kb on + strand, within ABIE53_004587at 771.334 kb on - strand, within ABIE53_004587at 771.334 kb on - strand, within ABIE53_004587at 771.334 kb on - strand, within ABIE53_004587at 771.409 kb on - strandat 771.498 kb on + strandat 771.498 kb on + strandat 771.539 kb on + strandat 771.540 kb on - strandat 771.540 kb on - strandat 771.540 kb on - strandat 771.592 kb on - strandat 771.592 kb on - strandat 771.813 kb on + strand, within ABIE53_004588

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Ethanol 2.5 vol%
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769,528 + ABIE53_004584 0.48 +0.9
769,529 - ABIE53_004584 0.49 -0.8
769,529 - ABIE53_004584 0.49 +0.8
769,529 - ABIE53_004584 0.49 -0.4
769,638 - ABIE53_004584 0.84 -0.8
769,668 + -0.8
769,668 + -2.5
769,668 + -0.5
769,668 + +0.4
769,668 + -1.0
769,669 - -1.9
769,669 - +0.0
769,669 - -1.2
769,682 + -0.4
769,682 + +1.3
769,683 - +1.7
769,713 + +0.0
769,713 + -1.8
769,713 + +0.7
769,713 + -0.9
769,713 + -1.3
769,714 - +0.0
769,756 + -0.6
769,757 - -0.2
769,770 + -0.6
769,771 - -0.3
769,782 - +1.2
769,865 + ABIE53_004585 0.18 -0.9
769,865 + ABIE53_004585 0.18 -0.6
769,865 + ABIE53_004585 0.18 -0.9
769,865 + ABIE53_004585 0.18 -1.2
769,865 + ABIE53_004585 0.18 -1.6
769,866 - ABIE53_004585 0.18 -0.6
769,866 - ABIE53_004585 0.18 +1.4
769,866 - ABIE53_004585 0.18 -0.4
769,866 - ABIE53_004585 0.18 +0.5
769,866 - ABIE53_004585 0.18 -0.3
769,866 - ABIE53_004585 0.18 +0.1
769,866 - ABIE53_004585 0.18 +2.1
769,917 + ABIE53_004585 0.26 -0.7
769,917 + ABIE53_004585 0.26 -0.9
769,917 + ABIE53_004585 0.26 +1.5
769,917 + ABIE53_004585 0.26 +0.1
769,918 - ABIE53_004585 0.26 -0.8
769,918 - ABIE53_004585 0.26 +0.3
769,918 - ABIE53_004585 0.26 +0.8
769,918 - ABIE53_004585 0.26 -0.5
769,918 - ABIE53_004585 0.26 -0.7
769,922 + ABIE53_004585 0.27 -0.4
769,922 + ABIE53_004585 0.27 -0.8
769,923 - ABIE53_004585 0.27 -2.5
769,923 - ABIE53_004585 0.27 -0.5
769,923 - ABIE53_004585 0.27 -0.0
769,923 - ABIE53_004585 0.27 +0.6
769,923 - ABIE53_004585 0.27 -1.6
770,066 - ABIE53_004585 0.50 -0.4
770,066 - ABIE53_004585 0.50 -0.6
770,142 + ABIE53_004585 0.63 +0.4
770,142 + ABIE53_004585 0.63 -0.5
770,208 + ABIE53_004585 0.73 +1.9
770,208 + ABIE53_004585 0.73 +0.3
770,208 + ABIE53_004585 0.73 -0.6
770,208 + ABIE53_004585 0.73 +0.9
770,209 - ABIE53_004585 0.73 -0.6
770,209 - ABIE53_004585 0.73 +0.1
770,290 + ABIE53_004585 0.87 +0.2
770,290 + ABIE53_004585 0.87 -0.7
770,290 + ABIE53_004585 0.87 +0.3
770,290 + ABIE53_004585 0.87 -0.8
