Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_000416

Experiment: M9 with 3-methyl-3-butenol 4.5 g/L

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE53_000414 and ABIE53_000415 are separated by 307 nucleotidesABIE53_000415 and ABIE53_000416 overlap by 34 nucleotidesABIE53_000416 and ABIE53_000417 are separated by 103 nucleotides ABIE53_000414: ABIE53_000414 - homoserine O-acetyltransferase, at 447,700 to 448,845 _000414 ABIE53_000415: ABIE53_000415 - TetR/AcrR family transcriptional regulator, at 449,153 to 449,827 _000415 ABIE53_000416: ABIE53_000416 - pyrimidine 5'-nucleotidase, at 449,794 to 450,597 _000416 ABIE53_000417: ABIE53_000417 - acetylglutamate kinase, at 450,701 to 451,600 _000417 Position (kb) 449 450 451Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 448.877 kb on + strandat 448.934 kb on + strandat 448.944 kb on + strandat 448.944 kb on + strandat 448.944 kb on + strandat 448.945 kb on - strandat 448.945 kb on - strandat 448.945 kb on - strandat 448.945 kb on - strandat 448.945 kb on - strandat 448.945 kb on - strandat 448.945 kb on - strandat 448.945 kb on - strandat 448.946 kb on + strandat 448.947 kb on - strandat 448.947 kb on - strandat 448.947 kb on - strandat 448.947 kb on - strandat 449.009 kb on + strandat 449.009 kb on + strandat 449.009 kb on + strandat 449.010 kb on - strandat 449.010 kb on - strandat 449.010 kb on - strandat 449.012 kb on + strandat 449.012 kb on + strandat 449.012 kb on + strandat 449.012 kb on + strandat 449.012 kb on + strandat 449.012 kb on + strandat 449.013 kb on - strandat 449.013 kb on - strandat 449.013 kb on - strandat 449.013 kb on - strandat 449.013 kb on - strandat 449.013 kb on - strandat 449.013 kb on - strandat 449.013 kb on - strandat 449.013 kb on - strandat 449.013 kb on - strandat 449.013 kb on - strandat 449.013 kb on - strandat 449.042 kb on + strandat 449.042 kb on + strandat 449.063 kb on + strandat 449.063 kb on + strandat 449.063 kb on + strandat 449.063 kb on + strandat 449.064 kb on - strandat 449.092 kb on + strandat 449.092 kb on + strandat 449.092 kb on + strandat 449.092 kb on + strandat 449.093 kb on - strandat 449.093 kb on - strandat 449.093 kb on - strandat 449.093 kb on - strandat 449.093 kb on - strandat 449.155 kb on - strandat 449.155 kb on - strandat 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.247 kb on + strand, within ABIE53_000415at 449.248 kb on - strand, within ABIE53_000415at 449.248 kb on - strand, within ABIE53_000415at 449.248 kb on - strand, within ABIE53_000415at 449.248 kb on - strand, within ABIE53_000415at 449.248 kb on - strand, within ABIE53_000415at 449.248 kb on - strand, within ABIE53_000415at 449.248 kb on - strand, within ABIE53_000415at 449.248 kb on - strand, within ABIE53_000415at 449.248 kb on - strand, within ABIE53_000415at 449.248 kb on - strand, within ABIE53_000415at 449.248 kb on - strand, within