Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002809

Experiment: M9 with 3-methyl-2-butenol 2 g/L

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with 3-methyl-2-butenol 2 g/L
3,166,650	+				-0.7
3,166,651	-				-0.8
3,166,654	-				+0.3
3,166,746	+				+1.1
3,166,777	+				+1.9
3,166,777	+				-0.3
3,166,778	-				-0.5
3,166,847	+		ABIE53_002808	0.17	+1.0
3,166,847	+		ABIE53_002808	0.17	+1.8
3,166,847	+		ABIE53_002808	0.17	+0.4
3,166,847	+		ABIE53_002808	0.17	+0.3
3,166,847	+		ABIE53_002808	0.17	-0.8
3,166,847	+		ABIE53_002808	0.17	+0.2
3,166,848	-		ABIE53_002808	0.17	+0.0
3,166,848	-		ABIE53_002808	0.17	-0.0
3,166,848	-		ABIE53_002808	0.17	+0.3
3,166,940	-		ABIE53_002808	0.28	-1.0
3,167,012	+		ABIE53_002808	0.37	-0.1
3,167,013	-		ABIE53_002808	0.37	+0.1
3,167,075	+		ABIE53_002808	0.44	+0.5
3,167,075	+		ABIE53_002808	0.44	-0.0
3,167,075	+		ABIE53_002808	0.44	-0.1
3,167,076	-		ABIE53_002808	0.44	-0.5
3,167,076	-		ABIE53_002808	0.44	+0.6
3,167,076	-		ABIE53_002808	0.44	+0.3
3,167,076	-		ABIE53_002808	0.44	+0.4
3,167,076	-		ABIE53_002808	0.44	+0.4
3,167,111	+		ABIE53_002808	0.49	-1.3
3,167,111	+		ABIE53_002808	0.49	+0.1
3,167,111	+		ABIE53_002808	0.49	+0.2
3,167,112	-		ABIE53_002808	0.49	-1.6
3,167,144	+		ABIE53_002808	0.53	+0.1
3,167,144	+		ABIE53_002808	0.53	+0.2
3,167,144	+		ABIE53_002808	0.53	-0.5
3,167,144	+		ABIE53_002808	0.53	+0.1
3,167,144	+		ABIE53_002808	0.53	-0.2
3,167,144	+		ABIE53_002808	0.53	-1.3
3,167,144	+		ABIE53_002808	0.53	-1.1
3,167,145	-		ABIE53_002808	0.53	+2.0
3,167,145	-		ABIE53_002808	0.53	-0.5
3,167,145	-		ABIE53_002808	0.53	+1.2
3,167,145	-		ABIE53_002808	0.53	-1.0
3,167,154	+		ABIE53_002808	0.54	+0.1
3,167,155	-		ABIE53_002808	0.54	+0.3
3,167,216	+		ABIE53_002808	0.61	+1.1
3,167,216	+		ABIE53_002808	0.61	-0.5
3,167,216	+		ABIE53_002808	0.61	-0.2
3,167,217	-		ABIE53_002808	0.61	-1.4
3,167,217	-		ABIE53_002808	0.61	-0.8
3,167,370	+		ABIE53_002808	0.80	+0.7
3,167,414	+		ABIE53_002808	0.85	+0.1
3,167,414	+		ABIE53_002808	0.85	-0.4
3,167,414	+		ABIE53_002808	0.85	-0.5
3,167,414	+		ABIE53_002808	0.85	+0.8
3,167,415	-		ABIE53_002808	0.85	-0.0
3,167,415	-		ABIE53_002808	0.85	-0.3
3,167,415	-		ABIE53_002808	0.85	-0.4
3,167,551	+				-0.6
3,167,551	+				-0.1
3,167,551	+				+1.7
3,167,552	-				-0.8
3,167,570	+				+0.7
3,167,570	+				+0.1
3,167,571	-				-1.3
3,167,571	-				-0.4
3,167,571	-				+0.6