770,291 - ABIE53_004585 0.87 -1.2
770,291 - ABIE53_004585 0.87 -1.8
770,291 - ABIE53_004585 0.87 -1.1
770,291 - ABIE53_004585 0.87 +1.0
770,291 - ABIE53_004585 0.87 -2.6
770,291 - ABIE53_004585 0.87 -1.9
770,303 + ABIE53_004585 0.89 -0.6
770,303 + ABIE53_004585 0.89 -0.3
770,304 - ABIE53_004585 0.89 +0.1
770,304 - ABIE53_004585 0.89 -1.7
770,354 + +0.5
770,402 + +0.5
770,402 + -0.6
770,403 - -0.8
770,403 - -0.1
770,403 - +1.1
770,452 + -0.8
770,491 + +0.3
770,491 + -0.8
770,491 + +0.2
770,492 - -0.1
770,492 - +0.9
770,679 + ABIE53_004586 0.33 -1.5
770,679 + ABIE53_004586 0.33 -0.6
770,679 + ABIE53_004586 0.33 +0.1
770,679 + ABIE53_004586 0.33 -0.7
770,902 - ABIE53_004586 0.80 -0.8
771,006 - +1.4
771,006 - +0.2
771,101 + -0.8
771,129 - +1.4
771,129 - +0.7
771,130 + -0.3
771,131 - -0.2
771,165 - ABIE53_004587 0.15 +0.2
771,165 - ABIE53_004587 0.15 -0.2
771,179 + ABIE53_004587 0.19 -0.6
771,179 + ABIE53_004587 0.19 -0.9
771,179 + ABIE53_004587 0.19 +0.4
771,179 + ABIE53_004587 0.19 +0.5
771,180 - ABIE53_004587 0.20 +1.2
771,180 - ABIE53_004587 0.20 +0.3
771,180 - ABIE53_004587 0.20 +0.5
771,180 - ABIE53_004587 0.20 +1.5
771,180 - ABIE53_004587 0.20 +2.2
771,180 - ABIE53_004587 0.20 +0.2
771,180 - ABIE53_004587 0.20 -0.7
771,180 - ABIE53_004587 0.20 +1.4
771,190 + ABIE53_004587 0.23 -0.4
771,190 + ABIE53_004587 0.23 +0.1
771,191 - ABIE53_004587 0.23 -0.4
771,191 - ABIE53_004587 0.23 -0.5
771,250 + ABIE53_004587 0.42 +0.7
771,250 + ABIE53_004587 0.42 +0.3
771,250 + ABIE53_004587 0.42 -0.3
771,251 - ABIE53_004587 0.42 -2.3
771,259 + ABIE53_004587 0.45 -0.1
771,259 + ABIE53_004587 0.45 +0.8
771,259 + ABIE53_004587 0.45 -0.1
771,293 + ABIE53_004587 0.55 -0.2
771,293 + ABIE53_004587 0.55 -0.5
771,294 - ABIE53_004587 0.56 -0.0
771,295 + ABIE53_004587 0.56 -0.6
771,295 + ABIE53_004587 0.56 -0.8
771,295 + ABIE53_004587 0.56 -0.8
771,295 + ABIE53_004587 0.56 -2.5
771,295 + ABIE53_004587 0.56 -0.8
771,296 - ABIE53_004587 0.56 -2.5
771,296 - ABIE53_004587 0.56 +1.0
771,333 + ABIE53_004587 0.68 -1.5
771,333 + ABIE53_004587 0.68 -0.0
771,333 + ABIE53_004587 0.68 +1.1
771,333 + ABIE53_004587 0.68 +0.2
771,333 + ABIE53_004587 0.68 -0.5
771,333 + ABIE53_004587 0.68 -0.4
771,333 + ABIE53_004587 0.68 -0.1
771,334 - ABIE53_004587 0.68 +0.1
771,334 - ABIE53_004587 0.68 +0.8
771,334 - ABIE53_004587 0.68 -0.7
771,409 - -1.2
771,498 + +1.0
771,498 + +0.5
771,539 + -0.1
771,540 - +0.6
771,540 - +0.3
771,540 - -0.4
771,592 - +0.7
771,592 - -0.2
771,813 + ABIE53_004588 0.16 -0.3

Or see this region's nucleotide sequence