Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17940

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17950 and HMPREF1058_RS17945 are separated by 12 nucleotidesHMPREF1058_RS17945 and HMPREF1058_RS17940 are separated by 152 nucleotidesHMPREF1058_RS17940 and HMPREF1058_RS17935 are separated by 18 nucleotides HMPREF1058_RS17950: HMPREF1058_RS17950 - biotin synthase BioB, at 293,389 to 294,348 _RS17950 HMPREF1058_RS17945: HMPREF1058_RS17945 - hypothetical protein, at 294,361 to 294,726 _RS17945 HMPREF1058_RS17940: HMPREF1058_RS17940 - alpha-amylase, at 294,879 to 296,291 _RS17940 HMPREF1058_RS17935: HMPREF1058_RS17935 - glycosyltransferase, at 296,310 to 297,575 _RS17935 Position (kb) 294 295 296 297Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 293.966 kb on + strand, within HMPREF1058_RS17950at 294.104 kb on + strand, within HMPREF1058_RS17950at 294.248 kb on + strand, within HMPREF1058_RS17950at 294.350 kb on + strandat 294.350 kb on + strandat 294.350 kb on + strandat 294.350 kb on + strandat 294.351 kb on - strandat 294.518 kb on + strand, within HMPREF1058_RS17945at 294.519 kb on - strand, within HMPREF1058_RS17945at 294.630 kb on + strand, within HMPREF1058_RS17945at 294.631 kb on - strand, within HMPREF1058_RS17945at 294.634 kb on + strand, within HMPREF1058_RS17945at 294.634 kb on + strand, within HMPREF1058_RS17945at 294.635 kb on - strand, within HMPREF1058_RS17945at 294.635 kb on - strand, within HMPREF1058_RS17945at 294.635 kb on - strand, within HMPREF1058_RS17945at 294.651 kb on + strand, within HMPREF1058_RS17945at 294.652 kb on - strand, within HMPREF1058_RS17945at 294.660 kb on + strand, within HMPREF1058_RS17945at 294.661 kb on - strand, within HMPREF1058_RS17945at 294.666 kb on - strand, within HMPREF1058_RS17945at 294.694 kb on + strandat 294.699 kb on + strandat 294.700 kb on - strandat 294.700 kb on - strandat 294.785 kb on - strandat 294.789 kb on - strandat 294.819 kb on + strandat 294.865 kb on - strandat 294.865 kb on - strandat 294.867 kb on - strandat 294.867 kb on - strandat 294.872 kb on - strandat 295.110 kb on - strand, within HMPREF1058_RS17940at 295.142 kb on + strand, within HMPREF1058_RS17940at 295.165 kb on + strand, within HMPREF1058_RS17940at 295.165 kb on + strand, within HMPREF1058_RS17940at 295.166 kb on - strand, within HMPREF1058_RS17940at 295.166 kb on - strand, within HMPREF1058_RS17940at 295.166 kb on - strand, within HMPREF1058_RS17940at 295.196 kb on - strand, within HMPREF1058_RS17940at 295.253 kb on + strand, within HMPREF1058_RS17940at 295.327 kb on + strand, within HMPREF1058_RS17940at 295.406 kb on + strand, within HMPREF1058_RS17940at 295.406 kb on + strand, within HMPREF1058_RS17940at 295.475 kb on + strand, within HMPREF1058_RS17940at 295.620 kb on + strand, within HMPREF1058_RS17940at 295.623 kb on - strand, within HMPREF1058_RS17940at 295.624 kb on + strand, within HMPREF1058_RS17940at 295.624 kb on + strand, within HMPREF1058_RS17940at 295.664 kb on + strand, within HMPREF1058_RS17940at 295.799 kb on + strand, within HMPREF1058_RS17940at 295.827 kb on - strand, within HMPREF1058_RS17940at 295.836 kb on - strand, within HMPREF1058_RS17940at 295.891 kb on - strand, within HMPREF1058_RS17940at 296.079 kb on - strand, within HMPREF1058_RS17940at 296.100 kb on - strand, within HMPREF1058_RS17940at 296.147 kb on + strand, within HMPREF1058_RS17940at 296.148 kb on - strand, within HMPREF1058_RS17940at 296.148 kb on - strand, within HMPREF1058_RS17940at 296.150 kb on - strandat 296.200 kb on + strandat 296.201 kb on - strandat 296.207 kb on - strandat 296.221 kb on - strandat 296.221 kb on - strandat 296.221 kb on - strandat 296.221 kb on - strandat 296.280 kb on + strandat 296.297 kb on - strandat 296.300 kb on + strandat 296.301 kb on - strandat 296.316 kb on - strandat 296.316 kb on - strandat 296.341 kb on + strandat 296.378 kb on + strandat 296.379 kb on - strandat 296.444 kb on + strand, within HMPREF1058_RS17935at 296.444 kb on + strand, within HMPREF1058_RS17935at 296.445 kb on - strand, within HMPREF1058_RS17935at 296.449 kb on + strand, within HMPREF1058_RS17935at 296.450 kb on - strand, within HMPREF1058_RS17935at 296.450 kb on - strand, within HMPREF1058_RS17935at 296.540 kb on + strand, within HMPREF1058_RS17935at 296.613 kb on + strand, within HMPREF1058_RS17935at 296.613 kb on + strand, within HMPREF1058_RS17935at 296.630 kb on - strand, within HMPREF1058_RS17935at 296.800 kb on + strand, within HMPREF1058_RS17935at 296.991 kb on - strand, within HMPREF1058_RS17935at 296.991 kb on - strand, within HMPREF1058_RS17935at 296.994 kb on - strand, within HMPREF1058_RS17935at 297.031 kb on + strand, within HMPREF1058_RS17935at 297.031 kb on + strand, within HMPREF1058_RS17935at 297.031 kb on + strand, within HMPREF1058_RS17935at 297.031 kb on + strand, within HMPREF1058_RS17935at 297.032 kb on - strand, within HMPREF1058_RS17935at 297.033 kb on + strand, within HMPREF1058_RS17935at 297.034 kb on - strand, within HMPREF1058_RS17935at 297.034 kb on - strand, within HMPREF1058_RS17935at 297.034 kb on - strand, within HMPREF1058_RS17935at 297.204 kb on - strand, within HMPREF1058_RS17935at 297.261 kb on - strand, within HMPREF1058_RS17935at 297.284 kb on + strand, within HMPREF1058_RS17935at 297.284 kb on + strand, within HMPREF1058_RS17935at 297.284 kb on + strand, within HMPREF1058_RS17935at 297.285 kb on - strand, within HMPREF1058_RS17935at 297.285 kb on - strand, within HMPREF1058_RS17935at 297.286 kb on + strand, within HMPREF1058_RS17935

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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293,966 + HMPREF1058_RS17950 0.60 -2.1
294,104 + HMPREF1058_RS17950 0.74 -0.8
294,248 + HMPREF1058_RS17950 0.89 -4.1
294,350 + -3.0
294,350 + -2.3
294,350 + -1.5
294,350 + -0.5
294,351 - +1.0
294,518 + HMPREF1058_RS17945 0.43 -2.7
294,519 - HMPREF1058_RS17945 0.43 -2.7
294,630 + HMPREF1058_RS17945 0.73 -2.0
294,631 - HMPREF1058_RS17945 0.74 -4.6
294,634 + HMPREF1058_RS17945 0.75 -3.9
294,634 + HMPREF1058_RS17945 0.75 +0.3
