Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11930 and HMPREF1058_RS11925 are separated by 8 nucleotides HMPREF1058_RS11925 and HMPREF1058_RS11920 are separated by 16 nucleotides HMPREF1058_RS11920 and HMPREF1058_RS11915 are separated by 271 nucleotides
HMPREF1058_RS11930: HMPREF1058_RS11930 - CPBP family intramembrane metalloprotease, at 242,333 to 243,163
_RS11930
HMPREF1058_RS11925: HMPREF1058_RS11925 - DUF2975 domain-containing protein, at 243,172 to 243,801
_RS11925
HMPREF1058_RS11920: HMPREF1058_RS11920 - DUF2975 domain-containing protein, at 243,818 to 244,465
_RS11920
HMPREF1058_RS11915: HMPREF1058_RS11915 - helix-turn-helix transcriptional regulator, at 244,737 to 244,949
_RS11915
Position (kb) 243
244 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 242.329 kb on + strand at 242.329 kb on + strand at 242.348 kb on - strand at 242.355 kb on + strand at 242.355 kb on + strand at 242.467 kb on - strand, within HMPREF1058_RS11930 at 242.477 kb on - strand, within HMPREF1058_RS11930 at 242.545 kb on + strand, within HMPREF1058_RS11930 at 242.584 kb on - strand, within HMPREF1058_RS11930 at 242.874 kb on + strand, within HMPREF1058_RS11930 at 242.875 kb on - strand, within HMPREF1058_RS11930 at 242.916 kb on - strand, within HMPREF1058_RS11930 at 242.936 kb on - strand, within HMPREF1058_RS11930 at 242.961 kb on + strand, within HMPREF1058_RS11930 at 242.966 kb on - strand, within HMPREF1058_RS11930 at 242.993 kb on - strand, within HMPREF1058_RS11930 at 243.053 kb on + strand, within HMPREF1058_RS11930 at 243.096 kb on - strand at 243.096 kb on - strand at 243.096 kb on - strand at 243.161 kb on + strand at 243.161 kb on + strand at 243.162 kb on - strand at 243.165 kb on + strand at 243.165 kb on + strand at 243.166 kb on - strand at 243.166 kb on - strand at 243.166 kb on - strand at 243.168 kb on - strand at 243.229 kb on - strand at 243.229 kb on - strand at 243.232 kb on + strand at 243.232 kb on + strand at 243.233 kb on - strand at 243.372 kb on - strand, within HMPREF1058_RS11925 at 243.394 kb on + strand, within HMPREF1058_RS11925 at 243.409 kb on - strand, within HMPREF1058_RS11925 at 243.612 kb on + strand, within HMPREF1058_RS11925 at 243.853 kb on + strand at 243.856 kb on - strand at 243.931 kb on + strand, within HMPREF1058_RS11920 at 243.932 kb on - strand, within HMPREF1058_RS11920 at 243.932 kb on - strand, within HMPREF1058_RS11920 at 243.948 kb on + strand, within HMPREF1058_RS11920 at 243.949 kb on - strand, within HMPREF1058_RS11920 at 243.949 kb on - strand, within HMPREF1058_RS11920 at 243.950 kb on + strand, within HMPREF1058_RS11920 at 243.970 kb on + strand, within HMPREF1058_RS11920 at 243.970 kb on + strand, within HMPREF1058_RS11920 at 244.025 kb on - strand, within HMPREF1058_RS11920 at 244.071 kb on - strand, within HMPREF1058_RS11920 at 244.087 kb on - strand, within HMPREF1058_RS11920 at 244.215 kb on + strand, within HMPREF1058_RS11920 at 244.220 kb on - strand, within HMPREF1058_RS11920 at 244.220 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.257 kb on - strand, within HMPREF1058_RS11920 at 244.285 kb on - strand at 244.358 kb on + strand, within HMPREF1058_RS11920 at 244.359 kb on - strand, within HMPREF1058_RS11920 at 244.544 kb on + strand at 244.556 kb on - strand at 244.569 kb on + strand at 244.607 kb on - strand at 244.651 kb on - strand at 244.661 kb on + strand at 244.661 kb on + strand at 244.746 kb on - strand at 244.762 kb on + strand, within HMPREF1058_RS11915
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 242,329 + -1.8 242,329 + +0.2 242,348 - -3.3 242,355 + -1.9 242,355 + -0.6 242,467 - HMPREF1058_RS11930 0.16 -1.1 242,477 - HMPREF1058_RS11930 0.17 -1.8 242,545 + HMPREF1058_RS11930 0.26 -1.8 242,584 - HMPREF1058_RS11930 0.30 +1.0 242,874 + HMPREF1058_RS11930 0.65 -1.6 242,875 - HMPREF1058_RS11930 0.65 -1.4 242,916 - HMPREF1058_RS11930 0.70 -1.6 242,936 - HMPREF1058_RS11930 0.73 -0.7 242,961 + HMPREF1058_RS11930 0.76 +0.3 242,966 - HMPREF1058_RS11930 0.76 +0.6 242,993 - HMPREF1058_RS11930 0.79 -2.5 243,053 + HMPREF1058_RS11930 0.87 -2.2 243,096 - -2.8 243,096 - -4.2 243,096 - -3.1 243,161 + -0.7 243,161 + -2.2 243,162 - -3.4 243,165 + -2.4 243,165 + -0.6 243,166 - -3.1 243,166 - -4.6 243,166 - -5.4 243,168 - -3.9 243,229 - -5.0 243,229 - -3.3 243,232 + -0.5 243,232 + +2.3 243,233 - -3.0 243,372 - HMPREF1058_RS11925 0.32 -1.2 243,394 + HMPREF1058_RS11925 0.35 -1.4 243,409 - HMPREF1058_RS11925 0.38 -2.0 243,612 + HMPREF1058_RS11925 0.70 -2.2 243,853 + -1.9 243,856 - -2.4 243,931 + HMPREF1058_RS11920 0.17 +0.2 243,932 - HMPREF1058_RS11920 0.18 -4.2 243,932 - HMPREF1058_RS11920 0.18 -0.2 243,948 + HMPREF1058_RS11920 0.20 -1.3 243,949 - HMPREF1058_RS11920 0.20 -0.7 243,949 - HMPREF1058_RS11920 0.20 -1.2 243,950 + HMPREF1058_RS11920 0.20 +1.3 243,970 + HMPREF1058_RS11920 0.23 +1.6 243,970 + HMPREF1058_RS11920 0.23 -1.7 244,025 - HMPREF1058_RS11920 0.32 -0.6 244,071 - HMPREF1058_RS11920 0.39 -2.9 244,087 - HMPREF1058_RS11920 0.42 -2.2 244,215 + HMPREF1058_RS11920 0.61 -0.7 244,220 - HMPREF1058_RS11920 0.62 -4.1 244,220 - HMPREF1058_RS11920 0.62 -1.0 244,257 - HMPREF1058_RS11920 0.68 -6.2 244,257 - HMPREF1058_RS11920 0.68 -3.2 244,257 - HMPREF1058_RS11920 0.68 -4.9 244,285 - -1.1 244,358 + HMPREF1058_RS11920 0.83 -3.2 244,359 - HMPREF1058_RS11920 0.83 -4.5 244,544 + -1.6 244,556 - -2.8 244,569 + +0.5 244,607 - -4.2 244,651 - -3.1 244,661 + -1.4 244,661 + -1.6 244,746 - -5.2 244,762 + HMPREF1058_RS11915 0.12 -1.0
Or see this region's nucleotide sequence