Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003310

Experiment: M9 with 3-methyl-2-butenol 2 g/L

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with 3-methyl-2-butenol 2 g/L
3,730,140	+				-1.6
3,730,140	+				-0.4
3,730,140	+				-0.4
3,730,140	+				+1.3
3,730,141	-				-2.1
3,730,141	-				+0.6
3,730,141	-				+3.9
3,730,141	-				+0.7
3,730,178	-		ABIE53_003309	0.13	-1.4
3,730,178	-		ABIE53_003309	0.13	-1.5
3,730,228	-		ABIE53_003309	0.19	-0.5
3,730,228	-		ABIE53_003309	0.19	-0.2
3,730,228	-		ABIE53_003309	0.19	-0.1
3,730,228	-		ABIE53_003309	0.19	+3.2
3,730,228	-		ABIE53_003309	0.19	+0.2
3,730,228	-		ABIE53_003309	0.19	-2.3
3,730,242	+		ABIE53_003309	0.20	+0.1
3,730,242	+		ABIE53_003309	0.20	+0.0
3,730,243	-		ABIE53_003309	0.21	-0.9
3,730,243	-		ABIE53_003309	0.21	-0.4
3,730,284	+		ABIE53_003309	0.26	-0.6
3,730,284	+		ABIE53_003309	0.26	+1.5
3,730,359	+		ABIE53_003309	0.35	+0.3
3,730,482	+		ABIE53_003309	0.50	+1.5
3,730,483	-		ABIE53_003309	0.50	+1.6
3,730,483	-		ABIE53_003309	0.50	+1.3
3,730,491	+		ABIE53_003309	0.51	-1.0
3,730,491	+		ABIE53_003309	0.51	+0.4
3,730,491	+		ABIE53_003309	0.51	-0.4
3,730,491	+		ABIE53_003309	0.51	+0.7
3,730,491	+		ABIE53_003309	0.51	-0.3
3,730,492	-		ABIE53_003309	0.51	-0.2
3,730,492	-		ABIE53_003309	0.51	+0.8
3,730,579	-		ABIE53_003309	0.62	-0.6
3,730,672	+		ABIE53_003309	0.74	+1.6
3,730,672	+		ABIE53_003309	0.74	-1.8
3,730,672	+		ABIE53_003309	0.74	+1.3
3,730,672	+		ABIE53_003309	0.74	+0.1
3,730,672	+		ABIE53_003309	0.74	-0.6
3,730,673	-		ABIE53_003309	0.74	+0.2
3,730,673	-		ABIE53_003309	0.74	-0.8
3,730,673	-		ABIE53_003309	0.74	+0.2
3,730,673	-		ABIE53_003309	0.74	+1.7
3,730,708	+		ABIE53_003309	0.78	-0.3
3,730,708	+		ABIE53_003309	0.78	+0.3
3,730,708	+		ABIE53_003309	0.78	+1.1
3,730,708	+		ABIE53_003309	0.78	+0.8
3,730,708	+		ABIE53_003309	0.78	+0.5
3,730,708	+		ABIE53_003309	0.78	-2.0
3,730,708	+		ABIE53_003309	0.78	-0.2
3,730,708	+		ABIE53_003309	0.78	+0.9
3,730,708	+		ABIE53_003309	0.78	-0.2
3,730,709	-		ABIE53_003309	0.78	+0.6
3,730,709	-		ABIE53_003309	0.78	-1.4
3,730,709	-		ABIE53_003309	0.78	-1.0
3,730,709	-		ABIE53_003309	0.78	+0.0
3,730,709	-		ABIE53_003309	0.78	-0.1
3,730,709	-		ABIE53_003309	0.78	-0.6
3,730,788	+		ABIE53_003309	0.88	+0.7
3,730,788	+		ABIE53_003309	0.88	+0.4
3,730,788	+		ABIE53_003309	0.88	-0.3
3,730,788	+		ABIE53_003309	0.88	-1.4
3,730,789	-		ABIE53_003309	0.88	-1.1
3,730,789	-		ABIE53_003309	0.88	-0.7
3,730,813	-				+1.3
3,730,823	-				-0.2
3,730,836	+				-1.0
3,730,836	+				+0.1
3,730,836	+				+2.8
3,730,836	+				-1.2