3,167,642	+				-0.2
3,167,642	+				+1.2
3,167,642	+				+0.6
3,167,642	+				+0.2
3,167,642	+				+0.3
3,167,642	+				+0.3
3,167,642	+				+0.2
3,167,642	+				+0.2
3,167,642	+				-0.2
3,167,642	+				-0.4
3,167,642	+				-0.8
3,167,642	+				-0.4
3,167,643	-				+0.1
3,167,643	-				-0.3
3,167,643	-				-0.1
3,167,643	-				+1.0
3,167,643	-				-0.4
3,167,643	-				+1.4
3,167,646	-				-0.2
3,167,646	-				-0.1
3,167,646	-				-1.1
3,167,684	+		ABIE53_002809	0.14	-0.3
3,167,684	+		ABIE53_002809	0.14	-1.1
3,167,685	-		ABIE53_002809	0.14	+0.3
3,167,685	-		ABIE53_002809	0.14	+0.4
3,167,685	-		ABIE53_002809	0.14	-0.4
3,167,870	+		ABIE53_002809	0.36	-0.7
3,167,870	+		ABIE53_002809	0.36	-1.0
3,167,870	+		ABIE53_002809	0.36	-0.1
3,167,870	+		ABIE53_002809	0.36	+0.3
3,167,870	+		ABIE53_002809	0.36	+0.6
3,167,870	+		ABIE53_002809	0.36	-0.7
3,167,870	+		ABIE53_002809	0.36	-0.5
3,167,871	-		ABIE53_002809	0.37	-0.9
3,167,871	-		ABIE53_002809	0.37	+0.6
3,167,871	-		ABIE53_002809	0.37	-0.1
3,167,871	-		ABIE53_002809	0.37	+0.3
3,167,871	-		ABIE53_002809	0.37	+1.2
3,167,871	-		ABIE53_002809	0.37	-1.1
3,167,871	-		ABIE53_002809	0.37	-0.5
3,167,871	-		ABIE53_002809	0.37	-0.5
3,167,871	-		ABIE53_002809	0.37	-0.7
3,167,871	-		ABIE53_002809	0.37	-1.1
3,167,885	+		ABIE53_002809	0.38	-1.8
3,167,885	+		ABIE53_002809	0.38	+0.7
3,167,977	+		ABIE53_002809	0.49	+0.9
3,167,977	+		ABIE53_002809	0.49	-0.6
3,167,977	+		ABIE53_002809	0.49	-0.3
3,167,977	+		ABIE53_002809	0.49	+0.6
3,167,977	+		ABIE53_002809	0.49	-0.9
3,167,977	+		ABIE53_002809	0.49	-0.2
3,167,977	+		ABIE53_002809	0.49	-0.1
3,167,977	+		ABIE53_002809	0.49	-0.1
3,167,977	+		ABIE53_002809	0.49	-1.0
3,167,978	-		ABIE53_002809	0.49	-2.8
3,167,978	-		ABIE53_002809	0.49	-1.0
3,167,978	-		ABIE53_002809	0.49	-0.7
3,167,978	-		ABIE53_002809	0.49	-0.6
3,167,978	-		ABIE53_002809	0.49	-0.1
3,167,978	-		ABIE53_002809	0.49	+0.3
3,167,978	-		ABIE53_002809	0.49	+0.2
3,168,014	+		ABIE53_002809	0.54	+0.8
3,168,112	+		ABIE53_002809	0.65	+0.9
3,168,113	-		ABIE53_002809	0.66	+1.1
3,168,113	-		ABIE53_002809	0.66	-0.8
3,168,113	-		ABIE53_002809	0.66	-1.5
3,168,113	-		ABIE53_002809	0.66	-0.8
3,168,113	-		ABIE53_002809	0.66	-1.0
3,168,209	+		ABIE53_002809	0.77	-0.8
3,168,209	+		ABIE53_002809	0.77	+0.4
3,168,209	+		ABIE53_002809	0.77	+0.8
3,168,210	-		ABIE53_002809	0.77	-0.9
3,168,210	-		ABIE53_002809	0.77	-0.7