ABIE53_000415at 449.283 kb on + strand, within ABIE53_000415at 449.283 kb on + strand, within ABIE53_000415at 449.283 kb on + strand, within ABIE53_000415at 449.283 kb on + strand, within ABIE53_000415at 449.284 kb on - strand, within ABIE53_000415at 449.284 kb on - strand, within ABIE53_000415at 449.284 kb on - strand, within ABIE53_000415at 449.514 kb on - strand, within ABIE53_000415at 449.514 kb on - strand, within ABIE53_000415at 449.583 kb on - strand, within ABIE53_000415at 449.622 kb on + strand, within ABIE53_000415at 449.622 kb on + strand, within ABIE53_000415at 449.623 kb on - strand, within ABIE53_000415at 449.623 kb on - strand, within ABIE53_000415at 449.915 kb on + strand, within ABIE53_000416at 449.915 kb on + strand, within ABIE53_000416at 449.915 kb on + strand, within ABIE53_000416at 449.915 kb on + strand, within ABIE53_000416at 449.915 kb on + strand, within ABIE53_000416at 449.915 kb on + strand, within ABIE53_000416at 449.915 kb on + strand, within ABIE53_000416at 449.916 kb on - strand, within ABIE53_000416at 449.916 kb on - strand, within ABIE53_000416at 449.916 kb on - strand, within ABIE53_000416at 449.961 kb on + strand, within ABIE53_000416at 449.961 kb on + strand, within ABIE53_000416at 449.962 kb on - strand, within ABIE53_000416at 449.962 kb on - strand, within ABIE53_000416at 449.970 kb on + strand, within ABIE53_000416at 449.971 kb on - strand, within ABIE53_000416at 449.971 kb on - strand, within ABIE53_000416at 450.020 kb on + strand, within ABIE53_000416at 450.020 kb on + strand, within ABIE53_000416at 450.020 kb on + strand, within ABIE53_000416at 450.021 kb on - strand, within ABIE53_000416at 450.021 kb on - strand, within ABIE53_000416at 450.147 kb on + strand, within ABIE53_000416at 450.147 kb on + strand, within ABIE53_000416at 450.147 kb on + strand, within ABIE53_000416at 450.147 kb on + strand, within ABIE53_000416at 450.147 kb on + strand, within ABIE53_000416at 450.147 kb on + strand, within ABIE53_000416at 450.147 kb on + strand, within ABIE53_000416at 450.148 kb on - strand, within ABIE53_000416at 450.154 kb on + strand, within ABIE53_000416at 450.154 kb on + strand, within ABIE53_000416at 450.154 kb on + strand, within ABIE53_000416at 450.154 kb on + strand, within ABIE53_000416at 450.155 kb on - strand, within ABIE53_000416at 450.155 kb on - strand, within ABIE53_000416at 450.155 kb on - strand, within ABIE53_000416at 450.155 kb on - strand, within ABIE53_000416at 450.215 kb on + strand, within ABIE53_000416at 450.215 kb on + strand, within ABIE53_000416at 450.215 kb on + strand, within ABIE53_000416at 450.215 kb on + strand, within ABIE53_000416at 450.215 kb on + strand, within ABIE53_000416at 450.216 kb on - strand, within ABIE53_000416at 450.216 kb on - strand, within ABIE53_000416at 450.216 kb on - strand, within ABIE53_000416at 450.216 kb on - strand, within ABIE53_000416at 450.392 kb on + strand, within