3,730,854	+				-0.2
3,730,854	+				-0.3
3,730,854	+				-0.1
3,730,854	+				-0.5
3,730,854	+				-0.3
3,730,855	-				+0.0
3,730,855	-				-0.0
3,730,898	-				+0.5
3,730,898	-				-0.4
3,730,939	+				-0.7
3,730,939	+				+0.7
3,730,939	+				-2.7
3,730,944	+				-0.3
3,730,944	+				-1.0
3,730,945	-				+0.2
3,730,945	-				-0.2
3,730,974	-				-0.7
3,731,016	-				-0.2
3,731,058	+				+0.9
3,731,058	+				-1.1
3,731,058	+				+0.3
3,731,058	+				-1.2
3,731,058	+				-0.1
3,731,059	-				+1.9
3,731,059	-				-0.8
3,731,113	+				-0.5
3,731,113	+				-0.2
3,731,113	+				+0.2
3,731,113	+				+0.2
3,731,113	+				-1.9
3,731,113	+				-1.0
3,731,113	+				-0.5
3,731,113	+				-0.6
3,731,113	+				-0.4
3,731,113	+				+1.4
3,731,113	+				+1.2
3,731,114	-				+0.2
3,731,114	-				-0.4
3,731,114	-				+0.1
3,731,114	-				+0.4
3,731,114	-				+1.4
3,731,114	-				+0.2
3,731,114	-				+2.1
3,731,114	-				+1.9
3,731,114	-				-0.5
3,731,114	-				-0.0
3,731,114	-				+1.1
3,731,114	-				-0.5
3,731,114	-				+1.4
3,731,114	-				-1.1
3,731,114	-				+0.6
3,731,114	-				+0.6
3,731,114	-				-0.3
3,731,114	-				-0.4
3,731,114	-				-0.3
3,731,114	-				-0.1
3,731,126	-				-0.1
3,731,126	-				+2.3
3,731,136	+				+0.9
3,731,136	+				-0.1
3,731,136	+				+0.1
3,731,136	+				-0.8
3,731,136	+				-0.2
3,731,136	+				+0.9
3,731,136	+				-0.7
3,731,136	+				-0.9
3,731,137	-				-0.5
3,731,137	-				-0.1
3,731,374	+		ABIE53_003310	0.35	+1.1
3,731,375	-		ABIE53_003310	0.35	+0.7
3,731,434	+		ABIE53_003310	0.43	+1.6
3,731,434	+		ABIE53_003310	0.43	+0.7
3,731,434	+		ABIE53_003310	0.43	-1.3
3,731,434	+		ABIE53_003310	0.43	+0.2
3,731,434	+		ABIE53_003310	0.43	+2.2
3,731,434	+		ABIE53_003310	0.43	+1.2
3,731,434	+		ABIE53_003310	0.43	+0.2
3,731,434	+		ABIE53_003310	0.43	+1.0
3,731,434	+		ABIE53_003310	0.43	-0.3
3,731,434	+		ABIE53_003310	0.43	+1.3
3,731,434	+		ABIE53_003310	0.43	+1.1
3,731,434	+		ABIE53_003310	0.43	+0.7
3,731,434	+		ABIE53_003310	0.43	+1.2
3,731,434	+		ABIE53_003310	0.43	+0.4
3,731,434	+		ABIE53_003310	0.43	+0.6
3,731,434	+		ABIE53_003310	0.43	+0.9
3,731,435	-		ABIE53_003310	0.43	+0.4
3,731,435	-		ABIE53_003310	0.43	-0.1
3,731,435	-		ABIE53_003310	0.43	-0.1
3,731,435	-		ABIE53_003310	0.43	+0.4
3,731,435	-		ABIE53_003310	0.43	+0.9
3,731,435	-		ABIE53_003310	0.43	+2.0
3,731,435	-		ABIE53_003310	0.43	+1.1
3,731,435	-		ABIE53_003310	0.43	-0.5
3,731,435	-		ABIE53_003310	0.43	+0.3
3,731,435	-		ABIE53_003310	0.43	-0.3
3,731,437	+		ABIE53_003310	0.43	+2.2
3,731,437	+		ABIE53_003310	0.43	+1.0
3,731,437	+		ABIE53_003310	0.43	-0.1
3,731,438	-		ABIE53_003310	0.43	+0.2
