Experiment: R2A with Ethanol 2.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000064 and ABIE53_000065 are separated by 181 nucleotides ABIE53_000065 and ABIE53_000066 are separated by 262 nucleotides
ABIE53_000064: ABIE53_000064 - glycosyltransferase involved in cell wall biosynthesis, at 72,721 to 73,548
_000064
ABIE53_000065: ABIE53_000065 - DNA-binding transcriptional LysR family regulator, at 73,730 to 74,680
_000065
ABIE53_000066: ABIE53_000066 - outer membrane protein OmpA-like peptidoglycan-associated protein, at 74,943 to 76,829
_000066
Position (kb) 73
74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 72.911 kb on + strand, within ABIE53_000064 at 72.911 kb on + strand, within ABIE53_000064 at 72.911 kb on + strand, within ABIE53_000064 at 72.912 kb on - strand, within ABIE53_000064 at 72.938 kb on + strand, within ABIE53_000064 at 72.939 kb on - strand, within ABIE53_000064 at 72.939 kb on - strand, within ABIE53_000064 at 73.073 kb on + strand, within ABIE53_000064 at 73.073 kb on + strand, within ABIE53_000064 at 73.073 kb on + strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.074 kb on - strand, within ABIE53_000064 at 73.178 kb on + strand, within ABIE53_000064 at 73.178 kb on + strand, within ABIE53_000064 at 73.178 kb on + strand, within ABIE53_000064 at 73.179 kb on - strand, within ABIE53_000064 at 73.179 kb on - strand, within ABIE53_000064 at 73.214 kb on + strand, within ABIE53_000064 at 73.215 kb on - strand, within ABIE53_000064 at 73.259 kb on + strand, within ABIE53_000064 at 73.259 kb on + strand, within ABIE53_000064 at 73.259 kb on + strand, within ABIE53_000064 at 73.259 kb on + strand, within ABIE53_000064 at 73.259 kb on + strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.260 kb on - strand, within ABIE53_000064 at 73.388 kb on + strand, within ABIE53_000064 at 73.388 kb on + strand, within ABIE53_000064 at 73.388 kb on + strand, within ABIE53_000064 at 73.389 kb on - strand, within ABIE53_000064 at 73.389 kb on - strand, within ABIE53_000064 at 73.389 kb on - strand, within ABIE53_000064 at 73.474 kb on - strand at 73.474 kb on - strand at 73.508 kb on + strand at 73.508 kb on + strand at 73.508 kb on + strand at 73.508 kb on + strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.509 kb on - strand at 73.518 kb on + strand at 73.518 kb on + strand at 73.519 kb on - strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.530 kb on + strand at 73.531 kb on - strand at 73.531 kb on - strand at 73.531 kb on - strand at 73.531 kb on - strand at 73.590 kb on + strand at 73.590 kb on + strand at 73.590 kb on + strand at 73.590 kb on + strand at 73.590 kb on + strand at 73.591 kb on - strand at 73.591 kb on - strand at 73.591 kb on - strand at 73.619 kb on + strand at 73.619 kb on + strand at 73.619 kb on + strand at 73.619 kb on + strand at 73.620 