Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11390 and HMPREF1058_RS11385 are separated by 102 nucleotides HMPREF1058_RS11385 and HMPREF1058_RS11380 are separated by 4 nucleotides HMPREF1058_RS11380 and HMPREF1058_RS11375 overlap by 4 nucleotides HMPREF1058_RS11375 and HMPREF1058_RS11370 are separated by 114 nucleotides
HMPREF1058_RS11390: HMPREF1058_RS11390 - ribonuclease P protein component, at 390,726 to 391,118
_RS11390
HMPREF1058_RS11385: HMPREF1058_RS11385 - uroporphyrinogen-III synthase, at 391,221 to 391,970
_RS11385
HMPREF1058_RS11380: HMPREF1058_RS11380 - DUF4271 domain-containing protein, at 391,975 to 392,787
_RS11380
HMPREF1058_RS11375: HMPREF1058_RS11375 - TIGR00730 family Rossman fold protein, at 392,784 to 393,370
_RS11375
HMPREF1058_RS11370: HMPREF1058_RS11370 - methionine adenosyltransferase, at 393,485 to 394,777
_RS11370
Position (kb) 391
392
393 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 391.181 kb on - strand at 391.211 kb on - strand at 391.211 kb on - strand at 392.193 kb on - strand, within HMPREF1058_RS11380 at 392.344 kb on + strand, within HMPREF1058_RS11380 at 392.349 kb on - strand, within HMPREF1058_RS11380 at 392.349 kb on - strand, within HMPREF1058_RS11380 at 392.357 kb on + strand, within HMPREF1058_RS11380 at 392.425 kb on + strand, within HMPREF1058_RS11380 at 392.427 kb on - strand, within HMPREF1058_RS11380 at 392.475 kb on + strand, within HMPREF1058_RS11380 at 392.476 kb on - strand, within HMPREF1058_RS11380 at 392.476 kb on - strand, within HMPREF1058_RS11380 at 392.688 kb on + strand, within HMPREF1058_RS11380 at 392.742 kb on - strand at 392.831 kb on + strand at 392.831 kb on + strand at 392.831 kb on + strand at 392.832 kb on - strand at 392.980 kb on + strand, within HMPREF1058_RS11375 at 393.287 kb on + strand, within HMPREF1058_RS11375 at 393.340 kb on + strand at 393.342 kb on + strand at 393.343 kb on - strand at 393.343 kb on - strand at 393.345 kb on - strand at 393.350 kb on + strand at 393.350 kb on + strand at 393.362 kb on - strand at 393.370 kb on + strand at 393.371 kb on - strand at 393.371 kb on - strand at 393.372 kb on + strand at 393.373 kb on - strand at 393.459 kb on + strand at 393.459 kb on + strand at 393.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 391,181 - +1.6 391,211 - -0.1 391,211 - -2.8 392,193 - HMPREF1058_RS11380 0.27 -1.2 392,344 + HMPREF1058_RS11380 0.45 -4.6 392,349 - HMPREF1058_RS11380 0.46 -4.5 392,349 - HMPREF1058_RS11380 0.46 -1.3 392,357 + HMPREF1058_RS11380 0.47 -5.7 392,425 + HMPREF1058_RS11380 0.55 -4.7 392,427 - HMPREF1058_RS11380 0.56 -2.4 392,475 + HMPREF1058_RS11380 0.62 -2.9 392,476 - HMPREF1058_RS11380 0.62 +0.3 392,476 - HMPREF1058_RS11380 0.62 -4.7 392,688 + HMPREF1058_RS11380 0.88 -3.1 392,742 - -3.5 392,831 + -2.6 392,831 + -2.5 392,831 + -5.5 392,832 - -2.0 392,980 + HMPREF1058_RS11375 0.33 -2.5 393,287 + HMPREF1058_RS11375 0.86 -2.2 393,340 + -1.3 393,342 + -1.5 393,343 - -3.0 393,343 - +0.1 393,345 - +0.7 393,350 + -4.5 393,350 + -0.1 393,362 - +1.0 393,370 + -0.5 393,371 - -2.2 393,371 - -2.9 393,372 + -3.1 393,373 - -1.6 393,459 + +0.1 393,459 + -0.5 393,460 - -2.2
Or see this region's nucleotide sequence