ABIE53_000416at 450.404 kb on + strand, within ABIE53_000416at 450.405 kb on - strand, within ABIE53_000416at 450.461 kb on + strand, within ABIE53_000416at 450.461 kb on + strand, within ABIE53_000416at 450.461 kb on + strand, within ABIE53_000416at 450.461 kb on + strand, within ABIE53_000416at 450.461 kb on + strand, within ABIE53_000416at 450.461 kb on + strand, within ABIE53_000416at 450.462 kb on - strand, within ABIE53_000416at 450.462 kb on - strand, within ABIE53_000416at 450.462 kb on - strand, within ABIE53_000416at 450.462 kb on - strand, within ABIE53_000416at 450.519 kb on + strandat 450.519 kb on + strandat 450.519 kb on + strandat 450.520 kb on - strandat 450.520 kb on - strandat 450.520 kb on - strandat 450.520 kb on - strandat 450.520 kb on - strandat 450.520 kb on - strandat 450.520 kb on - strandat 450.520 kb on - strandat 450.784 kb on + strandat 451.017 kb on + strand, within ABIE53_000417at 451.017 kb on + strand, within ABIE53_000417at 451.017 kb on + strand, within ABIE53_000417

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with 3-methyl-3-butenol 4.5 g/L
remove
448,877 + -4.1
448,934 + -1.6
448,944 + -3.2
448,944 + -2.6
448,944 + -1.2
448,945 - -0.3
448,945 - -0.6
448,945 - -1.1
448,945 - -1.0
448,945 - +1.0
448,945 - -1.3
448,945 - +0.7
448,945 - +0.3
448,946 + -4.6
448,947 - -0.6
448,947 - -0.1
448,947 - -0.9
448,947 - +0.1
449,009 + -3.5
449,009 + -2.9
449,009 + -0.8
449,010 - -0.3
449,010 - -0.5
449,010 - -1.2
449,012 + -3.0
449,012 + -2.2
449,012 + -2.0
449,012 + -5.7
449,012 + -0.1
449,012 + +0.2
449,013 - -3.0
449,013 - -1.1
449,013 - +0.4
449,013 - -0.3
449,013 - -0.2
449,013 - -0.3
449,013 - -0.4
449,013 - +1.1
449,013 - -0.3
449,013 - -1.4
449,013 - +0.7
449,013 - -0.4
449,042 + -1.6
449,042 + -3.4
449,063 + -2.8
449,063 + -1.9
449,063 + -1.0
449,063 + -4.1
449,064 - -0.3
449,092 + -1.2
449,092 + -4.5
449,092 + +0.1
449,092 + -0.8
449,093 - -0.2
449,093 - -0.1
449,093 - +0.2
449,093 - +0.1
449,093 - -0.8
449,155 - -1.9
449,155 - -0.3
449,247 + ABIE53_000415 0.14 -0.6
449,247 + ABIE53_000415 0.14 -0.2
449,247 + ABIE53_000415 0.14 -0.1
449,247 + ABIE53_000415 0.14 -0.5
449,247 + ABIE53_000415 0.14 +1.4
449,247 + ABIE53_000415 0.14 -0.5
449,247 + ABIE53_000415 0.14 -0.5
449,247 + ABIE53_000415 0.14 -0.3
449,247 + ABIE53_000415 0.14 +0.1
449,247 + ABIE53_000415 0.14 +0.2
449,247 + ABIE53_000415 0.14 +0.2
449,247 + ABIE53_000415 0.14 +1.6
449,247 + ABIE53_000415 0.14 -0.3
449,247 + ABIE53_000415 0.14 -0.5
449,247 + ABIE53_000415 0.14 -1.3
449,247 + ABIE53_000415 0.14 -1.0
449,247 + ABIE53_000415 0.14 -0.3
449,248 - ABIE53_000415 0.14 -0.0
449,248 - ABIE53_000415 0.14 -0.3
449,248 - ABIE53_000415 0.14 -0.6
449,248 - ABIE53_000415 0.14 +0.4
449,248 - ABIE53_000415 0.14 -0.2
449,248 - ABIE53_000415 0.14 -0.3
449,248 - ABIE53_000415 0.14 +0.3
449,248 - ABIE53_000415 0.14 +0.0
449,248 - ABIE53_000415 0.14 -0.8