kb on - strand at 73.620 kb on - strand at 73.620 kb on - strand at 73.620 kb on - strand at 73.620 kb on - strand at 73.622 kb on + strand at 73.622 kb on + strand at 73.623 kb on - strand at 73.623 kb on - strand at 73.672 kb on + strand at 73.672 kb on + strand at 73.672 kb on + strand at 73.673 kb on - strand at 73.673 kb on - strand at 73.673 kb on - strand at 73.673 kb on - strand at 73.673 kb on - strand at 73.686 kb on + strand at 73.686 kb on + strand at 73.686 kb on + strand at 73.686 kb on + strand at 73.686 kb on + strand at 73.687 kb on - strand at 73.687 kb on - strand at 73.687 kb on - strand at 73.687 kb on - strand at 73.709 kb on + strand at 73.751 kb on + strand at 73.751 kb on + strand at 73.751 kb on + strand at 73.751 kb on + strand at 73.752 kb on - strand at 73.922 kb on + strand, within ABIE53_000065 at 73.922 kb on + strand, within ABIE53_000065 at 73.922 kb on + strand, within ABIE53_000065 at 73.922 kb on + strand, within ABIE53_000065 at 73.922 kb on + strand, within ABIE53_000065 at 73.923 kb on - strand, within ABIE53_000065 at 73.923 kb on - strand, within ABIE53_000065 at 74.017 kb on + strand, within ABIE53_000065 at 74.017 kb on + strand, within ABIE53_000065 at 74.017 kb on + strand, within ABIE53_000065 at 74.017 kb on + strand, within ABIE53_000065 at 74.188 kb on + strand, within ABIE53_000065 at 74.306 kb on + strand, within ABIE53_000065 at 74.306 kb on + strand, within ABIE53_000065 at 74.306 kb on + strand, within ABIE53_000065 at 74.307 kb on - strand, within ABIE53_000065 at 74.340 kb on + strand, within ABIE53_000065 at 74.340 kb on + strand, within ABIE53_000065 at 74.340 kb on + strand, within ABIE53_000065 at 74.340 kb on + strand, within ABIE53_000065 at 74.374 kb on + strand, within ABIE53_000065 at 74.374 kb on + strand, within ABIE53_000065 at 74.456 kb on + strand, within ABIE53_000065 at 74.457 kb on - strand, within ABIE53_000065 at 74.457 kb on - strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.552 kb on + strand, within ABIE53_000065 at 74.553 kb on - strand, within ABIE53_000065 at 74.769 kb on + strand at 74.769 kb on + strand at 74.769 kb on + strand at 74.769 kb on + strand at 74.769 kb on + strand at 74.769 kb on + strand at 74.769 kb on + strand at 74.770 kb on - strand at 74.770 kb on - strand at 74.858 kb on + strand at 74.858 kb on + strand at 74.858 kb on + strand at 74.858 kb on + strand at 74.859 kb on - strand at 74.859 kb on - strand at 74.859 kb on - strand at 74.915 kb on + strand at 74.916 kb on - strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.944 kb on + strand at 74.945 kb on - strand at 74.945 kb on - strand at 74.945 kb on - strand at 74.945 kb on - strand at 74.966 kb on + strand at 74.966 kb on + strand at 74.967 kb on - strand at 74.990 kb on + strand at 75.028 kb on + strand at 75.028 kb on + strand at 