Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10990 and HMPREF1058_RS10985 are separated by 6 nucleotides HMPREF1058_RS10985 and HMPREF1058_RS10980 are separated by 511 nucleotides HMPREF1058_RS10980 and HMPREF1058_RS10975 are separated by 150 nucleotides
HMPREF1058_RS10990: HMPREF1058_RS10990 - S9 family peptidase, at 507,394 to 509,607
_RS10990
HMPREF1058_RS10985: HMPREF1058_RS10985 - RNA methyltransferase, at 509,614 to 511,062
_RS10985
HMPREF1058_RS10980: HMPREF1058_RS10980 - hypothetical protein, at 511,574 to 511,765
_RS10980
HMPREF1058_RS10975: HMPREF1058_RS10975 - serine acetyltransferase, at 511,916 to 512,824
_RS10975
Position (kb) 509
510
511
512 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 508.655 kb on + strand, within HMPREF1058_RS10990 at 508.655 kb on + strand, within HMPREF1058_RS10990 at 508.660 kb on - strand, within HMPREF1058_RS10990 at 508.663 kb on - strand, within HMPREF1058_RS10990 at 508.766 kb on + strand, within HMPREF1058_RS10990 at 508.767 kb on - strand, within HMPREF1058_RS10990 at 508.803 kb on + strand, within HMPREF1058_RS10990 at 508.948 kb on - strand, within HMPREF1058_RS10990 at 508.948 kb on - strand, within HMPREF1058_RS10990 at 508.948 kb on - strand, within HMPREF1058_RS10990 at 508.951 kb on + strand at 508.952 kb on - strand, within HMPREF1058_RS10990 at 508.952 kb on - strand at 509.059 kb on + strand, within HMPREF1058_RS10990 at 509.060 kb on - strand, within HMPREF1058_RS10990 at 509.074 kb on + strand, within HMPREF1058_RS10990 at 509.225 kb on - strand, within HMPREF1058_RS10990 at 509.269 kb on - strand, within HMPREF1058_RS10990 at 509.272 kb on + strand, within HMPREF1058_RS10990 at 509.332 kb on + strand, within HMPREF1058_RS10990 at 509.376 kb on + strand, within HMPREF1058_RS10990 at 509.377 kb on - strand, within HMPREF1058_RS10990 at 509.380 kb on + strand, within HMPREF1058_RS10990 at 509.381 kb on - strand at 509.425 kb on + strand at 509.426 kb on - strand at 509.443 kb on + strand at 509.443 kb on + strand at 509.443 kb on + strand at 509.443 kb on + strand at 509.443 kb on + strand at 509.444 kb on - strand at 509.444 kb on - strand at 509.496 kb on - strand at 509.608 kb on - strand at 509.608 kb on - strand at 509.616 kb on - strand at 509.616 kb on - strand at 509.817 kb on + strand, within HMPREF1058_RS10985 at 509.945 kb on - strand, within HMPREF1058_RS10985 at 509.952 kb on - strand, within HMPREF1058_RS10985 at 509.998 kb on + strand, within HMPREF1058_RS10985 at 510.046 kb on + strand, within HMPREF1058_RS10985 at 510.336 kb on - strand, within HMPREF1058_RS10985 at 510.418 kb on - strand, within HMPREF1058_RS10985 at 510.445 kb on + strand, within HMPREF1058_RS10985 at 510.445 kb on + strand, within HMPREF1058_RS10985 at 510.446 kb on - strand, within HMPREF1058_RS10985 at 510.446 kb on - strand, within HMPREF1058_RS10985 at 510.446 kb on - strand, within HMPREF1058_RS10985 at 510.527 kb on - strand, within HMPREF1058_RS10985 at 510.548 kb on - strand, within HMPREF1058_RS10985 at 510.698 kb on + strand, within HMPREF1058_RS10985 at 510.699 kb on - strand, within HMPREF1058_RS10985 at 510.719 kb on - strand, within HMPREF1058_RS10985 at 510.725 kb on + strand, within HMPREF1058_RS10985 at 510.726 kb on - strand, within HMPREF1058_RS10985 at 510.726 kb on - strand, within HMPREF1058_RS10985 at 510.726 kb on - strand, within HMPREF1058_RS10985 at 510.789 kb on + strand, within HMPREF1058_RS10985 at 510.920 kb on + strand at 510.920 kb on + strand at 510.920 kb on + strand at 510.921 kb on - strand at 510.921 kb on - strand at 510.970 kb on + strand at 510.970 kb on + strand at 510.971 kb on - strand at 511.072 kb on + strand at 511.253 kb on - strand at 511.276 kb on + strand at 511.277 kb on - strand at 511.277 kb on - strand at 511.305 kb on - strand at 511.307 kb on - strand at 511.319 kb on + strand at 511.409 kb on - strand at 511.409 kb on - strand at 511.409 kb on - strand at 511.409 kb on - strand at 511.448 kb on - strand at 511.457 kb on - strand at 511.510 kb on + strand at 511.511 kb on - strand at 