Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003175

Experiment: R2A with Ethanol 2.5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Ethanol 2.5 vol%
3,589,618	+		ABIE53_003173	0.65	-1.4
3,589,619	-		ABIE53_003173	0.65	+0.3
3,589,741	+		ABIE53_003173	0.77	-1.3
3,589,742	-		ABIE53_003173	0.77	-0.7
3,589,940	+				+0.1
3,589,940	+				+0.3
3,589,941	-				-1.7
3,590,011	+				+0.5
3,590,012	-				-0.5
3,590,012	-				-1.2
3,590,012	-				-0.0
3,590,077	-		ABIE53_003174	0.26	-0.2
3,590,077	-		ABIE53_003174	0.26	-0.5
3,590,077	-		ABIE53_003174	0.26	-0.2
3,590,329	+				-0.5
3,590,330	-				-0.3
3,590,330	-				-1.8
3,590,330	-				-0.4
3,590,349	+				+0.1
3,590,350	-				-0.3
3,590,350	-				-0.5
3,590,350	-				-0.8
3,590,350	-				-0.7
3,590,353	+				-0.6
3,590,354	-				+0.1
3,590,354	-				-1.8
3,590,354	-				-0.7
3,590,354	-				-0.8
3,590,363	+				-0.3
3,590,363	+				-0.5
3,590,453	+				+0.7
3,590,453	+				+1.6
3,590,454	-				+0.2
3,590,477	+				-1.3
3,590,477	+				-1.8
3,590,477	+				+0.3
3,590,478	-				-1.5
3,590,478	-				-2.0
3,590,478	-				-1.2
3,590,785	+		ABIE53_003175	0.17	+0.1
3,590,785	+		ABIE53_003175	0.17	-1.5
3,590,785	+		ABIE53_003175	0.17	-2.0
3,590,785	+		ABIE53_003175	0.17	-1.0
3,590,785	+		ABIE53_003175	0.17	-0.7
3,590,785	+		ABIE53_003175	0.17	-1.8
3,590,785	+		ABIE53_003175	0.17	-0.9
3,590,785	+		ABIE53_003175	0.17	+0.8
3,590,786	-		ABIE53_003175	0.17	-1.0
3,590,786	-		ABIE53_003175	0.17	-2.5
3,590,786	-		ABIE53_003175	0.17	-1.3
3,590,803	+		ABIE53_003175	0.18	-2.2
3,590,803	+		ABIE53_003175	0.18	-0.1
3,590,803	+		ABIE53_003175	0.18	-2.0
3,590,804	-		ABIE53_003175	0.18	-2.7
3,591,105	+		ABIE53_003175	0.35	-1.5
3,591,105	+		ABIE53_003175	0.35	-3.7
3,591,106	-		ABIE53_003175	0.35	-3.8
3,591,106	-		ABIE53_003175	0.35	-2.6
3,591,193	+		ABIE53_003175	0.39	-2.7
3,591,193	+		ABIE53_003175	0.39	-2.6
3,591,193	+		ABIE53_003175	0.39	-0.7
3,591,193	+		ABIE53_003175	0.39	-0.2
3,591,193	+		ABIE53_003175	0.39	-1.9
3,591,193	+		ABIE53_003175	0.39	+0.1
3,591,193	+		ABIE53_003175	0.39	-2.1
3,591,193	+		ABIE53_003175	0.39	-0.9
3,591,194	-		ABIE53_003175	0.39	-2.9
3,591,194	-		ABIE53_003175	0.39	-2.9
3,591,194	-		ABIE53_003175	0.39	-2.7
3,591,194	-		ABIE53_003175	0.39	-2.8
3,591,194	-		ABIE53_003175	0.39	-2.1
3,591,194	-		ABIE53_003175	0.39	-2.4
