Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16120

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16125 and HMPREF1058_RS16120 are separated by 14 nucleotidesHMPREF1058_RS16120 and HMPREF1058_RS16115 are separated by 37 nucleotidesHMPREF1058_RS16115 and HMPREF1058_RS16110 are separated by 25 nucleotides HMPREF1058_RS16125: HMPREF1058_RS16125 - nucleotide sugar dehydrogenase, at 749,770 to 751,026 _RS16125 HMPREF1058_RS16120: HMPREF1058_RS16120 - tyrosine-protein kinase, at 751,041 to 753,458 _RS16120 HMPREF1058_RS16115: HMPREF1058_RS16115 - polysaccharide export protein, at 753,496 to 754,296 _RS16115 HMPREF1058_RS16110: HMPREF1058_RS16110 - hypothetical protein, at 754,322 to 754,756 _RS16110 Position (kb) 751 752 753 754Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 750.073 kb on - strand, within HMPREF1058_RS16125at 750.093 kb on - strand, within HMPREF1058_RS16125at 750.098 kb on + strand, within HMPREF1058_RS16125at 750.099 kb on - strand, within HMPREF1058_RS16125at 750.099 kb on - strand, within HMPREF1058_RS16125at 750.101 kb on + strand, within HMPREF1058_RS16125at 750.148 kb on - strand, within HMPREF1058_RS16125at 750.193 kb on - strand, within HMPREF1058_RS16125at 750.196 kb on - strand, within HMPREF1058_RS16125at 750.236 kb on + strand, within HMPREF1058_RS16125at 750.266 kb on + strand, within HMPREF1058_RS16125at 750.341 kb on + strand, within HMPREF1058_RS16125at 750.341 kb on + strand, within HMPREF1058_RS16125at 750.341 kb on + strand, within HMPREF1058_RS16125at 750.341 kb on + strand, within HMPREF1058_RS16125at 750.429 kb on + strand, within HMPREF1058_RS16125at 750.562 kb on - strand, within HMPREF1058_RS16125at 750.738 kb on - strand, within HMPREF1058_RS16125at 750.756 kb on - strand, within HMPREF1058_RS16125at 750.796 kb on - strand, within HMPREF1058_RS16125at 750.885 kb on + strand, within HMPREF1058_RS16125at 750.886 kb on - strand, within HMPREF1058_RS16125at 750.886 kb on - strand, within HMPREF1058_RS16125at 750.960 kb on + strandat 751.105 kb on + strandat 751.117 kb on + strandat 751.118 kb on - strandat 751.155 kb on - strandat 751.205 kb on + strandat 751.206 kb on - strandat 751.208 kb on + strandat 751.208 kb on + strandat 751.209 kb on - strandat 751.210 kb on + strandat 751.252 kb on + strandat 751.252 kb on - strandat 751.262 kb on + strandat 751.262 kb on + strandat 751.263 kb on - strandat 751.308 kb on - strand, within HMPREF1058_RS16120at 751.325 kb on + strand, within HMPREF1058_RS16120at 751.395 kb on - strand, within HMPREF1058_RS16120at 751.409 kb on + strand, within HMPREF1058_RS16120at 751.444 kb on - strand, within HMPREF1058_RS16120at 751.479 kb on - strand, within HMPREF1058_RS16120at 751.499 kb on - strand, within HMPREF1058_RS16120at 751.508 kb on + strand, within HMPREF1058_RS16120at 751.508 kb on + strand, within HMPREF1058_RS16120at 751.597 kb on + strand, within HMPREF1058_RS16120at 751.597 kb on + strand, within HMPREF1058_RS16120at 751.598 kb on - strand, within HMPREF1058_RS16120at 751.598 kb on - strand, within HMPREF1058_RS16120at 751.598 kb on - strand, within HMPREF1058_RS16120at 751.598 kb on - strand, within HMPREF1058_RS16120at 751.638 kb on - strand, within HMPREF1058_RS16120at 751.662 kb on - strand, within HMPREF1058_RS16120at 751.739 kb on + strand, within HMPREF1058_RS16120at 751.740 kb on - strand, within HMPREF1058_RS16120at 751.788 kb on - strand, within HMPREF1058_RS16120at 751.792 kb on - strand, within HMPREF1058_RS16120at 751.811 kb on + strand, within HMPREF1058_RS16120at 751.812 kb on - strand, within HMPREF1058_RS16120at 751.856 kb on + strand, within HMPREF1058_RS16120at 751.879 kb on + strand, within HMPREF1058_RS16120at 751.911 kb on + strand, within HMPREF1058_RS16120at 751.932 kb on + strand, within HMPREF1058_RS16120at 752.048 kb on + strand, within HMPREF1058_RS16120at 752.049 kb on - strand, within HMPREF1058_RS16120at 752.049 kb on - strand, within HMPREF1058_RS16120at 752.053 kb on + strand, within HMPREF1058_RS16120at 752.053 kb on + strand, within HMPREF1058_RS16120at 752.087 kb on + strand, within HMPREF1058_RS16120at 752.087 kb on + strand, within HMPREF1058_RS16120at 752.294 kb on + strand, within HMPREF1058_RS16120at 752.317 kb on + strand, within HMPREF1058_RS16120at 752.330 kb on + strand, within HMPREF1058_RS16120at 752.331 kb on - strand, within HMPREF1058_RS16120at 752.579 kb on + strand, within HMPREF1058_RS16120at 752.804 kb on - strand, within HMPREF1058_RS16120at 752.819 kb on + strand, within HMPREF1058_RS16120at 752.898 kb on - strand, within HMPREF1058_RS16120at 752.942 kb on + strand, within HMPREF1058_RS16120at 752.981 kb on - strand, within HMPREF1058_RS16120at 753.059 kb on + strand, within HMPREF1058_RS16120at 753.059 kb on + strand, within HMPREF1058_RS16120at 753.060 kb on - strand, within HMPREF1058_RS16120at 753.060 kb on - strand, within HMPREF1058_RS16120at 753.062 kb on - strand, within HMPREF1058_RS16120at 753.290 kb on - strandat 753.330 kb on - strandat 753.330 kb on - strandat 753.380 kb on + strandat 753.458 kb on + strandat 753.488 kb on + strandat 753.546 kb on + strandat 753.546 kb on + strandat 753.546 kb on + strandat 753.617 kb on + strand, within HMPREF1058_RS16115at 753.618 kb on - strand, within HMPREF1058_RS16115at 753.641 kb on + strand, within HMPREF1058_RS16115at 753.675 kb on + strand, within HMPREF1058_RS16115at 753.759 kb on + strand, within HMPREF1058_RS16115at 753.882 kb on + strand, within HMPREF1058_RS16115at 754.038 kb on + strand, within HMPREF1058_RS16115at 754.039 kb on - strand, within HMPREF1058_RS16115at 754.039 kb on - strand, within HMPREF1058_RS16115at 754.041 kb on + strand, within HMPREF1058_RS16115at 754.127 kb on - strand, within HMPREF1058_RS16115at 754.163 kb on + strand, within HMPREF1058_RS16115at 754.185 kb on - strand, within HMPREF1058_RS16115at 754.214 kb on + strand, within HMPREF1058_RS16115at 754.215 kb on - strand, within HMPREF1058_RS16115at 754.438 kb on + strand, within HMPREF1058_RS16110at 754.439 kb on - strand, within HMPREF1058_RS16110

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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750,073 - HMPREF1058_RS16125 0.24 -3.4
750,093 - HMPREF1058_RS16125 0.26 +0.6
750,098 + HMPREF1058_RS16125 0.26 -0.3
750,099 - HMPREF1058_RS16125 0.26 +0.2
750,099 - HMPREF1058_RS16125 0.26 +0.2
750,101 + HMPREF1058_RS16125 0.26 +1.1
750,148 - HMPREF1058_RS16125 0.30 +1.9
750,193 - HMPREF1058_RS16125 0.34 +1.0
750,196 - HMPREF1058_RS16125 0.34 +2.7
750,236 + HMPREF1058_RS16125 0.37 +0.7
750,266 + HMPREF1058_RS16125 0.39 -0.8
750,341 + HMPREF1058_RS16125 0.45 +1.3
750,341 + HMPREF1058_RS16125 0.45 +0.7
750,341 + HMPREF1058_RS16125 0.45 -2.1
