Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17280

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS17290 and HMPREF1058_RS17285 are separated by 28 nucleotidesHMPREF1058_RS17285 and HMPREF1058_RS17280 are separated by 82 nucleotidesHMPREF1058_RS17280 and HMPREF1058_RS17275 are separated by 20 nucleotides HMPREF1058_RS17290: HMPREF1058_RS17290 - glycosyltransferase family 2 protein, at 476,011 to 476,916 _RS17290 HMPREF1058_RS17285: HMPREF1058_RS17285 - glycosyltransferase, at 476,945 to 477,763 _RS17285 HMPREF1058_RS17280: HMPREF1058_RS17280 - GDP-mannose 4,6-dehydratase, at 477,846 to 478,925 _RS17280 HMPREF1058_RS17275: HMPREF1058_RS17275 - GDP-L-fucose synthase, at 478,946 to 480,028 _RS17275 Position (kb) 477 478 479Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 476.902 kb on + strandat 476.911 kb on - strandat 476.922 kb on + strandat 476.922 kb on + strandat 476.923 kb on - strandat 476.929 kb on + strandat 477.004 kb on - strandat 477.036 kb on + strand, within HMPREF1058_RS17285at 477.036 kb on + strand, within HMPREF1058_RS17285at 477.036 kb on + strand, within HMPREF1058_RS17285at 477.112 kb on + strand, within HMPREF1058_RS17285at 477.112 kb on + strand, within HMPREF1058_RS17285at 477.139 kb on + strand, within HMPREF1058_RS17285at 477.143 kb on + strand, within HMPREF1058_RS17285at 477.143 kb on + strand, within HMPREF1058_RS17285at 477.144 kb on - strand, within HMPREF1058_RS17285at 477.144 kb on - strand, within HMPREF1058_RS17285at 477.165 kb on + strand, within HMPREF1058_RS17285at 477.165 kb on + strand, within HMPREF1058_RS17285at 477.280 kb on - strand, within HMPREF1058_RS17285at 477.281 kb on + strand, within HMPREF1058_RS17285at 477.281 kb on + strand, within HMPREF1058_RS17285at 477.281 kb on + strand, within HMPREF1058_RS17285at 477.301 kb on - strand, within HMPREF1058_RS17285at 477.301 kb on - strand, within HMPREF1058_RS17285at 477.355 kb on + strand, within HMPREF1058_RS17285at 477.403 kb on + strand, within HMPREF1058_RS17285at 477.404 kb on - strand, within HMPREF1058_RS17285at 477.512 kb on + strand, within HMPREF1058_RS17285at 477.515 kb on + strand, within HMPREF1058_RS17285at 477.609 kb on - strand, within HMPREF1058_RS17285at 477.624 kb on + strand, within HMPREF1058_RS17285at 477.625 kb on - strand, within HMPREF1058_RS17285at 477.732 kb on + strandat 477.792 kb on + strandat 477.793 kb on - strandat 477.814 kb on + strandat 477.934 kb on + strandat 477.934 kb on + strandat 477.935 kb on - strandat 477.965 kb on + strand, within HMPREF1058_RS17280at 477.965 kb on + strand, within HMPREF1058_RS17280at 477.965 kb on + strand, within HMPREF1058_RS17280at 477.977 kb on + strand, within HMPREF1058_RS17280at 477.980 kb on - strand, within HMPREF1058_RS17280at 478.064 kb on + strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.084 