449,248 - ABIE53_000415 0.14 -0.7
449,248 - ABIE53_000415 0.14 +1.9
449,283 + ABIE53_000415 0.19 -0.1
449,283 + ABIE53_000415 0.19 -0.3
449,283 + ABIE53_000415 0.19 -0.2
449,283 + ABIE53_000415 0.19 -1.5
449,284 - ABIE53_000415 0.19 -1.1
449,284 - ABIE53_000415 0.19 -0.6
449,284 - ABIE53_000415 0.19 +1.5
449,514 - ABIE53_000415 0.53 -0.6
449,514 - ABIE53_000415 0.53 -0.6
449,583 - ABIE53_000415 0.64 +0.2
449,622 + ABIE53_000415 0.69 +0.1
449,622 + ABIE53_000415 0.69 +0.5
449,623 - ABIE53_000415 0.70 -0.1
449,623 - ABIE53_000415 0.70 -1.1
449,915 + ABIE53_000416 0.15 -0.3
449,915 + ABIE53_000416 0.15 -0.8
449,915 + ABIE53_000416 0.15 +0.5
449,915 + ABIE53_000416 0.15 +1.2
449,915 + ABIE53_000416 0.15 -0.1
449,915 + ABIE53_000416 0.15 -1.4
449,915 + ABIE53_000416 0.15 -0.3
449,916 - ABIE53_000416 0.15 -0.6
449,916 - ABIE53_000416 0.15 +0.2
449,916 - ABIE53_000416 0.15 -0.1
449,961 + ABIE53_000416 0.21 -0.4
449,961 + ABIE53_000416 0.21 -0.2
449,962 - ABIE53_000416 0.21 -0.1
449,962 - ABIE53_000416 0.21 +1.0
449,970 + ABIE53_000416 0.22 +0.4
449,971 - ABIE53_000416 0.22 -0.1
449,971 - ABIE53_000416 0.22 -0.9
450,020 + ABIE53_000416 0.28 -2.3
450,020 + ABIE53_000416 0.28 -0.1
450,020 + ABIE53_000416 0.28 +1.4
450,021 - ABIE53_000416 0.28 +0.7
450,021 - ABIE53_000416 0.28 +0.4
450,147 + ABIE53_000416 0.44 -0.6
450,147 + ABIE53_000416 0.44 -0.5
450,147 + ABIE53_000416 0.44 +0.8
450,147 + ABIE53_000416 0.44 -1.0
450,147 + ABIE53_000416 0.44 +0.9
450,147 + ABIE53_000416 0.44 -0.4
450,147 + ABIE53_000416 0.44 +0.3
450,148 - ABIE53_000416 0.44 -1.0
450,154 + ABIE53_000416 0.45 -0.6
450,154 + ABIE53_000416 0.45 -0.0
450,154 + ABIE53_000416 0.45 -0.2
450,154 + ABIE53_000416 0.45 -0.6
450,155 - ABIE53_000416 0.45 -0.3
450,155 - ABIE53_000416 0.45 +0.2
450,155 - ABIE53_000416 0.45 -0.3
450,155 - ABIE53_000416 0.45 -1.0
450,215 + ABIE53_000416 0.52 +1.7
450,215 + ABIE53_000416 0.52 -0.8
450,215 + ABIE53_000416 0.52 -0.2
450,215 + ABIE53_000416 0.52 -0.3
450,215 + ABIE53_000416 0.52 -0.2
450,216 - ABIE53_000416 0.52 +0.3
450,216 - ABIE53_000416 0.52 +0.1
450,216 - ABIE53_000416 0.52 -3.0
450,216 - ABIE53_000416 0.52 -0.7
450,392 + ABIE53_000416 0.74 -0.6
450,404 + ABIE53_000416 0.76 -0.4
450,405 - ABIE53_000416 0.76 -0.4
450,461 + ABIE53_000416 0.83 -0.6
450,461 + ABIE53_000416 0.83 +0.9
450,461 + ABIE53_000416 0.83 -1.2
450,461 + ABIE53_000416 0.83 +0.9
450,461 + ABIE53_000416 0.83 -1.1
450,461 + ABIE53_000416 0.83 -1.4
450,462 - ABIE53_000416 0.83 -0.6
450,462 - ABIE53_000416 0.83 -0.3
450,462 - ABIE53_000416 0.83 +0.2
450,462 - ABIE53_000416 0.83 +0.0
450,519 + -1.0
450,519 + -0.0
450,519 + -0.6
450,520 - -0.0
450,520 - +1.2
450,520 - -0.3
450,520 - -0.9
450,520 - -0.7
450,520 - +0.2
450,520 - -1.0
450,520 - -1.3
450,784 + +1.4
451,017 + ABIE53_000417 0.35 +1.7
451,017 + ABIE53_000417 0.35 +0.2
451,017 + ABIE53_000417 0.35 +1.7

Or see this region's nucleotide sequence