Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS17275

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS17280 and HMPREF1058_RS17275 are separated by 20 nucleotidesHMPREF1058_RS17275 and HMPREF1058_RS17270 are separated by 14 nucleotides HMPREF1058_RS17280: HMPREF1058_RS17280 - GDP-mannose 4,6-dehydratase, at 477,846 to 478,925 _RS17280 HMPREF1058_RS17275: HMPREF1058_RS17275 - GDP-L-fucose synthase, at 478,946 to 480,028 _RS17275 HMPREF1058_RS17270: HMPREF1058_RS17270 - mannose-1-phosphate guanylyltransferase, at 480,043 to 481,086 _RS17270 Position (kb) 478 479 480 481Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 477.965 kb on + strand, within HMPREF1058_RS17280at 477.965 kb on + strand, within HMPREF1058_RS17280at 477.965 kb on + strand, within HMPREF1058_RS17280at 477.977 kb on + strand, within HMPREF1058_RS17280at 477.980 kb on - strand, within HMPREF1058_RS17280at 478.064 kb on + strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.080 kb on - strand, within HMPREF1058_RS17280at 478.084 kb on + strand, within HMPREF1058_RS17280at 478.094 kb on - strandat 478.135 kb on + strand, within HMPREF1058_RS17280at 478.135 kb on + strand, within HMPREF1058_RS17280at 478.136 kb on - strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.214 kb on + strand, within HMPREF1058_RS17280at 478.217 kb on - strand, within HMPREF1058_RS17280at 478.348 kb on - strand, within HMPREF1058_RS17280at 478.502 kb on + strand, within HMPREF1058_RS17280at 478.502 kb on + strand, within HMPREF1058_RS17280at 478.509 kb on + strand, within HMPREF1058_RS17280at 478.558 kb on - strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.568 kb on + strand, within HMPREF1058_RS17280at 478.569 kb on - strand, within HMPREF1058_RS17280at 478.610 kb on + strand, within HMPREF1058_RS17280at 478.716 kb on - strand, within HMPREF1058_RS17280at 478.728 kb on - strand, within HMPREF1058_RS17280at 478.761 kb on + strand, within HMPREF1058_RS17280at 478.762 kb on - strand, within HMPREF1058_RS17280at 478.967 kb on + strandat 478.971 kb on + strandat 479.003 kb on - strandat 479.152 kb on + strand, within HMPREF1058_RS17275at 479.172 kb on - strand, within HMPREF1058_RS17275at 479.186 kb on - strand, within HMPREF1058_RS17275at 479.190 kb on - strand, within HMPREF1058_RS17275at 479.206 kb on - strand, within HMPREF1058_RS17275at 479.409 kb on - strand, within HMPREF1058_RS17275at 479.421 kb on - strand, within HMPREF1058_RS17275at 479.421 kb on - strand, within HMPREF1058_RS17275at 479.421 kb on - strand, within HMPREF1058_RS17275at 479.462 kb on - strand, within HMPREF1058_RS17275at 479.553 kb on + strand, within HMPREF1058_RS17275at 479.553 kb on + strand, within HMPREF1058_RS17275at 479.554 kb on - strand, within HMPREF1058_RS17275at 479.554 kb on - strand, within HMPREF1058_RS17275at 479.554 kb on - strand, within HMPREF1058_RS17275at 479.588 kb on - strand, within HMPREF1058_RS17275at 479.759 kb on - strand, within HMPREF1058_RS17275at 479.784 kb on + strand, within HMPREF1058_RS17275at 479.868 kb on - strand, within HMPREF1058_RS17275at 479.881 kb on + strand, within HMPREF1058_RS17275at 479.881 kb on + strand, within HMPREF1058_RS17275at 479.968 kb on - strandat 479.968 kb on - strandat 479.974 kb on - strandat 479.974 kb on - strandat 479.996 kb on + strandat 479.997 kb on - strandat 479.997 kb on - strandat 479.997 kb on - strandat 480.026 kb on + strandat 480.027 kb on - strandat 480.043 kb on - strandat 480.204 kb on + strand, within HMPREF1058_RS17270at 480.204 kb on + strand, within HMPREF1058_RS17270at 480.205 kb on - strand, within HMPREF1058_RS17270at 480.229 kb on + strand, within HMPREF1058_RS17270at 480.230 kb on - strand, within HMPREF1058_RS17270at 480.230 kb on - strand, within HMPREF1058_RS17270at 480.279 kb on - strand, within HMPREF1058_RS17270at 480.279 kb on - strand, within HMPREF1058_RS17270at 480.300 kb on + strand, within HMPREF1058_RS17270at 480.323 kb on - strand, within HMPREF1058_RS17270at 480.464 kb on + strand, within HMPREF1058_RS17270at 480.470 kb on + strand, within HMPREF1058_RS17270at 480.470 kb on + strand, within HMPREF1058_RS17270at 480.471 kb on - strand, within HMPREF1058_RS17270at 480.471 kb on - strand, within HMPREF1058_RS17270at 480.510 kb on + strand, within HMPREF1058_RS17270at 480.510 kb on + strand, within HMPREF1058_RS17270at 480.511 kb on - strand, within HMPREF1058_RS17270at 480.511 kb on - strand, within HMPREF1058_RS17270at 480.512 kb on + strand, within HMPREF1058_RS17270at 480.543 kb on - strand, within HMPREF1058_RS17270at 480.595 kb on + strand, within HMPREF1058_RS17270at 480.656 kb on + strand, within HMPREF1058_RS17270at 480.656 kb on + strand, within HMPREF1058_RS17270at 480.657 kb on - strand, within HMPREF1058_RS17270at 480.750 kb on - strand, within HMPREF1058_RS17270at 480.750 kb on - strand, within HMPREF1058_RS17270at 480.777 kb on + strand, within HMPREF1058_RS17270at 480.778 kb on - strand, within HMPREF1058_RS17270at 480.785 kb on + strand, within HMPREF1058_RS17270at 480.785 kb on + strand, within HMPREF1058_RS17270at 480.786 kb on - strand, within HMPREF1058_RS17270at 480.786 kb on - strand, within HMPREF1058_RS17270at 480.790 kb on + strand, within HMPREF1058_RS17270at 480.957 kb on - strand, within HMPREF1058_RS17270at 480.986 kb on + strandat 481.003 kb on + strandat 481.004 kb on - strandat 481.005 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
remove
477,965 + HMPREF1058_RS17280 0.11 +1.2
477,965 + HMPREF1058_RS17280 0.11 +1.1
477,965 + HMPREF1058_RS17280 0.11 +0.2
477,977 + HMPREF1058_RS17280 0.12 -2.9
477,980 - HMPREF1058_RS17280 0.12 -1.3
478,064 + HMPREF1058_RS17280 0.20 +0.7
478,080 - HMPREF1058_RS17280 0.22 -3.2
478,080 - HMPREF1058_RS17280 0.22 -3.4
478,080 - HMPREF1058_RS17280 0.22 -2.2
478,080 - HMPREF1058_RS17280 0.22 -4.3
478,084 + HMPREF1058_RS17280 0.22 +0.2
478,094 - -0.1
478,135 + HMPREF1058_RS17280 0.27 -0.5
478,135 + HMPREF1058_RS17280 0.27 +1.1
478,136 - HMPREF1058_RS17280 0.27 -4.1
478,214 + HMPREF1058_RS17280 0.34 -0.3
478,214 + HMPREF1058_RS17280 0.34 -2.0
478,214 + HMPREF1058_RS17280 0.34 +1.2
478,214 + HMPREF1058_RS17280 0.34 +1.8
478,214 + HMPREF1058_RS17280 0.34 -0.6
478,217 - HMPREF1058_RS17280 0.34 -2.9
