Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12800 and HMPREF1058_RS12795 are separated by 89 nucleotides HMPREF1058_RS12795 and HMPREF1058_RS12790 are separated by 294 nucleotides
HMPREF1058_RS12800: HMPREF1058_RS12800 - TonB-dependent receptor, at 27,779 to 30,253
_RS12800
HMPREF1058_RS12795: HMPREF1058_RS12795 - CYTH domain-containing protein, at 30,343 to 30,813
_RS12795
HMPREF1058_RS12790: HMPREF1058_RS12790 - peptide chain release factor 2, at 31,108 to 32,223
_RS12790
Position (kb) 30
31 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 29.415 kb on + strand, within HMPREF1058_RS12800 at 29.415 kb on + strand, within HMPREF1058_RS12800 at 29.420 kb on - strand, within HMPREF1058_RS12800 at 29.421 kb on + strand, within HMPREF1058_RS12800 at 29.428 kb on - strand, within HMPREF1058_RS12800 at 29.481 kb on + strand, within HMPREF1058_RS12800 at 29.492 kb on - strand, within HMPREF1058_RS12800 at 29.521 kb on + strand, within HMPREF1058_RS12800 at 29.554 kb on + strand, within HMPREF1058_RS12800 at 29.555 kb on - strand, within HMPREF1058_RS12800 at 29.555 kb on - strand, within HMPREF1058_RS12800 at 29.586 kb on + strand, within HMPREF1058_RS12800 at 29.616 kb on - strand, within HMPREF1058_RS12800 at 29.618 kb on - strand, within HMPREF1058_RS12800 at 29.624 kb on - strand, within HMPREF1058_RS12800 at 29.642 kb on - strand, within HMPREF1058_RS12800 at 29.652 kb on - strand, within HMPREF1058_RS12800 at 29.652 kb on - strand, within HMPREF1058_RS12800 at 29.666 kb on - strand, within HMPREF1058_RS12800 at 29.708 kb on - strand, within HMPREF1058_RS12800 at 29.713 kb on + strand, within HMPREF1058_RS12800 at 29.819 kb on + strand, within HMPREF1058_RS12800 at 29.819 kb on + strand, within HMPREF1058_RS12800 at 29.822 kb on - strand, within HMPREF1058_RS12800 at 29.824 kb on + strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.825 kb on - strand, within HMPREF1058_RS12800 at 29.826 kb on + strand, within HMPREF1058_RS12800 at 29.840 kb on + strand, within HMPREF1058_RS12800 at 29.992 kb on + strand, within HMPREF1058_RS12800 at 30.109 kb on + strand at 30.110 kb on - strand at 30.143 kb on + strand at 30.226 kb on + strand at 30.226 kb on + strand at 30.255 kb on + strand at 30.334 kb on - strand at 30.335 kb on + strand at 30.337 kb on + strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.338 kb on - strand at 30.550 kb on - strand, within HMPREF1058_RS12795 at 30.717 kb on + strand at 30.723 kb on + strand, within HMPREF1058_RS12795 at 30.723 kb on + strand, within HMPREF1058_RS12795 at 30.724 kb on - strand, within HMPREF1058_RS12795 at 30.725 kb on + strand, within HMPREF1058_RS12795 at 30.744 kb on + strand, within HMPREF1058_RS12795 at 30.745 kb on - strand, within HMPREF1058_RS12795 at 30.767 kb on + strand at 30.785 kb on - strand at 30.799 kb on + strand at 30.828 kb on + strand at 30.828 kb on + strand at 30.891 kb on + strand at 30.891 kb on + strand at 30.892 kb on - strand at 30.900 kb on + strand at 30.913 kb on + strand at 30.923 kb on + strand at 30.933 kb on - strand at 30.953 kb on + strand at 30.953 kb on + strand at 30.961 kb on + strand at 30.962 kb on - strand at 30.988 kb on + strand at 31.016 kb on - strand at 31.037 kb on - strand at 31.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 29,415 + HMPREF1058_RS12800 0.66 -1.7 29,415 + HMPREF1058_RS12800 0.66 -0.4 29,420 - HMPREF1058_RS12800 0.66 +1.0 29,421 + HMPREF1058_RS12800 0.66 +0.3 29,428 - HMPREF1058_RS12800 0.67 -0.1 29,481 + HMPREF1058_RS12800 0.69 -1.0 29,492 - HMPREF1058_RS12800 0.69 +0.1 29,521 + HMPREF1058_RS12800 0.70 -2.2 29,554 + HMPREF1058_RS12800 0.72 -3.6 29,555 - HMPREF1058_RS12800 0.72 -3.1 29,555 - HMPREF1058_RS12800 0.72 -2.2 29,586 + HMPREF1058_RS12800 0.73 -0.3 29,616 - HMPREF1058_RS12800 0.74 +0.8 29,618 - HMPREF1058_RS12800 0.74 -1.4 29,624 - HMPREF1058_RS12800 0.75 -1.2 29,642 - HMPREF1058_RS12800 0.75 -2.0 29,652 - HMPREF1058_RS12800 0.76 +0.5 29,652 - HMPREF1058_RS12800 0.76 +0.3 29,666 - HMPREF1058_RS12800 0.76 -0.0 29,708 - HMPREF1058_RS12800 0.78 +0.6 29,713 + HMPREF1058_RS12800 0.78 -1.6 29,819 + HMPREF1058_RS12800 0.82 +1.2 29,819 + HMPREF1058_RS12800 0.82 +0.5 29,822 - HMPREF1058_RS12800 0.83 -0.1 29,824 + HMPREF1058_RS12800 0.83 -1.3 29,825 - HMPREF1058_RS12800 0.83 +1.3 29,825 - HMPREF1058_RS12800 0.83 +0.2 29,825 - HMPREF1058_RS12800 0.83 -2.4 29,825 - HMPREF1058_RS12800 0.83 -2.5 29,825 - HMPREF1058_RS12800 0.83 -0.6 29,826 + HMPREF1058_RS12800 0.83 +0.2 29,840 + HMPREF1058_RS12800 0.83 +1.0 29,992 + HMPREF1058_RS12800 0.89 +0.4 30,109 + -0.6 30,110 - -2.7 30,143 + -0.5 30,226 + +0.2 30,226 + +1.6 30,255 + +0.4 30,334 - +0.6 30,335 + +1.0 30,337 + +1.0 30,338 - -0.1 30,338 - +1.4 30,338 - +1.2 30,550 - HMPREF1058_RS12795 0.44 -4.5 30,717 + +2.6 30,723 + HMPREF1058_RS12795 0.81 -4.2 30,723 + HMPREF1058_RS12795 0.81 -2.4 30,724 - HMPREF1058_RS12795 0.81 -4.0 30,725 + HMPREF1058_RS12795 0.81 -3.2 30,744 + HMPREF1058_RS12795 0.85 -3.7 30,745 - HMPREF1058_RS12795 0.85 -4.2 30,767 + -1.8 30,785 - -3.8 30,799 + -2.1 30,828 + -1.5 30,828 + -3.6 30,891 + -4.2 30,891 + -1.9 30,892 - -0.6 30,900 + -4.3 30,913 + -0.2 30,923 + -3.9 30,933 - -0.4 30,953 + -2.8 30,953 + -1.7 30,961 + -4.1 30,962 - +2.2 30,988 + -2.7 31,016 - +0.4 31,037 - -4.8 31,091 - -1.8
Or see this region's nucleotide sequence