75.076 kb on + strand at 75.077 kb on - strand at 75.077 kb on - strand at 75.077 kb on - strand at 75.148 kb on + strand, within ABIE53_000066 at 75.149 kb on - strand, within ABIE53_000066 at 75.230 kb on + strand, within ABIE53_000066 at 75.409 kb on + strand, within ABIE53_000066 at 75.409 kb on + strand, within ABIE53_000066 at 75.409 kb on + strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.410 kb on - strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.604 kb on + strand, within ABIE53_000066 at 75.605 kb on - strand, within ABIE53_000066 at 75.605 kb on - strand, within ABIE53_000066 at 75.605 kb on - strand, within ABIE53_000066 at 75.605 kb on - strand, within ABIE53_000066 at 75.605 kb on - strand, within ABIE53_000066
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Ethanol 2.5 vol% remove 72,911 + ABIE53_000064 0.23 -0.7 72,911 + ABIE53_000064 0.23 -0.8 72,911 + ABIE53_000064 0.23 +0.5 72,912 - ABIE53_000064 0.23 -0.4 72,938 + ABIE53_000064 0.26 +0.5 72,939 - ABIE53_000064 0.26 -0.6 72,939 - ABIE53_000064 0.26 -0.2 73,073 + ABIE53_000064 0.43 -1.1 73,073 + ABIE53_000064 0.43 +0.3 73,073 + ABIE53_000064 0.43 +0.1 73,074 - ABIE53_000064 0.43 -0.8 73,074 - ABIE53_000064 0.43 -0.3 73,074 - ABIE53_000064 0.43 +0.7 73,074 - ABIE53_000064 0.43 +0.5 73,074 - ABIE53_000064 0.43 -0.9 73,074 - ABIE53_000064 0.43 +0.3 73,178 + ABIE53_000064 0.55 -0.9 73,178 + ABIE53_000064 0.55 -2.1 73,178 + ABIE53_000064 0.55 -0.3 73,179 - ABIE53_000064 0.55 +0.3 73,179 - ABIE53_000064 0.55 +0.8 73,214 + ABIE53_000064 0.60 +0.5 73,215 - ABIE53_000064 0.60 -0.8 73,259 + ABIE53_000064 0.65 -0.7 73,259 + ABIE53_000064 0.65 -1.3 73,259 + ABIE53_000064 0.65 +0.2 73,259 + ABIE53_000064 0.65 -1.9 73,259 + ABIE53_000064 0.65 +1.0 73,260 - ABIE53_000064 0.65 -1.0 73,260 - ABIE53_000064 0.65 +0.4 73,260 - ABIE53_000064 0.65 -0.3 73,260 - ABIE53_000064 0.65 -0.9 73,260 - ABIE53_000064 0.65 -0.1 73,260 - ABIE53_000064 0.65 +0.7 73,260 - ABIE53_000064 0.65 -0.7 73,388 + ABIE53_000064 0.81 -0.3 73,388 + ABIE53_000064 0.81 -0.3 73,388 + ABIE53_000064 0.81 +0.4 73,389 - ABIE53_000064 0.81 -0.0 73,389 - ABIE53_000064 0.81 -0.7 73,389 - ABIE53_000064 0.81 +0.5 73,474 - -0.4 73,474 - -0.4 73,508 + -1.4 73,508 + -0.5 73,508 + -1.2 73,508 + -1.7 73,509 - +0.6 73,509 - -0.4 73,509 - -0.6 73,509 - -0.4 73,509 - -0.0 73,509 - -0.0 73,509 - -1.2 73,518 + -0.9 73,518 + -1.6 73,519 - -0.8 73,530 + -1.3 73,530 + -0.2 73,530 + -0.7 73,530 + +0.7 73,530 + -0.5 73,530 + -0.4 73,530 + -1.2 73,531 - -1.5 73,531 - -0.8 73,531 - +0.3 73,531 - -1.0 73,590 + -0.3 73,590 + -1.8 73,590 + -0.7 73,590 + +0.1 73,590 + -1.2 73,591 - -0.0 73,591 - -0.0 73,591 - +0.4 73,619 + +0.1 73,619 + -0.1 73,619 + -1.0 73,619 + +0.1 73,620 - -1.4 73,620 - +0.8 73,620 - +2.6 73,620 - +0.3 73,620 - +0.3 73,622 + -0.9 73,622 + -0.0 73,623 - -0.2 73,623 - +0.3 