511.511 kb on - strand at 511.713 kb on + strand, within HMPREF1058_RS10980 at 511.736 kb on + strand, within HMPREF1058_RS10980 at 511.737 kb on - strand, within HMPREF1058_RS10980 at 511.756 kb on + strand at 511.756 kb on + strand at 511.765 kb on + strand at 511.765 kb on + strand at 511.766 kb on - strand at 511.767 kb on + strand at 511.767 kb on + strand at 511.767 kb on + strand at 511.767 kb on + strand at 511.768 kb on - strand at 511.768 kb on - strand at 511.770 kb on - strand at 511.787 kb on - strand at 511.804 kb on + strand at 511.804 kb on + strand at 511.898 kb on + strand at 511.899 kb on - strand at 511.940 kb on + strand at 511.961 kb on + strand at 511.961 kb on + strand at 512.045 kb on + strand, within HMPREF1058_RS10975 at 512.045 kb on + strand, within HMPREF1058_RS10975 at 512.045 kb on + strand, within HMPREF1058_RS10975 at 512.045 kb on + strand, within HMPREF1058_RS10975 at 512.045 kb on + strand, within HMPREF1058_RS10975 at 512.045 kb on + strand, within HMPREF1058_RS10975
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 508,655 + HMPREF1058_RS10990 0.57 -1.0 508,655 + HMPREF1058_RS10990 0.57 -3.4 508,660 - HMPREF1058_RS10990 0.57 -4.2 508,663 - HMPREF1058_RS10990 0.57 -0.7 508,766 + HMPREF1058_RS10990 0.62 -4.3 508,767 - HMPREF1058_RS10990 0.62 -4.2 508,803 + HMPREF1058_RS10990 0.64 -2.9 508,948 - HMPREF1058_RS10990 0.70 -1.8 508,948 - HMPREF1058_RS10990 0.70 -4.5 508,948 - HMPREF1058_RS10990 0.70 -4.1 508,951 + -0.5 508,952 - HMPREF1058_RS10990 0.70 -1.2 508,952 - -1.1 509,059 + HMPREF1058_RS10990 0.75 -2.3 509,060 - HMPREF1058_RS10990 0.75 -1.9 509,074 + HMPREF1058_RS10990 0.76 -2.9 509,225 - HMPREF1058_RS10990 0.83 -5.6 509,269 - HMPREF1058_RS10990 0.85 -2.2 509,272 + HMPREF1058_RS10990 0.85 -2.3 509,332 + HMPREF1058_RS10990 0.88 -3.3 509,376 + HMPREF1058_RS10990 0.90 -1.9 509,377 - HMPREF1058_RS10990 0.90 -6.8 509,380 + HMPREF1058_RS10990 0.90 -3.3 509,381 - -0.7 509,425 + -2.7 509,426 - -5.6 509,443 + -2.8 509,443 + -3.7 509,443 + -0.8 509,443 + -1.0 509,443 + -6.6 509,444 - -4.3 509,444 - -3.2 509,496 - -3.0 509,608 - -3.6 509,608 - -3.3 509,616 - +0.6 509,616 - -0.2 509,817 + HMPREF1058_RS10985 0.14 -0.9 509,945 - HMPREF1058_RS10985 0.23 -3.3 509,952 - HMPREF1058_RS10985 0.23 -1.4 509,998 + HMPREF1058_RS10985 0.27 -0.8 510,046 + HMPREF1058_RS10985 0.30 -0.1 510,336 - HMPREF1058_RS10985 0.50 -2.0 510,418 - HMPREF1058_RS10985 0.55 -3.2 510,445 + HMPREF1058_RS10985 0.57 -3.7 510,445 + HMPREF1058_RS10985 0.57 -2.1 510,446 - HMPREF1058_RS10985 0.57 -4.5 510,446 - HMPREF1058_RS10985 0.57 -2.9 510,446 - HMPREF1058_RS10985 0.57 -2.2 510,527 - HMPREF1058_RS10985 0.63 -5.2 510,548 - HMPREF1058_RS10985 0.64 -3.9 510,698 + HMPREF1058_RS10985 0.75 -5.0 510,699 - HMPREF1058_RS10985 0.75 -5.8 510,719 - HMPREF1058_RS10985 0.76 -3.0 510,725 + HMPREF1058_RS10985 0.77 -0.3 510,726 - HMPREF1058_RS10985 0.77 -4.5 510,726 - HMPREF1058_RS10985 0.77 -2.5 510,726 - HMPREF1058_RS10985 0.77 -5.7 510,789 + HMPREF1058_RS10985 0.81 -0.8 510,920 + -2.8 510,920 + -3.7 510,920 + -2.5 510,921 - -1.9 510,921 - -7.0 510,970 + +0.7 510,970 + -2.2 510,971 - -0.5 511,072 + -1.9 511,253 - +1.5 511,276 + +0.4 511,277 - +1.4 511,277 - +1.1 511,305 - -0.2 511,307 - -0.2 511,319 + -0.5 511,409 - +0.8 511,409 - -0.9 511,409 - -1.4 511,409 - -1.9 511,448 - +0.2 511,457 - -0.6 511,510 + +0.1 511,511 - +0.3 511,511 - -1.0 511,713 + HMPREF1058_RS10980 0.72 +0.5 511,736 + HMPREF1058_RS10980 0.84 +1.1 511,737 - HMPREF1058_RS10980 0.85 -1.9 511,756 + -3.0 511,756 + +2.2 511,765 + +0.4 511,765 + +1.0 511,766 - +0.3 511,767 + +1.1 511,767 + -2.3 511,767 + +1.5 511,767 + -0.2 511,768 - +1.3 511,768 - +0.1 511,770 - -0.0 511,787 - +0.2 511,804 + +1.4 511,804 + +0.2 511,898 + -0.3 511,899 - +1.5 511,940 + +0.1 511,961 + -0.1 511,961 + -1.1 512,045 + HMPREF1058_RS10975 0.14 -0.3 512,045 + HMPREF1058_RS10975 0.14 -0.7 512,045 + HMPREF1058_RS10975 0.14 -1.2 512,045 + HMPREF1058_RS10975 0.14 +0.1 512,045 + HMPREF1058_RS10975 0.14 +1.4 512,045 + HMPREF1058_RS10975 0.14 +0.7
Or see this region's nucleotide sequence