3,731,438	-		ABIE53_003310	0.43	-0.5
3,731,439	+		ABIE53_003310	0.44	+1.3
3,731,439	+		ABIE53_003310	0.44	+0.9
3,731,439	+		ABIE53_003310	0.44	+1.0
3,731,439	+		ABIE53_003310	0.44	+1.5
3,731,439	+		ABIE53_003310	0.44	+0.3
3,731,439	+		ABIE53_003310	0.44	+0.4
3,731,439	+		ABIE53_003310	0.44	+1.1
3,731,439	+		ABIE53_003310	0.44	+1.1
3,731,439	+		ABIE53_003310	0.44	+2.4
3,731,440	-		ABIE53_003310	0.44	+1.4
3,731,440	-		ABIE53_003310	0.44	+2.1
3,731,440	-		ABIE53_003310	0.44	+0.2
3,731,440	-		ABIE53_003310	0.44	-1.2
3,731,440	-		ABIE53_003310	0.44	-0.1
3,731,440	-		ABIE53_003310	0.44	-0.7
3,731,440	-		ABIE53_003310	0.44	+1.9
3,731,440	-		ABIE53_003310	0.44	+0.2
3,731,440	-		ABIE53_003310	0.44	-0.1
3,731,440	-		ABIE53_003310	0.44	-0.2
3,731,440	-		ABIE53_003310	0.44	-0.2
3,731,440	-		ABIE53_003310	0.44	+0.0
3,731,440	-		ABIE53_003310	0.44	+1.0
3,731,440	-		ABIE53_003310	0.44	-0.1
3,731,452	+		ABIE53_003310	0.45	-0.8
3,731,453	-		ABIE53_003310	0.45	+0.5
3,731,453	-		ABIE53_003310	0.45	+0.2
3,731,474	+		ABIE53_003310	0.48	+1.2
3,731,474	+		ABIE53_003310	0.48	+2.0
3,731,475	-		ABIE53_003310	0.48	-0.7
3,731,546	+		ABIE53_003310	0.58	+5.1
3,731,546	+		ABIE53_003310	0.58	+1.2
3,731,546	+		ABIE53_003310	0.58	+1.1
3,731,546	+		ABIE53_003310	0.58	+1.6
3,731,547	-		ABIE53_003310	0.58	+0.2
3,731,547	-		ABIE53_003310	0.58	+0.0
3,731,547	-		ABIE53_003310	0.58	-0.7
3,731,547	-		ABIE53_003310	0.58	+2.4
3,731,613	+		ABIE53_003310	0.67	+0.3
3,731,614	-		ABIE53_003310	0.67	+0.3
3,731,614	-		ABIE53_003310	0.67	-0.8
3,731,614	-		ABIE53_003310	0.67	+1.4
3,731,614	-		ABIE53_003310	0.67	-1.3
3,731,614	-		ABIE53_003310	0.67	+0.6
3,731,614	-		ABIE53_003310	0.67	-0.9
3,731,614	-		ABIE53_003310	0.67	-0.1
3,731,614	-		ABIE53_003310	0.67	+0.4
3,731,678	-		ABIE53_003310	0.75	+0.2
3,731,684	+		ABIE53_003310	0.76	-0.5
3,731,684	+		ABIE53_003310	0.76	-0.1
3,731,684	+		ABIE53_003310	0.76	-1.0
3,731,685	-		ABIE53_003310	0.76	-1.9
3,731,685	-		ABIE53_003310	0.76	+1.0
3,731,685	-		ABIE53_003310	0.76	-0.8
3,731,685	-		ABIE53_003310	0.76	+0.1
3,731,685	-		ABIE53_003310	0.76	+0.6
3,731,701	+		ABIE53_003310	0.79	+1.3
3,731,702	-		ABIE53_003310	0.79	-0.6
3,731,702	-		ABIE53_003310	0.79	-1.2
3,731,702	-		ABIE53_003310	0.79	-1.6
3,731,702	-		ABIE53_003310	0.79	+0.2
3,731,702	-		ABIE53_003310	0.79	+0.8
3,731,702	-		ABIE53_003310	0.79	+0.4
3,731,846	+				+1.5
3,731,847	-				-0.1
3,731,847	-				-0.4
3,731,847	-				-0.6
3,731,871	-				-2.7
3,731,871	-				-0.3
3,731,879	-				-0.8
3,732,111	+		ABIE53_003311	0.37	+0.3