kb on + strand, within HMPREF1058_RS17280at 478.094 kb on - strandat 478.135 kb on + strand, within HMPREF1058_RS17280at 478.135 kb on + strand, within HMPREF1058_RS17280at 478.136 kb on - strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.217 kb on - strand, within HMPREF1058_RS17280at 478.348 kb on - strand, within HMPREF1058_RS17280at 478.502 kb on + strand, within HMPREF1058_RS17280at 478.502 kb on + strand, within HMPREF1058_RS17280at 478.509 kb on + strand, within HMPREF1058_RS17280at 478.558 kb on - strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.569 kb on - strand, within HMPREF1058_RS17280at 478.610 kb on + strand, within HMPREF1058_RS17280at 478.716 kb on - strand, within HMPREF1058_RS17280at 478.728 kb on - strand, within HMPREF1058_RS17280at 478.761 kb on + strand, within HMPREF1058_RS17280at 478.762 kb on - strand, within HMPREF1058_RS17280at 478.967 kb on + strandat 478.971 kb on + strandat 479.003 kb on - strandat 479.152 kb on + strand, within HMPREF1058_RS17275at 479.172 kb on - strand, within HMPREF1058_RS17275at 479.186 kb on - strand, within HMPREF1058_RS17275at 479.190 kb on - strand, within HMPREF1058_RS17275at 479.206 kb on - strand, within HMPREF1058_RS17275at 479.409 kb on - strand, within HMPREF1058_RS17275at 479.421 kb on - strand, within HMPREF1058_RS17275at 479.421 kb on - strand, within HMPREF1058_RS17275at 479.421 kb on - strand, within HMPREF1058_RS17275at 479.462 kb on - strand, within HMPREF1058_RS17275at 479.553 kb on + strand, within HMPREF1058_RS17275at 479.553 kb on + strand, within HMPREF1058_RS17275at 479.554 kb on - strand, within HMPREF1058_RS17275at 479.554 kb on - strand, within HMPREF1058_RS17275at 479.554 kb on - strand, within HMPREF1058_RS17275at 479.588 kb on - strand, within HMPREF1058_RS17275at 479.759 kb on - strand, within HMPREF1058_RS17275at 479.784 kb on + strand, within HMPREF1058_RS17275at 479.868 kb on - strand, within HMPREF1058_RS17275at 479.881 kb on + strand, within HMPREF1058_RS17275at 479.881 kb on + strand, within HMPREF1058_RS17275

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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476,902 + +1.5
476,911 - -2.7
476,922 + +1.7
476,922 + +2.1
476,923 - -2.0
476,929 + -0.7
477,004 - +3.5
477,036 + HMPREF1058_RS17285 0.11 -3.2
477,036 + HMPREF1058_RS17285 0.11 +1.1
477,036 + HMPREF1058_RS17285 0.11 +0.2
477,112 + HMPREF1058_RS17285 0.20 +0.4
477,112 + HMPREF1058_RS17285 0.20 +2.7
477,139 + HMPREF1058_RS17285 0.24 -0.5
477,143 + HMPREF1058_RS17285 0.24 +0.1
477,143 + HMPREF1058_RS17285 0.24 +3.0
477,144 - HMPREF1058_RS17285 0.24 -2.7
477,144 - HMPREF1058_RS17285 0.24 -1.2
477,165 + HMPREF1058_RS17285 0.27 +0.8
477,165 + HMPREF1058_RS17285 0.27 -1.2
477,280 - HMPREF1058_RS17285 0.41 -3.8
477,281 + HMPREF1058_RS17285 0.41 +4.1
477,281 + HMPREF1058_RS17285 0.41 +1.0
