Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09615 and HMPREF1058_RS09610 are separated by 44 nucleotides HMPREF1058_RS09610 and HMPREF1058_RS09605 are separated by 1 nucleotides HMPREF1058_RS09605 and HMPREF1058_RS09600 overlap by 20 nucleotides
HMPREF1058_RS09615: HMPREF1058_RS09615 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 836,505 to 837,557
_RS09615
HMPREF1058_RS09610: HMPREF1058_RS09610 - peptide chain release factor N(5)-glutamine methyltransferase, at 837,602 to 838,438
_RS09610
HMPREF1058_RS09605: HMPREF1058_RS09605 - RecX family transcriptional regulator, at 838,440 to 838,925
_RS09605
HMPREF1058_RS09600: HMPREF1058_RS09600 - ComF family protein, at 838,906 to 839,601
_RS09600
Position (kb) 837
838
839 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 837.676 kb on + strand at 837.689 kb on - strand, within HMPREF1058_RS09610 at 837.807 kb on - strand, within HMPREF1058_RS09610 at 837.813 kb on - strand, within HMPREF1058_RS09610 at 837.816 kb on + strand, within HMPREF1058_RS09610 at 837.817 kb on - strand, within HMPREF1058_RS09610 at 837.844 kb on + strand, within HMPREF1058_RS09610 at 837.911 kb on - strand, within HMPREF1058_RS09610 at 837.912 kb on + strand, within HMPREF1058_RS09610 at 837.913 kb on - strand, within HMPREF1058_RS09610 at 837.922 kb on + strand, within HMPREF1058_RS09610 at 837.923 kb on - strand, within HMPREF1058_RS09610 at 837.923 kb on - strand, within HMPREF1058_RS09610 at 837.926 kb on + strand, within HMPREF1058_RS09610 at 837.938 kb on - strand, within HMPREF1058_RS09610 at 838.161 kb on - strand, within HMPREF1058_RS09610 at 838.161 kb on - strand, within HMPREF1058_RS09610 at 838.163 kb on - strand, within HMPREF1058_RS09610 at 838.163 kb on - strand, within HMPREF1058_RS09610 at 838.195 kb on + strand, within HMPREF1058_RS09610 at 838.196 kb on - strand, within HMPREF1058_RS09610 at 838.270 kb on - strand, within HMPREF1058_RS09610 at 838.354 kb on + strand, within HMPREF1058_RS09610 at 838.355 kb on - strand at 838.454 kb on - strand at 838.474 kb on - strand at 838.476 kb on - strand at 838.522 kb on + strand, within HMPREF1058_RS09605 at 838.534 kb on + strand, within HMPREF1058_RS09605 at 838.599 kb on + strand, within HMPREF1058_RS09605 at 838.600 kb on - strand, within HMPREF1058_RS09605 at 838.600 kb on - strand, within HMPREF1058_RS09605 at 838.752 kb on + strand, within HMPREF1058_RS09605 at 838.752 kb on + strand, within HMPREF1058_RS09605 at 838.752 kb on + strand, within HMPREF1058_RS09605 at 838.754 kb on + strand, within HMPREF1058_RS09605 at 838.754 kb on + strand, within HMPREF1058_RS09605 at 838.755 kb on - strand, within HMPREF1058_RS09605 at 838.766 kb on - strand, within HMPREF1058_RS09605 at 838.815 kb on + strand, within HMPREF1058_RS09605 at 838.979 kb on + strand, within HMPREF1058_RS09600 at 839.052 kb on + strand, within HMPREF1058_RS09600 at 839.056 kb on - strand, within