Experiment: R2A with 3-methyl-3-butenol 4.5 g/L
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004006 and ABIE53_004007 are separated by 93 nucleotides ABIE53_004007 and ABIE53_004008 are separated by 410 nucleotides ABIE53_004008 and ABIE53_004009 are separated by 46 nucleotides ABIE53_004009 and ABIE53_004010 are separated by 83 nucleotides
ABIE53_004006: ABIE53_004006 - propanol-preferring alcohol dehydrogenase, at 164,116 to 165,102
_004006
ABIE53_004007: ABIE53_004007 - hypothetical protein, at 165,196 to 165,378
_004007
ABIE53_004008: ABIE53_004008 - hypothetical protein, at 165,789 to 166,169
_004008
ABIE53_004009: ABIE53_004009 - TetR/AcrR family transcriptional regulator of autoinduction and epiphytic fitness, at 166,216 to 166,830
_004009
ABIE53_004010: ABIE53_004010 - L-ascorbate metabolism protein UlaG (beta-lactamase superfamily), at 166,914 to 168,065
_004010
Position (kb) 165
166
167 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 165.197 kb on + strand at 165.240 kb on + strand, within ABIE53_004007 at 165.241 kb on - strand, within ABIE53_004007 at 165.343 kb on + strand, within ABIE53_004007 at 165.364 kb on + strand at 165.364 kb on + strand at 165.364 kb on + strand at 165.364 kb on + strand at 165.365 kb on - strand at 165.365 kb on - strand at 165.365 kb on - strand at 165.542 kb on - strand at 165.564 kb on + strand at 165.564 kb on + strand at 165.564 kb on + strand at 165.565 kb on - strand at 165.583 kb on + strand at 165.600 kb on - strand at 165.662 kb on + strand at 165.662 kb on + strand at 165.662 kb on + strand at 165.663 kb on - strand at 165.698 kb on + strand at 165.699 kb on - strand at 165.699 kb on - strand at 165.699 kb on - strand at 165.714 kb on + strand at 165.774 kb on + strand at 165.774 kb on + strand at 165.774 kb on + strand at 165.775 kb on - strand at 165.775 kb on - strand at 165.775 kb on - strand at 165.882 kb on + strand, within ABIE53_004008 at 165.882 kb on + strand, within ABIE53_004008 at 165.883 kb on - strand, within ABIE53_004008 at 165.941 kb on + strand, within ABIE53_004008 at 165.941 kb on + strand, within ABIE53_004008 at 165.942 kb on - strand, within ABIE53_004008 at 165.942 kb on - strand, within ABIE53_004008 at 165.995 kb on - strand, within ABIE53_004008 at 165.995 kb on - strand, within ABIE53_004008 at 166.060 kb on + strand, within ABIE53_004008 at 166.061 kb on - strand, within ABIE53_004008 at 166.061 kb on - strand, within ABIE53_004008 at 166.167 kb on + strand at 166.201 kb on + strand at 166.240 kb on - strand at 166.530 kb on + strand, within ABIE53_004009 at 166.530 kb on + strand, within ABIE53_004009 at 166.531 kb on - strand, within ABIE53_004009 at 166.531 kb on - strand, within ABIE53_004009 at 166.550 kb on - strand, within ABIE53_004009 at 166.679 kb on + strand, within ABIE53_004009 at 166.679 kb on + strand, within ABIE53_004009 at 166.679 kb on + strand, within ABIE53_004009 at 166.696 kb on + strand, within ABIE53_004009 at 166.696 kb on + strand, within ABIE53_004009 at 166.697 kb on - strand, within ABIE53_004009 at 166.697 kb on - strand, within ABIE53_004009 at 166.697 kb on - strand, within ABIE53_004009 at 166.697 kb on - strand, within ABIE53_004009 at 166.697 kb on - strand, within ABIE53_004009 at 166.773 kb on + strand at 166.869 kb on - strand at 167.168 kb on + strand, within ABIE53_004010 at 167.168 kb on + strand, within ABIE53_004010
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 3-methyl-3-butenol 4.5 g/L remove 165,197 + -1.6 165,240 + ABIE53_004007 0.24 -1.1 165,241 - ABIE53_004007 0.25 +0.2 165,343 + ABIE53_004007 0.80 +0.5 165,364 + -0.4 165,364 + -0.6 165,364 + +0.0 165,364 + +0.6 165,365 - -0.5 165,365 - -0.4 165,365 - +0.6 165,542 - -0.4 165,564 + -0.5 165,564 + -1.4 165,564 + -0.1 165,565 - -0.6 165,583 + -0.1 165,600 - +0.4 165,662 + -0.5 165,662 + -0.3 165,662 + -0.9 165,663 - +0.3 165,698 + -1.1 165,699 - +1.2 165,699 - +1.0 165,699 - -1.8 165,714 + -1.8 165,774 + -1.1 165,774 + -0.8 165,774 + -1.4 165,775 - +0.3 165,775 - -1.0 165,775 - -2.3 165,882 + ABIE53_004008 0.24 -0.6 165,882 + ABIE53_004008 0.24 +0.8 165,883 - ABIE53_004008 0.25 -1.7 165,941 + ABIE53_004008 0.40 -1.7 165,941 + ABIE53_004008 0.40 -0.2 165,942 - ABIE53_004008 0.40 -1.5 165,942 - ABIE53_004008 0.40 +0.2 165,995 - ABIE53_004008 0.54 +2.0 165,995 - ABIE53_004008 0.54 +0.4 166,060 + ABIE53_004008 0.71 -0.7 166,061 - ABIE53_004008 0.71 +0.4 166,061 - ABIE53_004008 0.71 -0.2 166,167 + -0.1 166,201 + -0.1 166,240 - -1.3 166,530 + ABIE53_004009 0.51 -1.4 166,530 + ABIE53_004009 0.51 +0.6 166,531 - ABIE53_004009 0.51 +0.5 166,531 - ABIE53_004009 0.51 -0.4 166,550 - ABIE53_004009 0.54 +1.1 166,679 + ABIE53_004009 0.75 +0.2 166,679 + ABIE53_004009 0.75 +0.9 166,679 + ABIE53_004009 0.75 -0.8 166,696 + ABIE53_004009 0.78 -0.4 166,696 + ABIE53_004009 0.78 -1.5 166,697 - ABIE53_004009 0.78 -1.9 166,697 - ABIE53_004009 0.78 +0.1 166,697 - ABIE53_004009 0.78 -3.2 166,697 - ABIE53_004009 0.78 -0.2 166,697 - ABIE53_004009 0.78 -1.4 166,773 + -0.9 166,869 - +0.5 167,168 + ABIE53_004010 0.22 +0.3 167,168 + ABIE53_004010 0.22 -0.8
Or see this region's nucleotide sequence