477,281 + HMPREF1058_RS17285 0.41 +1.8
477,301 - HMPREF1058_RS17285 0.43 -0.1
477,301 - HMPREF1058_RS17285 0.43 +0.0
477,355 + HMPREF1058_RS17285 0.50 -0.3
477,403 + HMPREF1058_RS17285 0.56 +1.9
477,404 - HMPREF1058_RS17285 0.56 +0.7
477,512 + HMPREF1058_RS17285 0.69 -0.6
477,515 + HMPREF1058_RS17285 0.70 +2.1
477,609 - HMPREF1058_RS17285 0.81 -0.7
477,624 + HMPREF1058_RS17285 0.83 +1.5
477,625 - HMPREF1058_RS17285 0.83 -1.7
477,732 + -0.1
477,792 + -0.8
477,793 - -0.1
477,814 + +0.9
477,934 + +1.7
477,934 + -1.1
477,935 - -3.4
477,965 + HMPREF1058_RS17280 0.11 +1.2
477,965 + HMPREF1058_RS17280 0.11 +1.1
477,965 + HMPREF1058_RS17280 0.11 +0.2
477,977 + HMPREF1058_RS17280 0.12 -2.9
477,980 - HMPREF1058_RS17280 0.12 -1.3
478,064 + HMPREF1058_RS17280 0.20 +0.7
478,080 - HMPREF1058_RS17280 0.22 -3.2
478,080 - HMPREF1058_RS17280 0.22 -3.4
478,080 - HMPREF1058_RS17280 0.22 -2.2
478,080 - HMPREF1058_RS17280 0.22 -4.3
478,084 + HMPREF1058_RS17280 0.22 +0.2
478,094 - -0.1
478,135 + HMPREF1058_RS17280 0.27 -0.5
478,135 + HMPREF1058_RS17280 0.27 +1.1
478,136 - HMPREF1058_RS17280 0.27 -4.1
478,214 + HMPREF1058_RS17280 0.34 -0.3
478,214 + HMPREF1058_RS17280 0.34 -2.0
478,214 + HMPREF1058_RS17280 0.34 +1.2
478,214 + HMPREF1058_RS17280 0.34 +1.8
478,214 + HMPREF1058_RS17280 0.34 -0.6
478,217 - HMPREF1058_RS17280 0.34 -2.9
478,348 - HMPREF1058_RS17280 0.46 -2.5
478,502 + HMPREF1058_RS17280 0.61 +1.0
478,502 + HMPREF1058_RS17280 0.61 +0.8
478,509 + HMPREF1058_RS17280 0.61 -1.9
478,558 - HMPREF1058_RS17280 0.66 -3.0
478,568 + HMPREF1058_RS17280 0.67 -0.8
478,568 + HMPREF1058_RS17280 0.67 +2.4
478,568 + HMPREF1058_RS17280 0.67 -0.5
478,568 + HMPREF1058_RS17280 0.67 -0.9
478,569 - HMPREF1058_RS17280 0.67 -1.6
478,610 + HMPREF1058_RS17280 0.71 -0.8
478,716 - HMPREF1058_RS17280 0.81 -2.2
478,728 - HMPREF1058_RS17280 0.82 -0.5
478,761 + HMPREF1058_RS17280 0.85 -2.0
478,762 - HMPREF1058_RS17280 0.85 -0.7
478,967 + -1.3
478,971 + +0.3
479,003 - -4.0
479,152 + HMPREF1058_RS17275 0.19 -0.5
479,172 - HMPREF1058_RS17275 0.21 -0.7
479,186 - HMPREF1058_RS17275 0.22 -1.3
479,190 - HMPREF1058_RS17275 0.23 -2.0
479,206 - HMPREF1058_RS17275 0.24 -0.8
479,409 - HMPREF1058_RS17275 0.43 -1.9
479,421 - HMPREF1058_RS17275 0.44 -3.1
479,421 - HMPREF1058_RS17275 0.44 -1.3
479,421 - HMPREF1058_RS17275 0.44 -3.5
479,462 - HMPREF1058_RS17275 0.48 -0.5
479,553 + HMPREF1058_RS17275 0.56 +0.2
479,553 + HMPREF1058_RS17275 0.56 -0.9
479,554 - HMPREF1058_RS17275 0.56 -1.7
479,554 - HMPREF1058_RS17275 0.56 -1.2
479,554 - HMPREF1058_RS17275 0.56 -1.3
479,588 - HMPREF1058_RS17275 0.59 -1.9
479,759 - HMPREF1058_RS17275 0.75 -1.9
479,784 + HMPREF1058_RS17275 0.77 -0.8
479,868 - HMPREF1058_RS17275 0.85 -2.2
479,881 + HMPREF1058_RS17275 0.86 -0.1
479,881 + HMPREF1058_RS17275 0.86 -2.3

Or see this region's nucleotide sequence