3,732,127	+		ABIE53_003311	0.39	-0.4
3,732,127	+		ABIE53_003311	0.39	+0.9
3,732,127	+		ABIE53_003311	0.39	+0.0
3,732,128	-		ABIE53_003311	0.39	-0.2
3,732,128	-		ABIE53_003311	0.39	+0.7
3,732,141	+		ABIE53_003311	0.41	+0.8
3,732,141	+		ABIE53_003311	0.41	-1.1
3,732,142	-		ABIE53_003311	0.42	-1.1
3,732,142	-		ABIE53_003311	0.42	+0.5
3,732,142	-		ABIE53_003311	0.42	-0.3
3,732,142	-		ABIE53_003311	0.42	+0.3
3,732,142	-		ABIE53_003311	0.42	+0.4
3,732,186	+		ABIE53_003311	0.48	-0.0
3,732,186	+		ABIE53_003311	0.48	-0.4
3,732,186	+		ABIE53_003311	0.48	+1.9
3,732,186	+		ABIE53_003311	0.48	+0.6
3,732,187	-		ABIE53_003311	0.48	+0.3
3,732,187	-		ABIE53_003311	0.48	-2.0
3,732,187	-		ABIE53_003311	0.48	-0.3
3,732,233	+		ABIE53_003311	0.55	-0.2
3,732,234	-		ABIE53_003311	0.55	+0.8
3,732,273	+		ABIE53_003311	0.61	+0.0
3,732,273	+		ABIE53_003311	0.61	+0.7
3,732,273	+		ABIE53_003311	0.61	+1.5
3,732,273	+		ABIE53_003311	0.61	+0.5
3,732,274	-		ABIE53_003311	0.61	+0.5
3,732,274	-		ABIE53_003311	0.61	-0.4
3,732,274	-		ABIE53_003311	0.61	-1.1
3,732,274	-		ABIE53_003311	0.61	+0.0
3,732,337	-		ABIE53_003311	0.71	+0.5
3,732,337	-		ABIE53_003311	0.71	-0.2
3,732,389	+		ABIE53_003311	0.79	+0.6
3,732,389	+		ABIE53_003311	0.79	-0.1
3,732,389	+		ABIE53_003311	0.79	+0.0
3,732,389	+		ABIE53_003311	0.79	-0.4
3,732,390	-		ABIE53_003311	0.79	-0.4
3,732,390	-		ABIE53_003311	0.79	-0.3
3,732,390	-		ABIE53_003311	0.79	-0.8
3,732,390	-		ABIE53_003311	0.79	-2.0
3,732,390	-		ABIE53_003311	0.79	-0.7
3,732,390	-		ABIE53_003311	0.79	-0.7
3,732,579	+				+0.3
3,732,579	+				-0.7
3,732,579	+				+0.9
3,732,580	-				-0.4
3,732,605	+				-0.2
3,732,605	+				+0.5
3,732,606	-				-0.3
3,732,606	-				-0.6
3,732,606	-				-0.4
3,732,653	+		ABIE53_003312	0.12	+1.4
3,732,653	+		ABIE53_003312	0.12	-0.2
3,732,654	-		ABIE53_003312	0.12	-2.0
3,732,674	+		ABIE53_003312	0.16	-0.5
3,732,674	+		ABIE53_003312	0.16	-0.1
3,732,674	+		ABIE53_003312	0.16	+1.0
3,732,674	+		ABIE53_003312	0.16	+2.1
3,732,674	+		ABIE53_003312	0.16	-0.1
3,732,675	-		ABIE53_003312	0.16	+0.5
3,732,675	-		ABIE53_003312	0.16	+0.7
3,732,675	-		ABIE53_003312	0.16	-2.3
3,732,803	+		ABIE53_003312	0.43	-1.7
3,732,803	+		ABIE53_003312	0.43	-0.8
3,732,803	+		ABIE53_003312	0.43	+0.8
3,732,803	+		ABIE53_003312	0.43	+0.5
3,732,803	+		ABIE53_003312	0.43	+2.0
3,732,804	-		ABIE53_003312	0.43	+1.4
3,732,804	-		ABIE53_003312	0.43	-0.0
3,732,804	-		ABIE53_003312	0.43	-0.3
3,732,804	-		ABIE53_003312	0.43	+1.7
3,732,804	-		ABIE53_003312	0.43	-0.1
3,732,804	-		ABIE53_003312	0.43	-0.1
3,732,804	-		ABIE53_003312	0.43	+0.5