478,348 - HMPREF1058_RS17280 0.46 -2.5
478,502 + HMPREF1058_RS17280 0.61 +1.0
478,502 + HMPREF1058_RS17280 0.61 +0.8
478,509 + HMPREF1058_RS17280 0.61 -1.9
478,558 - HMPREF1058_RS17280 0.66 -3.0
478,568 + HMPREF1058_RS17280 0.67 -0.8
478,568 + HMPREF1058_RS17280 0.67 +2.4
478,568 + HMPREF1058_RS17280 0.67 -0.5
478,568 + HMPREF1058_RS17280 0.67 -0.9
478,569 - HMPREF1058_RS17280 0.67 -1.6
478,610 + HMPREF1058_RS17280 0.71 -0.8
478,716 - HMPREF1058_RS17280 0.81 -2.2
478,728 - HMPREF1058_RS17280 0.82 -0.5
478,761 + HMPREF1058_RS17280 0.85 -2.0
478,762 - HMPREF1058_RS17280 0.85 -0.7
478,967 + -1.3
478,971 + +0.3
479,003 - -4.0
479,152 + HMPREF1058_RS17275 0.19 -0.5
479,172 - HMPREF1058_RS17275 0.21 -0.7
479,186 - HMPREF1058_RS17275 0.22 -1.3
479,190 - HMPREF1058_RS17275 0.23 -2.0
479,206 - HMPREF1058_RS17275 0.24 -0.8
479,409 - HMPREF1058_RS17275 0.43 -1.9
479,421 - HMPREF1058_RS17275 0.44 -3.1
479,421 - HMPREF1058_RS17275 0.44 -1.3
479,421 - HMPREF1058_RS17275 0.44 -3.5
479,462 - HMPREF1058_RS17275 0.48 -0.5
479,553 + HMPREF1058_RS17275 0.56 +0.2
479,553 + HMPREF1058_RS17275 0.56 -0.9
479,554 - HMPREF1058_RS17275 0.56 -1.7
479,554 - HMPREF1058_RS17275 0.56 -1.2
479,554 - HMPREF1058_RS17275 0.56 -1.3
479,588 - HMPREF1058_RS17275 0.59 -1.9
479,759 - HMPREF1058_RS17275 0.75 -1.9
479,784 + HMPREF1058_RS17275 0.77 -0.8
479,868 - HMPREF1058_RS17275 0.85 -2.2
479,881 + HMPREF1058_RS17275 0.86 -0.1
479,881 + HMPREF1058_RS17275 0.86 -2.3
479,968 - -2.2
479,968 - -2.0
479,974 - -2.7
479,974 - -1.4
479,996 + -2.1
479,997 - -0.1
479,997 - -1.2
479,997 - -3.6
480,026 + +0.5
480,027 - +0.1
480,043 - -4.1
480,204 + HMPREF1058_RS17270 0.15 +1.4
480,204 + HMPREF1058_RS17270 0.15 +1.2
480,205 - HMPREF1058_RS17270 0.16 -1.3
480,229 + HMPREF1058_RS17270 0.18 +1.3
480,230 - HMPREF1058_RS17270 0.18 -1.8
480,230 - HMPREF1058_RS17270 0.18 +0.1
480,279 - HMPREF1058_RS17270 0.23 -1.5
480,279 - HMPREF1058_RS17270 0.23 -1.0
480,300 + HMPREF1058_RS17270 0.25 -3.5
480,323 - HMPREF1058_RS17270 0.27 +1.6
480,464 + HMPREF1058_RS17270 0.40 +1.0
480,470 + HMPREF1058_RS17270 0.41 -0.2
480,470 + HMPREF1058_RS17270 0.41 -1.7
480,471 - HMPREF1058_RS17270 0.41 -2.2
480,471 - HMPREF1058_RS17270 0.41 -3.0
480,510 + HMPREF1058_RS17270 0.45 +2.1
480,510 + HMPREF1058_RS17270 0.45 -2.3
480,511 - HMPREF1058_RS17270 0.45 -0.3
480,511 - HMPREF1058_RS17270 0.45 -3.0
480,512 + HMPREF1058_RS17270 0.45 +1.0
480,543 - HMPREF1058_RS17270 0.48 +0.6
480,595 + HMPREF1058_RS17270 0.53 -4.2
480,656 + HMPREF1058_RS17270 0.59 -0.9
480,656 + HMPREF1058_RS17270 0.59 -2.0
480,657 - HMPREF1058_RS17270 0.59 -2.8
480,750 - HMPREF1058_RS17270 0.68 -0.4
480,750 - HMPREF1058_RS17270 0.68 -2.1
480,777 + HMPREF1058_RS17270 0.70 +0.7
480,778 - HMPREF1058_RS17270 0.70 -1.3
480,785 + HMPREF1058_RS17270 0.71 -0.4
480,785 + HMPREF1058_RS17270 0.71 -0.8
480,786 - HMPREF1058_RS17270 0.71 -2.4
480,786 - HMPREF1058_RS17270 0.71 -1.1
480,790 + HMPREF1058_RS17270 0.72 +0.4
480,957 - HMPREF1058_RS17270 0.88 -1.4
480,986 + +0.1
481,003 + +0.1
481,004 - -2.4
481,005 + -0.2

Or see this region's nucleotide sequence