750,341 + HMPREF1058_RS16125 0.45 +1.3
750,429 + HMPREF1058_RS16125 0.52 +0.2
750,562 - HMPREF1058_RS16125 0.63 +0.5
750,738 - HMPREF1058_RS16125 0.77 -2.5
750,756 - HMPREF1058_RS16125 0.78 -0.2
750,796 - HMPREF1058_RS16125 0.82 -1.4
750,885 + HMPREF1058_RS16125 0.89 +0.4
750,886 - HMPREF1058_RS16125 0.89 +2.6
750,886 - HMPREF1058_RS16125 0.89 +1.0
750,960 + -0.4
751,105 + +0.9
751,117 + +1.0
751,118 - +1.4
751,155 - -3.4
751,205 + -1.3
751,206 - +0.8
751,208 + +0.8
751,208 + -0.2
751,209 - -1.9
751,210 + +1.2
751,252 + +0.4
751,252 - -3.0
751,262 + -1.6
751,262 + +1.0
751,263 - -1.3
751,308 - HMPREF1058_RS16120 0.11 +1.5
751,325 + HMPREF1058_RS16120 0.12 +0.2
751,395 - HMPREF1058_RS16120 0.15 -2.9
751,409 + HMPREF1058_RS16120 0.15 -0.3
751,444 - HMPREF1058_RS16120 0.17 +0.4
751,479 - HMPREF1058_RS16120 0.18 -1.9
751,499 - HMPREF1058_RS16120 0.19 -0.6
751,508 + HMPREF1058_RS16120 0.19 +0.1
751,508 + HMPREF1058_RS16120 0.19 +0.6
751,597 + HMPREF1058_RS16120 0.23 -2.5
751,597 + HMPREF1058_RS16120 0.23 +1.6
751,598 - HMPREF1058_RS16120 0.23 +0.0
751,598 - HMPREF1058_RS16120 0.23 +0.6
751,598 - HMPREF1058_RS16120 0.23 -2.3
751,598 - HMPREF1058_RS16120 0.23 -2.0
751,638 - HMPREF1058_RS16120 0.25 -0.6
751,662 - HMPREF1058_RS16120 0.26 +2.1
751,739 + HMPREF1058_RS16120 0.29 -3.2
751,740 - HMPREF1058_RS16120 0.29 -0.3
751,788 - HMPREF1058_RS16120 0.31 -0.7
751,792 - HMPREF1058_RS16120 0.31 -3.5
751,811 + HMPREF1058_RS16120 0.32 +1.2
751,812 - HMPREF1058_RS16120 0.32 -2.2
751,856 + HMPREF1058_RS16120 0.34 +2.2
751,879 + HMPREF1058_RS16120 0.35 +1.3
751,911 + HMPREF1058_RS16120 0.36 +0.3
751,932 + HMPREF1058_RS16120 0.37 +1.8
752,048 + HMPREF1058_RS16120 0.42 -1.4
752,049 - HMPREF1058_RS16120 0.42 +0.7
752,049 - HMPREF1058_RS16120 0.42 -0.0
752,053 + HMPREF1058_RS16120 0.42 +3.3
752,053 + HMPREF1058_RS16120 0.42 -0.2
752,087 + HMPREF1058_RS16120 0.43 -0.7
752,087 + HMPREF1058_RS16120 0.43 +0.5
752,294 + HMPREF1058_RS16120 0.52 -2.5
752,317 + HMPREF1058_RS16120 0.53 -0.9
752,330 + HMPREF1058_RS16120 0.53 -1.9
752,331 - HMPREF1058_RS16120 0.53 +1.2
752,579 + HMPREF1058_RS16120 0.64 -0.3
752,804 - HMPREF1058_RS16120 0.73 -0.2
752,819 + HMPREF1058_RS16120 0.74 -1.8
752,898 - HMPREF1058_RS16120 0.77 +0.4
752,942 + HMPREF1058_RS16120 0.79 -0.6
752,981 - HMPREF1058_RS16120 0.80 -2.1
753,059 + HMPREF1058_RS16120 0.83 +2.1
753,059 + HMPREF1058_RS16120 0.83 +1.8
753,060 - HMPREF1058_RS16120 0.83 +0.3
753,060 - HMPREF1058_RS16120 0.83 +1.9
753,062 - HMPREF1058_RS16120 0.84 -0.6
753,290 - +0.4
753,330 - +0.8
753,330 - +0.5
753,380 + -0.6
753,458 + +0.4
753,488 + -1.5
753,546 + +0.2
753,546 + +0.9
753,546 + +0.3
753,617 + HMPREF1058_RS16115 0.15 +1.4
753,618 - HMPREF1058_RS16115 0.15 -0.6
753,641 + HMPREF1058_RS16115 0.18 +0.0
753,675 + HMPREF1058_RS16115 0.22 +1.1
753,759 + HMPREF1058_RS16115 0.33 -1.2
753,882 + HMPREF1058_RS16115 0.48 +2.0
754,038 + HMPREF1058_RS16115 0.68 -0.4
754,039 - HMPREF1058_RS16115 0.68 -0.9
754,039 - HMPREF1058_RS16115 0.68 +0.4
754,041 + HMPREF1058_RS16115 0.68 -0.9
754,127 - HMPREF1058_RS16115 0.79 -1.2
754,163 + HMPREF1058_RS16115 0.83 -0.9
754,185 - HMPREF1058_RS16115 0.86 +1.1
754,214 + HMPREF1058_RS16115 0.90 -0.2
754,215 - HMPREF1058_RS16115 0.90 -0.9
754,438 + HMPREF1058_RS16110 0.27 +0.7
754,439 - HMPREF1058_RS16110 0.27 +0.1

Or see this region's nucleotide sequence