73,672 + +0.6 73,672 + -0.6 73,672 + -0.1 73,673 - +2.0 73,673 - +0.4 73,673 - -0.5 73,673 - -0.4 73,673 - +2.6 73,686 + -0.5 73,686 + -1.6 73,686 + +0.8 73,686 + +0.1 73,686 + -2.6 73,687 - -0.5 73,687 - -0.9 73,687 - -0.4 73,687 - -2.1 73,709 + +0.6 73,751 + -0.6 73,751 + -0.2 73,751 + -0.7 73,751 + +0.6 73,752 - -0.4 73,922 + ABIE53_000065 0.20 -0.0 73,922 + ABIE53_000065 0.20 -0.4 73,922 + ABIE53_000065 0.20 -0.5 73,922 + ABIE53_000065 0.20 -0.9 73,922 + ABIE53_000065 0.20 +0.4 73,923 - ABIE53_000065 0.20 -1.6 73,923 - ABIE53_000065 0.20 -0.2 74,017 + ABIE53_000065 0.30 +1.3 74,017 + ABIE53_000065 0.30 +0.2 74,017 + ABIE53_000065 0.30 -0.8 74,017 + ABIE53_000065 0.30 +0.1 74,188 + ABIE53_000065 0.48 +3.6 74,306 + ABIE53_000065 0.61 -0.3 74,306 + ABIE53_000065 0.61 -0.7 74,306 + ABIE53_000065 0.61 -0.2 74,307 - ABIE53_000065 0.61 +1.2 74,340 + ABIE53_000065 0.64 +1.5 74,340 + ABIE53_000065 0.64 +0.0 74,340 + ABIE53_000065 0.64 -2.5 74,340 + ABIE53_000065 0.64 +0.9 74,374 + ABIE53_000065 0.68 -0.5 74,374 + ABIE53_000065 0.68 -0.3 74,456 + ABIE53_000065 0.76 -0.2 74,457 - ABIE53_000065 0.76 +0.6 74,457 - ABIE53_000065 0.76 -0.4 74,552 + ABIE53_000065 0.86 +0.6 74,552 + ABIE53_000065 0.86 +1.9 74,552 + ABIE53_000065 0.86 +0.2 74,552 + ABIE53_000065 0.86 -0.3 74,552 + ABIE53_000065 0.86 +0.5 74,552 + ABIE53_000065 0.86 -0.1 74,553 - ABIE53_000065 0.87 -0.1 74,769 + -2.7 74,769 + +0.4 74,769 + -0.5 74,769 + -0.5 74,769 + -0.5 74,769 + -1.0 74,769 + +1.3 74,770 - -2.1 74,770 - +0.5 74,858 + -0.4 74,858 + -0.7 74,858 + +0.8 74,858 + -2.0 74,859 - -1.0 74,859 - -2.1 74,859 - +0.1 74,915 + -1.4 74,916 - -0.7 74,944 + -2.0 74,944 + -0.2 74,944 + -1.4 74,944 + -0.7 74,944 + +0.9 74,944 + -0.7 74,944 + -0.6 74,945 - -1.9 74,945 - +0.5 74,945 - -0.8 74,945 - +0.2 74,966 + -1.6 74,966 + -1.1 74,967 - -1.1 74,990 + -0.5 75,028 + +0.7 75,028 + -0.5 75,076 + -0.6 75,077 - +0.3 75,077 - -0.5 75,077 - -0.4 75,148 + ABIE53_000066 0.11 +0.4 75,149 - ABIE53_000066 0.11 +0.0 75,230 + ABIE53_000066 0.15 +2.0 75,409 + ABIE53_000066 0.25 +0.5 75,409 + ABIE53_000066 0.25 +0.8 75,409 + ABIE53_000066 0.25 -0.5 75,410 - ABIE53_000066 0.25 +1.8 75,410 - ABIE53_000066 0.25 -0.1 75,410 - ABIE53_000066 0.25 -0.6 75,410 - ABIE53_000066 0.25 -0.7 75,410 - ABIE53_000066 0.25 +0.4 75,410 - ABIE53_000066 0.25 -0.7 75,410 - ABIE53_000066 0.25 -0.5 75,410 - ABIE53_000066 0.25 +0.0 75,410 - ABIE53_000066 0.25 -1.5 75,410 - ABIE53_000066 0.25 -0.1 75,604 + ABIE53_000066 0.35 -2.0 75,604 + ABIE53_000066 0.35 -0.5 75,604 + ABIE53_000066 0.35 +0.7 75,604 + ABIE53_000066 0.35 -0.7 75,604 + ABIE53_000066 0.35 +0.3 75,604 + ABIE53_000066 0.35 -2.2 75,605 - ABIE53_000066 0.35 -0.5 75,605 - ABIE53_000066 0.35 -0.6 75,605 - ABIE53_000066 0.35 -3.3 75,605 - ABIE53_000066 0.35 -0.5 75,605 - ABIE53_000066 0.35 -0.6
Or see this region's nucleotide sequence