Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09710 and HMPREF1058_RS09705 overlap by 1 nucleotides HMPREF1058_RS09705 and HMPREF1058_RS09700 are separated by 81 nucleotides
HMPREF1058_RS09710: HMPREF1058_RS09710 - acyltransferase, at 813,340 to 814,365
_RS09710
HMPREF1058_RS09705: HMPREF1058_RS09705 - lipopolysaccharide biosynthesis protein, at 814,365 to 815,801
_RS09705
HMPREF1058_RS09700: HMPREF1058_RS09700 - methionine--tRNA ligase, at 815,883 to 817,925
_RS09700
Position (kb) 814
815
816 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 813.443 kb on - strand, within HMPREF1058_RS09710 at 813.466 kb on - strand, within HMPREF1058_RS09710 at 813.500 kb on - strand, within HMPREF1058_RS09710 at 813.500 kb on - strand, within HMPREF1058_RS09710 at 813.525 kb on - strand, within HMPREF1058_RS09710 at 813.535 kb on + strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.667 kb on + strand, within HMPREF1058_RS09710 at 813.695 kb on - strand, within HMPREF1058_RS09710 at 813.718 kb on - strand, within HMPREF1058_RS09710 at 813.718 kb on - strand, within HMPREF1058_RS09710 at 813.735 kb on + strand, within HMPREF1058_RS09710 at 813.804 kb on - strand, within HMPREF1058_RS09710 at 813.815 kb on + strand, within HMPREF1058_RS09710 at 813.830 kb on + strand, within HMPREF1058_RS09710 at 813.849 kb on + strand, within HMPREF1058_RS09710 at 813.849 kb on + strand, within HMPREF1058_RS09710 at 813.850 kb on - strand, within HMPREF1058_RS09710 at 814.003 kb on + strand at 814.004 kb on - strand, within HMPREF1058_RS09710 at 814.007 kb on + strand, within HMPREF1058_RS09710 at 814.007 kb on + strand, within HMPREF1058_RS09710 at 814.008 kb on - strand, within HMPREF1058_RS09710 at 814.074 kb on + strand, within HMPREF1058_RS09710 at 814.159 kb on - strand, within HMPREF1058_RS09710 at 814.185 kb on - strand, within HMPREF1058_RS09710 at 814.236 kb on + strand, within HMPREF1058_RS09710 at 814.237 kb on - strand, within HMPREF1058_RS09710 at 814.281 kb on + strand at 814.293 kb on + strand at 814.304 kb on - strand at 814.313 kb on - strand at 814.323 kb on + strand at 814.323 kb on + strand at 814.357 kb on - strand at 814.357 kb on - strand at 814.378 kb on - strand at 814.380 kb on - strand at 814.380 kb on - strand at 814.382 kb on - strand at 814.387 kb on - strand at 814.449 kb on + strand at 815.808 kb on - strand at 815.880 kb on - strand at 815.908 kb on - strand at 816.145 kb on - strand, within HMPREF1058_RS09700 at 816.169 kb on - strand, within HMPREF1058_RS09700 at 816.169 kb on - strand, within HMPREF1058_RS09700 at 816.277 kb on - strand, within HMPREF1058_RS09700
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 813,443 - HMPREF1058_RS09710 0.10 -0.1 813,466 - HMPREF1058_RS09710 0.12 +2.2 813,500 - HMPREF1058_RS09710 0.16 +2.4 813,500 - HMPREF1058_RS09710 0.16 +0.0 813,525 - HMPREF1058_RS09710 0.18 +1.4 813,535 + HMPREF1058_RS09710 0.19 +1.5 813,567 - HMPREF1058_RS09710 0.22 -0.0 813,567 - HMPREF1058_RS09710 0.22 +1.9 813,567 - HMPREF1058_RS09710 0.22 +1.4 813,567 - HMPREF1058_RS09710 0.22 -0.0 813,667 + HMPREF1058_RS09710 0.32 -3.5 813,695 - HMPREF1058_RS09710 0.35 +0.2 813,718 - HMPREF1058_RS09710 0.37 -0.5 813,718 - HMPREF1058_RS09710 0.37 -0.6 813,735 + HMPREF1058_RS09710 0.38 +0.4 813,804 - HMPREF1058_RS09710 0.45 -3.0 813,815 + HMPREF1058_RS09710 0.46 -2.2 813,830 + HMPREF1058_RS09710 0.48 -1.4 813,849 + HMPREF1058_RS09710 0.50 -1.3 813,849 + HMPREF1058_RS09710 0.50 -2.2 813,850 - HMPREF1058_RS09710 0.50 -0.7 814,003 + +3.0 814,004 - HMPREF1058_RS09710 0.65 +2.0 814,007 + HMPREF1058_RS09710 0.65 -3.5 814,007 + HMPREF1058_RS09710 0.65 +2.0 814,008 - HMPREF1058_RS09710 0.65 -0.8 814,074 + HMPREF1058_RS09710 0.72 -1.6 814,159 - HMPREF1058_RS09710 0.80 +0.1 814,185 - HMPREF1058_RS09710 0.82 +0.2 814,236 + HMPREF1058_RS09710 0.87 +0.0 814,237 - HMPREF1058_RS09710 0.87 -1.8 814,281 + -0.6 814,293 + -0.5 814,304 - +0.0 814,313 - +0.1 814,323 + +1.8 814,323 + +0.1 814,357 - -0.3 814,357 - +0.3 814,378 - +1.1 814,380 - +0.3 814,380 - -0.6 814,382 - +0.8 814,387 - +0.3 814,449 + -0.7 815,808 - +0.2 815,880 - -2.1 815,908 - +2.5 816,145 - HMPREF1058_RS09700 0.13 -2.0 816,169 - HMPREF1058_RS09700 0.14 -2.8 816,169 - HMPREF1058_RS09700 0.14 -0.6 816,277 - HMPREF1058_RS09700 0.19 +1.5
Or see this region's nucleotide sequence