3,591,194	-		ABIE53_003175	0.39	-1.6
3,591,194	-		ABIE53_003175	0.39	-1.0
3,591,194	-		ABIE53_003175	0.39	-2.2
3,591,194	-		ABIE53_003175	0.39	-1.8
3,591,246	+		ABIE53_003175	0.42	-1.3
3,591,247	+		ABIE53_003175	0.42	-0.7
3,591,247	+		ABIE53_003175	0.42	-1.2
3,591,248	-		ABIE53_003175	0.42	-2.4
3,591,248	-		ABIE53_003175	0.42	-2.7
3,591,248	-		ABIE53_003175	0.42	-1.5
3,591,248	-		ABIE53_003175	0.42	-2.4
3,591,396	+		ABIE53_003175	0.50	-1.4
3,591,396	+		ABIE53_003175	0.50	-0.4
3,591,396	+		ABIE53_003175	0.50	-1.2
3,591,396	+		ABIE53_003175	0.50	-2.0
3,591,396	+		ABIE53_003175	0.50	-1.2
3,591,397	-		ABIE53_003175	0.50	-1.8
3,591,397	-		ABIE53_003175	0.50	-1.7
3,591,397	-		ABIE53_003175	0.50	-1.8
3,591,454	+		ABIE53_003175	0.53	-1.7
3,591,454	+		ABIE53_003175	0.53	-1.8
3,591,455	-		ABIE53_003175	0.53	-2.8
3,591,455	-		ABIE53_003175	0.53	-0.6
3,591,570	+		ABIE53_003175	0.60	-2.9
3,591,570	+		ABIE53_003175	0.60	-1.4
3,591,570	+		ABIE53_003175	0.60	-0.4
3,591,799	+		ABIE53_003175	0.72	-2.5
3,591,799	+		ABIE53_003175	0.72	-1.1
3,591,799	+		ABIE53_003175	0.72	-0.7
3,591,800	-		ABIE53_003175	0.72	-1.5
3,591,800	-		ABIE53_003175	0.72	-2.0
3,591,864	+		ABIE53_003175	0.76	-2.4
3,591,864	+		ABIE53_003175	0.76	-2.0
3,591,864	+		ABIE53_003175	0.76	-2.7
3,591,864	+		ABIE53_003175	0.76	-1.7
3,591,864	+		ABIE53_003175	0.76	-1.1
3,591,865	-		ABIE53_003175	0.76	-3.7
3,591,865	-		ABIE53_003175	0.76	-3.4
3,591,865	-		ABIE53_003175	0.76	-3.3
3,591,865	-		ABIE53_003175	0.76	-3.0
3,591,865	-		ABIE53_003175	0.76	-2.6
3,591,865	-		ABIE53_003175	0.76	-2.3
3,591,865	-		ABIE53_003175	0.76	-1.0
3,591,865	-		ABIE53_003175	0.76	-2.1
3,592,119	+		ABIE53_003175	0.89	-2.0
3,592,119	+		ABIE53_003175	0.89	-1.3
3,592,120	-		ABIE53_003175	0.89	-2.8
3,592,120	-		ABIE53_003175	0.89	-2.2
3,592,225	+				-3.0
3,592,419	+				+0.3
3,592,419	+				+1.3
3,592,419	+				+3.7
3,592,419	+				-0.5
3,592,419	+				+0.5
3,592,420	-				-0.4
3,592,420	-				+0.1
3,592,420	-				-0.6
3,592,420	-				-0.9
3,592,420	-				-2.3
3,592,420	-				+0.3
3,592,420	-				-0.0
3,592,471	+				-0.5
3,592,472	-				+0.3
3,592,472	-				-0.7
3,592,472	-				+1.2
3,592,525	+				-1.5
3,592,525	+				-0.5
3,592,525	+				-0.1
3,592,525	+				-0.2
3,592,525	+				-1.9
3,592,525	+				-0.2
3,592,525	+				+2.1
3,592,525	+				-0.2
3,592,525	+				+1.3
