Experiment: R2A with Ethanol 2.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003879 and ABIE53_003880 overlap by 4 nucleotides ABIE53_003880 and ABIE53_003881 are separated by 257 nucleotides ABIE53_003881 and ABIE53_003882 are separated by 12 nucleotides
ABIE53_003879: ABIE53_003879 - uncharacterized protein YgbK (DUF1537 family), at 18,669 to 20,015
_003879
ABIE53_003880: ABIE53_003880 - 2-keto-3-deoxygluconate permease, at 20,012 to 21,169
_003880
ABIE53_003881: ABIE53_003881 - dihydroxyacetone kinase-like protein, at 21,427 to 22,053
_003881
ABIE53_003882: ABIE53_003882 - dihydroxyacetone kinase-like protein, at 22,066 to 23,076
_003882
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 19.041 kb on + strand, within ABIE53_003879 at 19.042 kb on - strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.222 kb on - strand, within ABIE53_003879 at 19.222 kb on - strand, within ABIE53_003879 at 19.622 kb on + strand, within ABIE53_003879 at 19.622 kb on + strand, within ABIE53_003879 at 19.623 kb on - strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.942 kb on + strand at 20.042 kb on + strand at 20.043 kb on - strand at 20.149 kb on - strand, within ABIE53_003880 at 20.260 kb on - strand, within ABIE53_003880 at 20.260 kb on - strand, within ABIE53_003880 at 20.332 kb on + strand, within ABIE53_003880 at 20.332 kb on + strand, within ABIE53_003880 at 20.332 kb on + strand, within ABIE53_003880 at 20.333 kb on - strand, within ABIE53_003880 at 20.333 kb on - strand, within ABIE53_003880 at 20.333 kb on - strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.560 kb on - strand, within ABIE53_003880 at 20.560 kb on - strand, within ABIE53_003880 at 20.586 kb on + strand, within ABIE53_003880 at 20.586 kb on + strand, within ABIE53_003880 at 20.587 kb on - strand, within ABIE53_003880 at 20.607 kb on + strand, within ABIE53_003880 at 20.607 kb on + strand, within ABIE53_003880 at 20.607 kb on + strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.921 kb on + strand, within ABIE53_003880 at 20.922 kb on - strand, within ABIE53_003880 at 20.922 kb on - strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880 at 21.065 kb on - strand at 21.065 kb on - strand at 21.136 kb on + strand at 21.137 kb on - strand at 21.163 kb on + strand at 21.164 kb on - strand at 21.164 kb on - strand at 21.231 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.262 kb on - strand at 21.262 kb on - strand at 21.262 kb on - strand at 21.262 kb on - strand at 21.262 kb on - strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.339 kb on + strand at 21.339 kb on + strand at 21.339 kb on + strand at 21.428 kb on + strand at 21.470 kb on + strand at 21.470 kb on + strand at 21.470 kb on + strand at 21.470 kb on + strand at 21.471 kb on - strand at 21.471 kb on - strand at 21.471 kb on - strand at 21.471 kb on - strand at 21.471 kb on - strand at 21.471 kb on - strand at 21.757 kb on + strand, within ABIE53_003881 at 22.045 kb on + strand at 22.045 kb on + strand at 22.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Ethanol 2.5 vol% remove 19,041 + ABIE53_003879 0.28 -1.2 19,042 - ABIE53_003879 0.28 -0.3 19,221 + ABIE53_003879 0.41 +0.4 19,221 + ABIE53_003879 0.41 -0.8 19,221 + ABIE53_003879 0.41 +0.7 19,221 + ABIE53_003879 0.41 +0.5 19,221 + ABIE53_003879 0.41 +0.5 19,222 - ABIE53_003879 0.41 -0.2 19,222 - ABIE53_003879 0.41 -2.5 19,622 + ABIE53_003879 0.71 +0.7 19,622 + ABIE53_003879 0.71 -0.7 19,623 - ABIE53_003879 0.71 -1.1 19,780 + ABIE53_003879 0.82 +0.3 19,780 + ABIE53_003879 0.82 -0.5 19,780 + ABIE53_003879 0.82 -0.9 19,780 + ABIE53_003879 0.82 +0.8 19,781 - ABIE53_003879 0.83 +2.0 19,781 - ABIE53_003879 0.83 -0.8 19,781 - ABIE53_003879 0.83 -0.3 