3,168,276	+		ABIE53_002809	0.85	-0.5
3,168,276	+		ABIE53_002809	0.85	-2.3
3,168,277	-		ABIE53_002809	0.85	-0.1
3,168,277	-		ABIE53_002809	0.85	+0.4
3,168,277	-		ABIE53_002809	0.85	-0.7
3,168,277	-		ABIE53_002809	0.85	-0.3
3,168,461	+				+1.2
3,168,462	-				+0.2
3,168,462	-				+1.2
3,168,489	+				-1.0
3,168,489	+				+0.5
3,168,489	+				+0.3
3,168,489	+				+1.0
3,168,490	-				+0.4
3,168,490	-				+1.7
3,168,804	-		ABIE53_002810	0.25	+1.5
3,168,804	-		ABIE53_002810	0.25	+1.5
3,168,903	+		ABIE53_002810	0.36	+2.3
3,169,127	+		ABIE53_002810	0.60	+1.7
3,169,127	+		ABIE53_002810	0.60	+3.0
3,169,127	+		ABIE53_002810	0.60	+0.1
3,169,128	-		ABIE53_002810	0.61	+1.4
3,169,128	-		ABIE53_002810	0.61	+0.1
3,169,128	-		ABIE53_002810	0.61	+0.6
3,169,160	+		ABIE53_002810	0.64	+0.8
3,169,160	+		ABIE53_002810	0.64	-0.2
3,169,160	+		ABIE53_002810	0.64	+2.8
3,169,160	+		ABIE53_002810	0.64	+2.8
3,169,161	-		ABIE53_002810	0.64	+2.0
3,169,161	-		ABIE53_002810	0.64	-0.2
3,169,161	-		ABIE53_002810	0.64	+1.3
3,169,161	-		ABIE53_002810	0.64	+1.1
3,169,161	-		ABIE53_002810	0.64	+0.8
3,169,161	-		ABIE53_002810	0.64	+0.6
3,169,161	-		ABIE53_002810	0.64	+1.1
3,169,161	-		ABIE53_002810	0.64	+0.6
3,169,161	-		ABIE53_002810	0.64	+2.0
3,169,161	-		ABIE53_002810	0.64	+0.9
3,169,233	+		ABIE53_002810	0.72	+1.4
3,169,233	+		ABIE53_002810	0.72	+2.8
3,169,233	+		ABIE53_002810	0.72	+2.0
3,169,233	+		ABIE53_002810	0.72	+2.2
3,169,233	+		ABIE53_002810	0.72	+1.3
3,169,233	+		ABIE53_002810	0.72	+1.2
3,169,233	+		ABIE53_002810	0.72	+1.1
3,169,234	-		ABIE53_002810	0.72	+1.2
3,169,234	-		ABIE53_002810	0.72	+1.8
3,169,234	-		ABIE53_002810	0.72	+2.4
3,169,234	-		ABIE53_002810	0.72	+0.9
3,169,234	-		ABIE53_002810	0.72	+0.9
3,169,234	-		ABIE53_002810	0.72	+0.8
3,169,234	-		ABIE53_002810	0.72	+0.4
3,169,234	-		ABIE53_002810	0.72	+0.4
3,169,234	-		ABIE53_002810	0.72	+1.3
3,169,234	-		ABIE53_002810	0.72	+0.4
3,169,234	-		ABIE53_002810	0.72	+0.3
3,169,234	-		ABIE53_002810	0.72	+0.5
3,169,234	-		ABIE53_002810	0.72	+0.6
3,169,234	-		ABIE53_002810	0.72	+0.1
3,169,234	-		ABIE53_002810	0.72	+1.0
3,169,234	-		ABIE53_002810	0.72	+0.5
3,169,234	-		ABIE53_002810	0.72	+0.6
3,169,234	-		ABIE53_002810	0.72	+1.0
3,169,328	+		ABIE53_002810	0.83	+2.7
3,169,328	+		ABIE53_002810	0.83	+1.7
3,169,329	-		ABIE53_002810	0.83	+2.3
3,169,329	-		ABIE53_002810	0.83	+1.1
3,169,329	-		ABIE53_002810	0.83	-0.2