Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001606

Experiment: R2A with 3-methyl-3-butenol 4.5 g/L

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with 3-methyl-3-butenol 4.5 g/L
1,788,370	+				-3.4
1,788,371	-				-1.9
1,788,433	+				+0.1
1,788,433	+				-0.9
1,788,434	-				-0.0
1,788,466	+				-0.3
1,788,487	+				+0.4
1,788,487	+				+0.7
1,788,487	+				+0.7
1,788,487	+				-1.3
1,788,487	+				-0.2
1,788,487	+				-0.6
1,788,487	+				+1.1
1,788,488	-				+0.0
1,788,569	+		ABIE53_001605	0.19	-0.9
1,788,569	+		ABIE53_001605	0.19	-0.0
1,788,569	+		ABIE53_001605	0.19	+0.8
1,788,570	-		ABIE53_001605	0.19	+0.5
1,788,570	-		ABIE53_001605	0.19	+1.1
1,788,570	-		ABIE53_001605	0.19	-0.3
1,788,570	-		ABIE53_001605	0.19	-0.1
1,788,750	-		ABIE53_001605	0.44	+1.0
1,788,764	+		ABIE53_001605	0.46	-1.7
1,788,764	+		ABIE53_001605	0.46	+0.5
1,788,764	+		ABIE53_001605	0.46	-0.2
1,788,764	+		ABIE53_001605	0.46	-0.0
1,788,764	+		ABIE53_001605	0.46	-0.0
1,788,764	+		ABIE53_001605	0.46	-0.3
1,788,764	+		ABIE53_001605	0.46	+0.3
1,788,764	+		ABIE53_001605	0.46	-0.8
1,788,765	-		ABIE53_001605	0.46	-0.7
1,788,765	-		ABIE53_001605	0.46	+0.1
1,788,765	-		ABIE53_001605	0.46	+0.3
1,788,765	-		ABIE53_001605	0.46	-0.7
1,788,765	-		ABIE53_001605	0.46	+0.8
1,788,765	-		ABIE53_001605	0.46	-0.3
1,788,765	-		ABIE53_001605	0.46	+0.2
1,788,765	-		ABIE53_001605	0.46	+1.3
1,788,765	-		ABIE53_001605	0.46	+0.2
1,788,770	+		ABIE53_001605	0.46	-0.9
1,788,771	-		ABIE53_001605	0.47	-0.9
1,788,800	+		ABIE53_001605	0.51	-0.5
1,788,824	+		ABIE53_001605	0.54	-0.2
1,788,824	+		ABIE53_001605	0.54	-0.6
1,788,824	+		ABIE53_001605	0.54	+1.1
1,788,824	+		ABIE53_001605	0.54	-0.4
1,788,824	+		ABIE53_001605	0.54	-0.4
1,788,824	+		ABIE53_001605	0.54	-0.9
1,788,825	-		ABIE53_001605	0.54	-0.3
1,788,825	-		ABIE53_001605	0.54	+2.6
1,788,825	-		ABIE53_001605	0.54	-0.5
1,788,825	-		ABIE53_001605	0.54	+1.2
1,788,889	+		ABIE53_001605	0.63	-0.6
1,788,889	+		ABIE53_001605	0.63	-0.3
1,788,895	+		ABIE53_001605	0.64	-0.8
1,789,017	+		ABIE53_001605	0.81	-0.1
1,789,135	+				+0.3
1,789,135	+				-0.5
1,789,158	+				+0.2
1,789,158	+				+0.7
1,789,158	+				+0.3
1,789,159	-				+0.2
1,789,175	+				-0.1
1,789,175	+				-0.8
1,789,176	-				+1.8
1,789,176	-				+2.1
1,789,176	-				-1.3
1,789,176	-				+0.9
1,789,176	-				+1.1
1,789,215	+				+0.2
1,789,215	+				+0.2
1,789,216	-				-0.3
1,789,216	-				-1.4
1,789,218	+				+0.5
1,789,219	-				+0.7
1,789,219	-				-0.7
1,789,335	+				-0.4
1,789,424	+		ABIE53_001606	0.28	+0.5
1,789,424	+		ABIE53_001606	0.28	-0.4
1,789,425	-		ABIE53_001606	0.29	+0.7
1,789,425	-		ABIE53_001606	0.29	-1.3
1,789,462	+		ABIE53_001606	0.43	-0.9
1,789,462	+		ABIE53_001606	0.43	-0.7
1,789,472	-		ABIE53_001606	0.47	+2.2
1,789,472	-		ABIE53_001606	0.47	+4.1
1,789,472	-		ABIE53_001606	0.47	+1.5
1,789,517	+		ABIE53_001606	0.64	-0.8
1,789,518	-		ABIE53_001606	0.65	+4.1
1,789,641	+				+0.0
1,789,653	+				+0.7
1,789,924	+		ABIE53_001607	0.53	+0.4
1,789,924	+		ABIE53_001607	0.53	-0.2
1,790,093	+		ABIE53_001607	0.85	+0.5
1,790,093	+		ABIE53_001607	0.85	+1.8
1,790,213	+				+0.0
1,790,213	+				-0.5
1,790,213	+				-0.2
1,790,213	+				+1.1
1,790,213	+				+1.5
1,790,214	-				-0.4
1,790,214	-				-0.4
1,790,214	-				-0.5
1,790,214	-				+0.2
1,790,277	+				+1.8
1,790,277	+				-0.4
1,790,277	+				+0.7
1,790,277	+				-0.4
1,790,277	+				+0.2
1,790,277	+				+0.3
1,790,277	+				-0.4
1,790,277	+				+0.5
1,790,277	+				-0.9
1,790,277	+				+0.5
1,790,277	+				+0.6
1,790,278	-				+0.7
1,790,278	-				-0.7
1,790,278	-				-0.0
1,790,278	-				-0.6
1,790,278	-				-0.0
1,790,278	-				+0.5
1,790,309	+				-1.9
1,790,310	-				-0.2
1,790,411	-				+0.2
1,790,438	-				+0.1
1,790,454	+				-2.2
1,790,454	+				-0.5
1,790,455	-				-0.5
1,790,455	-				+0.1
1,790,455	-				-0.1
1,790,455	-				-0.7
1,790,455	-				-0.6
1,790,455	-				-1.4