294,635 - HMPREF1058_RS17945 0.75 -2.1
294,635 - HMPREF1058_RS17945 0.75 -5.8
294,635 - HMPREF1058_RS17945 0.75 -3.3
294,651 + HMPREF1058_RS17945 0.79 -1.9
294,652 - HMPREF1058_RS17945 0.80 +0.0
294,660 + HMPREF1058_RS17945 0.82 -3.8
294,661 - HMPREF1058_RS17945 0.82 +0.6
294,666 - HMPREF1058_RS17945 0.83 -0.0
294,694 + +1.0
294,699 + -3.3
294,700 - -1.7
294,700 - -2.5
294,785 - -1.1
294,789 - +0.6
294,819 + -2.3
294,865 - -1.0
294,865 - -3.2
294,867 - -0.2
294,867 - -1.7
294,872 - -1.2
295,110 - HMPREF1058_RS17940 0.16 -3.3
295,142 + HMPREF1058_RS17940 0.19 -3.1
295,165 + HMPREF1058_RS17940 0.20 -2.8
295,165 + HMPREF1058_RS17940 0.20 -2.5
295,166 - HMPREF1058_RS17940 0.20 -3.3
295,166 - HMPREF1058_RS17940 0.20 -3.4
295,166 - HMPREF1058_RS17940 0.20 -3.5
295,196 - HMPREF1058_RS17940 0.22 -0.4
295,253 + HMPREF1058_RS17940 0.26 -2.5
295,327 + HMPREF1058_RS17940 0.32 -4.0
295,406 + HMPREF1058_RS17940 0.37 -0.8
295,406 + HMPREF1058_RS17940 0.37 -3.9
295,475 + HMPREF1058_RS17940 0.42 -1.9
295,620 + HMPREF1058_RS17940 0.52 -2.0
295,623 - HMPREF1058_RS17940 0.53 -2.9
295,624 + HMPREF1058_RS17940 0.53 -3.7
295,624 + HMPREF1058_RS17940 0.53 -2.9
295,664 + HMPREF1058_RS17940 0.56 -2.1
295,799 + HMPREF1058_RS17940 0.65 -1.7
295,827 - HMPREF1058_RS17940 0.67 -3.3
295,836 - HMPREF1058_RS17940 0.68 -3.0
295,891 - HMPREF1058_RS17940 0.72 -1.2
296,079 - HMPREF1058_RS17940 0.85 -3.9
296,100 - HMPREF1058_RS17940 0.86 -3.1
296,147 + HMPREF1058_RS17940 0.90 -2.8
296,148 - HMPREF1058_RS17940 0.90 -3.2
296,148 - HMPREF1058_RS17940 0.90 -2.0
296,150 - -4.9
296,200 + -2.7
296,201 - -4.1
296,207 - -4.0
296,221 - -2.2
296,221 - -3.9
296,221 - -3.5
296,221 - -3.9
296,280 + -3.2
296,297 - -1.2
296,300 + -1.8
296,301 - -5.2
296,316 - -1.4
296,316 - -1.0
296,341 + -1.6
296,378 + +0.3
296,379 - -0.2
296,444 + HMPREF1058_RS17935 0.11 -2.0
296,444 + HMPREF1058_RS17935 0.11 -2.1
296,445 - HMPREF1058_RS17935 0.11 -3.8
296,449 + HMPREF1058_RS17935 0.11 -3.4
296,450 - HMPREF1058_RS17935 0.11 -4.4
296,450 - HMPREF1058_RS17935 0.11 -1.8
296,540 + HMPREF1058_RS17935 0.18 -4.0
296,613 + HMPREF1058_RS17935 0.24 -3.3
296,613 + HMPREF1058_RS17935 0.24 -1.0
296,630 - HMPREF1058_RS17935 0.25 -3.1
296,800 + HMPREF1058_RS17935 0.39 -3.6
296,991 - HMPREF1058_RS17935 0.54 -4.4
296,991 - HMPREF1058_RS17935 0.54 -1.0
296,994 - HMPREF1058_RS17935 0.54 -2.2
297,031 + HMPREF1058_RS17935 0.57 -4.0
297,031 + HMPREF1058_RS17935 0.57 -1.9
297,031 + HMPREF1058_RS17935 0.57 -2.9
297,031 + HMPREF1058_RS17935 0.57 -2.2
297,032 - HMPREF1058_RS17935 0.57 -4.1
297,033 + HMPREF1058_RS17935 0.57 -3.2
297,034 - HMPREF1058_RS17935 0.57 -3.5
297,034 - HMPREF1058_RS17935 0.57 -1.2
297,034 - HMPREF1058_RS17935 0.57 -2.7
297,204 - HMPREF1058_RS17935 0.71 -1.8
297,261 - HMPREF1058_RS17935 0.75 -3.7
297,284 + HMPREF1058_RS17935 0.77 -2.1
297,284 + HMPREF1058_RS17935 0.77 -1.2
297,284 + HMPREF1058_RS17935 0.77 -3.2
297,285 - HMPREF1058_RS17935 0.77 -0.8
297,285 - HMPREF1058_RS17935 0.77 -3.3
297,286 + HMPREF1058_RS17935 0.77 -0.2

Or see this region's nucleotide sequence