19,781 - ABIE53_003879 0.83 +0.2 19,942 + -0.8 20,042 + -0.1 20,043 - -1.1 20,149 - ABIE53_003880 0.12 -1.4 20,260 - ABIE53_003880 0.21 +0.0 20,260 - ABIE53_003880 0.21 -0.9 20,332 + ABIE53_003880 0.28 -0.7 20,332 + ABIE53_003880 0.28 +1.6 20,332 + ABIE53_003880 0.28 -1.6 20,333 - ABIE53_003880 0.28 +0.8 20,333 - ABIE53_003880 0.28 -0.4 20,333 - ABIE53_003880 0.28 -0.8 20,459 + ABIE53_003880 0.39 -0.0 20,459 + ABIE53_003880 0.39 -0.1 20,459 + ABIE53_003880 0.39 -1.8 20,459 + ABIE53_003880 0.39 +3.0 20,459 + ABIE53_003880 0.39 +1.0 20,459 + ABIE53_003880 0.39 -1.5 20,459 + ABIE53_003880 0.39 +1.9 20,459 + ABIE53_003880 0.39 +0.9 20,459 + ABIE53_003880 0.39 +0.6 20,460 - ABIE53_003880 0.39 -0.2 20,460 - ABIE53_003880 0.39 -0.1 20,460 - ABIE53_003880 0.39 -1.0 20,460 - ABIE53_003880 0.39 +0.2 20,460 - ABIE53_003880 0.39 -0.5 20,559 + ABIE53_003880 0.47 +0.3 20,559 + ABIE53_003880 0.47 -0.4 20,559 + ABIE53_003880 0.47 -0.5 20,559 + ABIE53_003880 0.47 -0.6 20,559 + ABIE53_003880 0.47 +0.0 20,560 - ABIE53_003880 0.47 -0.8 20,560 - ABIE53_003880 0.47 -1.5 20,586 + ABIE53_003880 0.50 -0.5 20,586 + ABIE53_003880 0.50 -0.2 20,587 - ABIE53_003880 0.50 +0.1 20,607 + ABIE53_003880 0.51 -0.6 20,607 + ABIE53_003880 0.51 +0.6 20,607 + ABIE53_003880 0.51 -0.8 20,608 - ABIE53_003880 0.51 +1.2 20,608 - ABIE53_003880 0.51 -0.7 20,608 - ABIE53_003880 0.51 -0.5 20,608 - ABIE53_003880 0.51 -0.7 20,608 - ABIE53_003880 0.51 -0.4 20,608 - ABIE53_003880 0.51 -0.7 20,608 - ABIE53_003880 0.51 -0.2 20,778 + ABIE53_003880 0.66 -1.5 20,778 + ABIE53_003880 0.66 +2.0 20,778 + ABIE53_003880 0.66 +0.1 20,778 + ABIE53_003880 0.66 -0.8 20,778 + ABIE53_003880 0.66 -0.3 20,778 + ABIE53_003880 0.66 +0.5 20,778 + ABIE53_003880 0.66 -0.9 20,778 + ABIE53_003880 0.66 -1.3 20,779 - ABIE53_003880 0.66 +1.6 20,779 - ABIE53_003880 0.66 -1.4 20,779 - ABIE53_003880 0.66 -1.1 20,779 - ABIE53_003880 0.66 -0.5 20,779 - ABIE53_003880 0.66 -0.4 20,779 - ABIE53_003880 0.66 +1.7 20,779 - ABIE53_003880 0.66 +1.8 20,779 - ABIE53_003880 0.66 +0.1 20,779 - ABIE53_003880 0.66 -0.0 20,820 + ABIE53_003880 0.70 -0.8 20,820 + ABIE53_003880 0.70 -0.3 20,820 + ABIE53_003880 0.70 -0.3 20,820 + ABIE53_003880 0.70 +0.0 20,821 - ABIE53_003880 0.70 -0.4 20,821 - ABIE53_003880 0.70 -0.9 20,821 - ABIE53_003880 0.70 +0.2 20,821 - ABIE53_003880 0.70 -2.0 20,821 - ABIE53_003880 0.70 -0.0 20,821 - ABIE53_003880 0.70 +0.6 20,921 + ABIE53_003880 0.78 +1.6 20,922 - ABIE53_003880 0.79 -0.6 20,922 - ABIE53_003880 0.79 -1.8 20,981 + ABIE53_003880 0.84 -1.0 20,981 + ABIE53_003880 0.84 +1.0 20,981 + ABIE53_003880 0.84 +0.5 20,981 + ABIE53_003880 0.84 +0.1 20,982 - ABIE53_003880 0.84 -1.1 20,982 - ABIE53_003880 0.84 +1.5 20,982 - ABIE53_003880 0.84 -0.3 20,982 - ABIE53_003880 0.84 -0.6 21,065 - -1.4 21,065 - +0.1 21,136 + -2.0 21,137 - -0.5 21,163 + -0.4 21,164 - -0.9 21,164 - -1.0 21,231 + -0.9 21,261 + +0.1 21,261 + -0.8 21,261 + -0.3 21,261 + -1.0 21,261 + +0.1 21,261 + -1.4 21,261 + -1.4 21,261 + -2.0 21,261 + +0.7 21,262 - +0.8 21,262 - -0.7 21,262 - -0.5 21,262 - -0.3 21,262 - +1.2 21,265 + +0.2 21,265 + -0.4 21,265 + -0.4 21,265 + -0.3 21,265 + -0.9 21,265 + -0.4 21,265 + +0.4 21,265 + +0.5 21,265 + +0.1 21,265 + +0.6 21,265 + -1.0 21,265 + -0.2 21,265 + +0.2 21,265 + +0.4 21,265 + -0.4 21,266 - +0.1 21,266 - -0.1 21,266 - -0.2 21,266 - -0.6 21,266 - +1.2 21,266 - -1.0 21,266 - -0.6 21,266 - +0.9 21,266 - +0.4 21,266 - -1.0 21,266 - -0.2 21,339 + +0.1 21,339 + +2.0 21,339 + +1.3 21,428 + +1.3 21,470 + -0.5 21,470 + -0.2 21,470 + -0.8 21,470 + -0.2 21,471 - +0.2 21,471 - +0.3 21,471 - -0.1 21,471 - +1.0 21,471 - -0.5 21,471 - -0.7 21,757 + ABIE53_003881 0.53 -0.4 22,045 + -0.1 22,045 + -0.8 22,046 - -0.6
Or see this region's nucleotide sequence