Experiment: R2A with Ethanol 2.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000402 and ABIE53_000403 are separated by 139 nucleotides ABIE53_000403 and ABIE53_000404 overlap by 4 nucleotides ABIE53_000404 and ABIE53_000405 are separated by 151 nucleotides
ABIE53_000402: ABIE53_000402 - penicillin-binding protein 2, at 433,062 to 435,581
_000402
ABIE53_000403: ABIE53_000403 - rod shape-determining protein MreD, at 435,721 to 436,233
_000403
ABIE53_000404: ABIE53_000404 - rod shape-determining protein MreC, at 436,230 to 437,354
_000404
ABIE53_000405: ABIE53_000405 - rod shape-determining protein MreB, at 437,506 to 438,549
_000405
Position (kb) 436
437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.722 kb on + strand at 435.723 kb on - strand at 435.828 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 436.218 kb on - strand at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 437.508 kb on - strand at 437.508 kb on - strand at 437.514 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Ethanol 2.5 vol% remove 435,686 - -2.8 435,686 - +0.5 435,686 - -2.2 435,686 - -1.3 435,686 - -0.4 435,686 - -0.2 435,686 - +0.3 435,686 - +0.5 435,722 + -1.5 435,723 - +0.1 435,828 - ABIE53_000403 0.21 +0.5 435,881 - ABIE53_000403 0.31 +3.7 435,881 - ABIE53_000403 0.31 +3.7 435,881 - ABIE53_000403 0.31 +3.7 435,881 - ABIE53_000403 0.31 +2.7 435,881 - ABIE53_000403 0.31 +2.7 436,218 - +1.2 436,353 - ABIE53_000404 0.11 -2.1 436,353 - ABIE53_000404 0.11 -0.3 436,353 - ABIE53_000404 0.11 +0.7 436,353 - ABIE53_000404 0.11 -0.2 436,353 - ABIE53_000404 0.11 -0.2 436,353 - ABIE53_000404 0.11 +0.0 436,532 - ABIE53_000404 0.27 -0.1 436,532 - ABIE53_000404 0.27 +1.5 436,532 - ABIE53_000404 0.27 +1.0 436,532 - ABIE53_000404 0.27 +1.9 436,532 - ABIE53_000404 0.27 +1.9 436,532 - ABIE53_000404 0.27 +1.2 436,532 - ABIE53_000404 0.27 +1.3 436,532 - ABIE53_000404 0.27 +1.3 436,532 - ABIE53_000404 0.27 +1.4 436,532 - ABIE53_000404 0.27 +0.9 436,532 - ABIE53_000404 0.27 +1.1 436,532 - ABIE53_000404 0.27 +1.8 436,532 - ABIE53_000404 0.27 +1.7 437,508 - +0.6 437,508 - +0.5 437,514 - -0.1
Or see this region's nucleotide sequence