3,592,525	+				-0.9
3,592,525	+				+0.5
3,592,525	+				-0.8
3,592,526	-				-0.9
3,592,526	-				-0.2
3,592,526	-				-1.2
3,592,526	-				-0.8
3,592,526	-				-1.2
3,592,526	-				+0.2
3,592,526	-				+0.4
3,592,526	-				+0.2
3,592,552	+				-1.4
3,592,552	+				-0.8
3,592,553	-				+0.3
3,592,690	+		ABIE53_003176	0.12	+0.7
3,592,690	+		ABIE53_003176	0.12	-0.4
3,592,690	+		ABIE53_003176	0.12	-2.8
3,592,690	+		ABIE53_003176	0.12	+0.3
3,592,690	+		ABIE53_003176	0.12	-0.6
3,592,690	+		ABIE53_003176	0.12	-0.7
3,592,690	+		ABIE53_003176	0.12	+0.1
3,592,690	+		ABIE53_003176	0.12	-0.1
3,592,691	-		ABIE53_003176	0.12	-0.7
3,592,691	-		ABIE53_003176	0.12	-0.3
3,592,691	-		ABIE53_003176	0.12	+0.1
3,592,691	-		ABIE53_003176	0.12	-0.5
3,592,691	-		ABIE53_003176	0.12	-0.7
3,592,691	-		ABIE53_003176	0.12	-0.4
3,592,691	-		ABIE53_003176	0.12	-0.3
3,592,765	+		ABIE53_003176	0.18	+1.1
3,592,765	+		ABIE53_003176	0.18	-0.3
3,592,765	+		ABIE53_003176	0.18	-0.3
3,592,765	+		ABIE53_003176	0.18	+1.0
3,592,766	-		ABIE53_003176	0.18	-1.0
3,592,766	-		ABIE53_003176	0.18	-0.3
3,592,766	-		ABIE53_003176	0.18	+0.3
3,592,766	-		ABIE53_003176	0.18	-0.7
3,592,766	-		ABIE53_003176	0.18	-0.3
3,592,766	-		ABIE53_003176	0.18	+0.3
3,592,766	-		ABIE53_003176	0.18	-0.2
3,592,766	-		ABIE53_003176	0.18	+1.7
3,592,766	-		ABIE53_003176	0.18	-0.0
3,592,774	+		ABIE53_003176	0.18	-2.2
3,592,774	+		ABIE53_003176	0.18	+0.0
3,592,775	-		ABIE53_003176	0.18	-0.5
3,592,852	+		ABIE53_003176	0.24	-0.3
3,592,877	+		ABIE53_003176	0.25	-0.2
3,592,878	-		ABIE53_003176	0.26	+0.9
3,592,961	+		ABIE53_003176	0.31	+0.3
3,592,962	-		ABIE53_003176	0.31	-0.3
3,593,029	+		ABIE53_003176	0.36	+1.2
3,593,030	-		ABIE53_003176	0.36	+2.1
3,593,030	-		ABIE53_003176	0.36	+0.3
3,593,030	-		ABIE53_003176	0.36	-0.7
3,593,044	+		ABIE53_003176	0.37	-0.9
3,593,044	+		ABIE53_003176	0.37	-2.4
3,593,044	+		ABIE53_003176	0.37	-0.5
3,593,044	+		ABIE53_003176	0.37	-1.1
3,593,044	+		ABIE53_003176	0.37	+0.4
3,593,045	-		ABIE53_003176	0.37	+0.2
3,593,045	-		ABIE53_003176	0.37	-0.9
3,593,045	-		ABIE53_003176	0.37	-0.2
3,593,045	-		ABIE53_003176	0.37	-0.4
3,593,045	-		ABIE53_003176	0.37	-0.9
3,593,045	-		ABIE53_003176	0.37	-1.0
3,593,190	+		ABIE53_003176	0.47	-2.4
3,593,191	-		ABIE53_003176	0.47	+0.5
3,593,191	-		ABIE53_003176	0.47	-0.8