HMPREF1058_RS09600 at 839.060 kb on + strand, within HMPREF1058_RS09600 at 839.061 kb on - strand, within HMPREF1058_RS09600 at 839.061 kb on - strand, within HMPREF1058_RS09600 at 839.061 kb on - strand, within HMPREF1058_RS09600 at 839.161 kb on + strand, within HMPREF1058_RS09600 at 839.343 kb on + strand, within HMPREF1058_RS09600 at 839.344 kb on - strand, within HMPREF1058_RS09600 at 839.350 kb on - strand, within HMPREF1058_RS09600 at 839.358 kb on + strand, within HMPREF1058_RS09600 at 839.369 kb on + strand at 839.380 kb on + strand, within HMPREF1058_RS09600 at 839.380 kb on + strand, within HMPREF1058_RS09600 at 839.382 kb on + strand, within HMPREF1058_RS09600 at 839.410 kb on + strand, within HMPREF1058_RS09600
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 837,676 + -0.6 837,689 - HMPREF1058_RS09610 0.10 -1.3 837,807 - HMPREF1058_RS09610 0.24 -3.0 837,813 - HMPREF1058_RS09610 0.25 +0.3 837,816 + HMPREF1058_RS09610 0.26 +1.6 837,817 - HMPREF1058_RS09610 0.26 -0.4 837,844 + HMPREF1058_RS09610 0.29 -4.8 837,911 - HMPREF1058_RS09610 0.37 -4.5 837,912 + HMPREF1058_RS09610 0.37 -3.9 837,913 - HMPREF1058_RS09610 0.37 -2.1 837,922 + HMPREF1058_RS09610 0.38 -3.4 837,923 - HMPREF1058_RS09610 0.38 -2.6 837,923 - HMPREF1058_RS09610 0.38 -3.3 837,926 + HMPREF1058_RS09610 0.39 -2.9 837,938 - HMPREF1058_RS09610 0.40 -2.7 838,161 - HMPREF1058_RS09610 0.67 -3.4 838,161 - HMPREF1058_RS09610 0.67 -2.0 838,163 - HMPREF1058_RS09610 0.67 -2.7 838,163 - HMPREF1058_RS09610 0.67 -3.7 838,195 + HMPREF1058_RS09610 0.71 -1.0 838,196 - HMPREF1058_RS09610 0.71 -3.1 838,270 - HMPREF1058_RS09610 0.80 -0.6 838,354 + HMPREF1058_RS09610 0.90 -2.1 838,355 - -2.5 838,454 - -1.4 838,474 - -0.4 838,476 - -2.4 838,522 + HMPREF1058_RS09605 0.17 -3.7 838,534 + HMPREF1058_RS09605 0.19 -1.5 838,599 + HMPREF1058_RS09605 0.33 -3.6 838,600 - HMPREF1058_RS09605 0.33 -0.2 838,600 - HMPREF1058_RS09605 0.33 +1.2 838,752 + HMPREF1058_RS09605 0.64 -1.5 838,752 + HMPREF1058_RS09605 0.64 -0.7 838,752 + HMPREF1058_RS09605 0.64 -0.5 838,754 + HMPREF1058_RS09605 0.65 -1.9 838,754 + HMPREF1058_RS09605 0.65 -0.0 838,755 - HMPREF1058_RS09605 0.65 -0.3 838,766 - HMPREF1058_RS09605 0.67 +2.6 838,815 + HMPREF1058_RS09605 0.77 -1.8 838,979 + HMPREF1058_RS09600 0.10 -4.7 839,052 + HMPREF1058_RS09600 0.21 +2.3 839,056 - HMPREF1058_RS09600 0.22 -0.0 839,060 + HMPREF1058_RS09600 0.22 -0.2 839,061 - HMPREF1058_RS09600 0.22 -1.9 839,061 - HMPREF1058_RS09600 0.22 +1.3 839,061 - HMPREF1058_RS09600 0.22 +0.6 839,161 + HMPREF1058_RS09600 0.37 -2.5 839,343 + HMPREF1058_RS09600 0.63 -3.8 839,344 - HMPREF1058_RS09600 0.63 +2.1 839,350 - HMPREF1058_RS09600 0.64 +0.8 839,358 + HMPREF1058_RS09600 0.65 -0.2 839,369 + -1.1 839,380 + HMPREF1058_RS09600 0.68 -0.6 839,380 + HMPREF1058_RS09600 0.68 -0.3 839,382 + HMPREF1058_RS09600 0.68 -0.2 839,410 + HMPREF1058_RS09600 0.72 -1.6
Or see this region's nucleotide sequence