Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17925 and HMPREF1058_RS17920 are separated by 482 nucleotides HMPREF1058_RS17920 and HMPREF1058_RS17915 are separated by 97 nucleotides
HMPREF1058_RS17925: HMPREF1058_RS17925 - rhomboid family intramembrane serine protease, at 299,711 to 300,376
_RS17925
HMPREF1058_RS17920: HMPREF1058_RS17920 - formate-dependent phosphoribosylglycinamide formyltransferase, at 300,859 to 302,028
_RS17920
HMPREF1058_RS17915: HMPREF1058_RS17915 - PspC domain-containing protein, at 302,126 to 303,172
_RS17915
Position (kb) 300
301
302
303 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 299.905 kb on - strand, within HMPREF1058_RS17925 at 299.938 kb on - strand, within HMPREF1058_RS17925 at 299.978 kb on - strand, within HMPREF1058_RS17925 at 299.979 kb on + strand, within HMPREF1058_RS17925 at 300.021 kb on + strand, within HMPREF1058_RS17925 at 300.043 kb on + strand, within HMPREF1058_RS17925 at 300.058 kb on + strand, within HMPREF1058_RS17925 at 300.060 kb on + strand, within HMPREF1058_RS17925 at 300.123 kb on + strand, within HMPREF1058_RS17925 at 300.151 kb on - strand, within HMPREF1058_RS17925 at 300.152 kb on + strand, within HMPREF1058_RS17925 at 300.452 kb on + strand at 300.481 kb on - strand at 300.481 kb on - strand at 300.524 kb on + strand at 300.525 kb on - strand at 300.529 kb on + strand at 300.644 kb on + strand at 300.644 kb on + strand at 300.677 kb on + strand at 300.682 kb on + strand at 300.748 kb on + strand at 300.838 kb on + strand at 300.839 kb on - strand at 300.850 kb on + strand at 300.851 kb on - strand at 300.851 kb on - strand at 300.857 kb on + strand at 300.857 kb on + strand at 300.936 kb on - strand at 300.972 kb on + strand at 300.973 kb on - strand at 300.991 kb on - strand, within HMPREF1058_RS17920 at 300.999 kb on - strand, within HMPREF1058_RS17920 at 301.002 kb on + strand, within HMPREF1058_RS17920 at 301.002 kb on + strand, within HMPREF1058_RS17920 at 301.385 kb on - strand, within HMPREF1058_RS17920 at 301.385 kb on - strand, within HMPREF1058_RS17920 at 301.414 kb on - strand, within HMPREF1058_RS17920 at 301.414 kb on - strand, within HMPREF1058_RS17920 at 301.664 kb on + strand, within HMPREF1058_RS17920 at 301.878 kb on + strand, within HMPREF1058_RS17920 at 301.929 kb on - strand at 301.950 kb on - strand at 301.959 kb on + strand at 302.032 kb on - strand at 302.035 kb on + strand at 302.035 kb on + strand at 302.036 kb on - strand at 302.037 kb on + strand at 302.037 kb on + strand at 302.038 kb on - strand at 302.117 kb on + strand at 302.134 kb on + strand at 302.136 kb on + strand at 302.210 kb on + strand at 302.222 kb on - strand at 302.392 kb on - strand, within HMPREF1058_RS17915 at 302.463 kb on - strand, within HMPREF1058_RS17915 at 302.471 kb on + strand, within HMPREF1058_RS17915 at 302.564 kb on - strand, within HMPREF1058_RS17915 at 302.589 kb on + strand, within HMPREF1058_RS17915 at 302.589 kb on + strand, within HMPREF1058_RS17915 at 302.633 kb on - strand, within HMPREF1058_RS17915 at 302.633 kb on - strand, within HMPREF1058_RS17915 at 302.633 kb on - strand, within HMPREF1058_RS17915 at 302.701 kb on + strand, within HMPREF1058_RS17915 at 302.716 kb on + strand, within HMPREF1058_RS17915 at 302.717 kb on - strand, within HMPREF1058_RS17915 at 302.760 kb on - strand, within HMPREF1058_RS17915 at 302.767 kb on + strand at 302.768 kb on - strand, within HMPREF1058_RS17915 at 302.796 kb on + strand, within HMPREF1058_RS17915 at 302.797 kb on - strand, within HMPREF1058_RS17915 at 302.825 kb on + strand, within HMPREF1058_RS17915 at 302.829 kb on - strand, within HMPREF1058_RS17915 at 302.829 kb on - strand, within HMPREF1058_RS17915 at 302.833 kb on + strand, within HMPREF1058_RS17915 at 302.972 kb on - strand, within HMPREF1058_RS17915 at 303.019 kb on + strand, within HMPREF1058_RS17915 at 303.020 kb on - strand, within HMPREF1058_RS17915 at 303.023 kb on + strand, within HMPREF1058_RS17915 at 303.023 kb on + strand, within HMPREF1058_RS17915 at 303.024 kb on - strand, within HMPREF1058_RS17915
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 299,905 - HMPREF1058_RS17925 0.29 +2.8 299,938 - HMPREF1058_RS17925 0.34 -0.8 299,978 - HMPREF1058_RS17925 0.40 +2.6 299,979 + HMPREF1058_RS17925 0.40 -1.1 300,021 + HMPREF1058_RS17925 0.47 -0.5 300,043 + HMPREF1058_RS17925 0.50 +0.0 300,058 + HMPREF1058_RS17925 0.52 -1.6 300,060 + HMPREF1058_RS17925 0.52 +3.7 300,123 + HMPREF1058_RS17925 0.62 +1.3 300,151 - HMPREF1058_RS17925 0.66 -0.1 300,152 + HMPREF1058_RS17925 0.66 -0.5 300,452 + -3.1 300,481 - -2.3 300,481 - +2.5 300,524 + -2.5 300,525 - -0.3 300,529 + -0.8 300,644 + +0.4 300,644 + -0.5 300,677 + -1.7 300,682 + -2.0 300,748 + -0.6 300,838 + -0.1 300,839 - -4.0 300,850 + -0.8 300,851 - +0.8 300,851 - +0.5 300,857 + -0.4 300,857 + -1.6 300,936 - +0.3 300,972 + -3.0 300,973 - -3.3 300,991 - HMPREF1058_RS17920 0.11 -3.4 300,999 - HMPREF1058_RS17920 0.12 -1.4 301,002 + HMPREF1058_RS17920 0.12 -1.6 301,002 + HMPREF1058_RS17920 0.12 -1.3 301,385 - HMPREF1058_RS17920 0.45 -3.7 301,385 - HMPREF1058_RS17920 0.45 -0.8 301,414 - HMPREF1058_RS17920 0.47 -0.2 301,414 - HMPREF1058_RS17920 0.47 -3.9 301,664 + HMPREF1058_RS17920 0.69 -0.5 301,878 + HMPREF1058_RS17920 0.87 -3.8 301,929 - -1.0 301,950 - -5.4 301,959 + -4.4 302,032 - -4.1 302,035 + -0.2 302,035 + -1.8 302,036 - -2.3 302,037 + -1.1 302,037 + -2.6 302,038 - -4.3 302,117 + -1.3 302,134 + -3.2 302,136 + -0.8 302,210 + -0.2 302,222 - -1.6 302,392 - HMPREF1058_RS17915 0.25 -2.0 302,463 - HMPREF1058_RS17915 0.32 +0.6 302,471 + HMPREF1058_RS17915 0.33 -3.0 302,564 - HMPREF1058_RS17915 0.42 -0.9 302,589 + HMPREF1058_RS17915 0.44 -2.2 302,589 + HMPREF1058_RS17915 0.44 +0.3 302,633 - HMPREF1058_RS17915 0.48 -2.1 302,633 - HMPREF1058_RS17915 0.48 -0.7 302,633 - HMPREF1058_RS17915 0.48 +0.3 302,701 + HMPREF1058_RS17915 0.55 -1.6 302,716 + HMPREF1058_RS17915 0.56 -0.8 302,717 - HMPREF1058_RS17915 0.56 +1.4 302,760 - HMPREF1058_RS17915 0.61 -1.0 302,767 + +2.6 302,768 - HMPREF1058_RS17915 0.61 +1.1 302,796 + HMPREF1058_RS17915 0.64 -1.6 302,797 - HMPREF1058_RS17915 0.64 +0.6 302,825 + HMPREF1058_RS17915 0.67 -2.1 302,829 - HMPREF1058_RS17915 0.67 -1.3 302,829 - HMPREF1058_RS17915 0.67 -0.4 302,833 + HMPREF1058_RS17915 0.68 -0.5 302,972 - HMPREF1058_RS17915 0.81 +0.0 303,019 + HMPREF1058_RS17915 0.85 -1.8 303,020 - HMPREF1058_RS17915 0.85 -1.3 303,023 + HMPREF1058_RS17915 0.86 -0.9 303,023 + HMPREF1058_RS17915 0.86 -1.1 303,024 - HMPREF1058_RS17915 0.86 +0.5
Or see this region's nucleotide sequence