Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09545

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS09550 and HMPREF1058_RS09545 are separated by 93 nucleotidesHMPREF1058_RS09545 and HMPREF1058_RS09540 are separated by 506 nucleotides HMPREF1058_RS09550: HMPREF1058_RS09550 - PepSY domain-containing protein, at 849,852 to 851,048 _RS09550 HMPREF1058_RS09545: HMPREF1058_RS09545 - magnesium transporter CorA family protein, at 851,142 to 852,065 _RS09545 HMPREF1058_RS09540: HMPREF1058_RS09540 - peroxiredoxin, at 852,572 to 853,138 _RS09540 Position (kb) 851 852 853Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2 3at 850.274 kb on + strand, within HMPREF1058_RS09550at 850.503 kb on + strand, within HMPREF1058_RS09550at 850.503 kb on + strand, within HMPREF1058_RS09550at 850.503 kb on + strand, within HMPREF1058_RS09550at 850.504 kb on - strand, within HMPREF1058_RS09550at 850.689 kb on + strand, within HMPREF1058_RS09550at 850.689 kb on + strand, within HMPREF1058_RS09550at 850.710 kb on + strand, within HMPREF1058_RS09550at 850.751 kb on - strand, within HMPREF1058_RS09550at 850.820 kb on + strand, within HMPREF1058_RS09550at 850.842 kb on - strand, within HMPREF1058_RS09550at 850.862 kb on - strand, within HMPREF1058_RS09550at 850.866 kb on - strand, within HMPREF1058_RS09550at 850.912 kb on + strand, within HMPREF1058_RS09550at 850.913 kb on - strand, within HMPREF1058_RS09550at 850.923 kb on - strand, within HMPREF1058_RS09550at 850.959 kb on - strandat 850.960 kb on + strandat 850.961 kb on - strandat 850.961 kb on - strandat 851.001 kb on + strandat 851.012 kb on - strandat 851.041 kb on + strandat 851.042 kb on - strandat 851.042 kb on - strandat 851.061 kb on + strandat 851.092 kb on - strandat 851.120 kb on + strandat 851.120 kb on + strandat 851.120 kb on + strandat 851.121 kb on - strandat 851.121 kb on - strandat 851.121 kb on - strandat 851.188 kb on - strandat 851.207 kb on + strandat 851.238 kb on + strand, within HMPREF1058_RS09545at 851.239 kb on - strand, within HMPREF1058_RS09545at 851.239 kb on - strand, within HMPREF1058_RS09545at 851.244 kb on + strand, within HMPREF1058_RS09545at 851.244 kb on + strand, within HMPREF1058_RS09545at 851.244 kb on + strand, within HMPREF1058_RS09545at 851.245 kb on - strand, within HMPREF1058_RS09545at 851.245 kb on - strand, within HMPREF1058_RS09545at 851.250 kb on + strand, within HMPREF1058_RS09545at 851.250 kb on + strand, within HMPREF1058_RS09545at 851.251 kb on - strand, within HMPREF1058_RS09545at 851.251 kb on - strandat 851.274 kb on + strand, within HMPREF1058_RS09545at 851.274 kb on + strand, within HMPREF1058_RS09545at 851.275 kb on - strand, within HMPREF1058_RS09545at 851.278 kb on - strand, within HMPREF1058_RS09545at 851.307 kb on - strand, within HMPREF1058_RS09545at 851.384 kb on + strand, within HMPREF1058_RS09545at 851.393 kb on - strand, within HMPREF1058_RS09545at 851.397 kb on - strand, within HMPREF1058_RS09545at 851.397 kb on - strand, within HMPREF1058_RS09545at 851.397 kb on - strand, within HMPREF1058_RS09545at 851.408 kb on + strand, within HMPREF1058_RS09545at 851.410 kb on + strand, within HMPREF1058_RS09545at 851.410 kb on + strand, within HMPREF1058_RS09545at 851.410 kb on + strand, within HMPREF1058_RS09545at 851.429 kb on + strand, within HMPREF1058_RS09545at 851.429 kb on + strand, within HMPREF1058_RS09545at 851.429 kb on + strand, within HMPREF1058_RS09545at 851.433 kb on + strand, within HMPREF1058_RS09545at 851.434 kb on - strand, within HMPREF1058_RS09545at 851.434 kb on - strand, within HMPREF1058_RS09545at 851.434 kb on - strand, within HMPREF1058_RS09545at 851.579 kb on + strandat 851.580 kb on - strand, within HMPREF1058_RS09545at 851.583 kb on + strand, within HMPREF1058_RS09545at 851.583 kb on + strand, within HMPREF1058_RS09545at 851.583 kb on + strand, within HMPREF1058_RS09545at 851.584 kb on - strand, within HMPREF1058_RS09545at 851.616 kb on + strand, within HMPREF1058_RS09545at 851.617 kb on - strand, within HMPREF1058_RS09545at 851.629 kb on - strand, within HMPREF1058_RS09545at 851.629 kb on - strand, within HMPREF1058_RS09545at 851.629 kb on - strand, within HMPREF1058_RS09545at 851.673 kb on + strand, within HMPREF1058_RS09545at 851.717 kb on + strand, within HMPREF1058_RS09545at 851.765 kb on - strand, within HMPREF1058_RS09545at 851.820 kb on - strand, within HMPREF1058_RS09545at 851.820 kb on - strand, within HMPREF1058_RS09545at 851.820 kb on - strand, within HMPREF1058_RS09545at 851.821 kb on + strand, within HMPREF1058_RS09545at 851.822 kb on - strand, within HMPREF1058_RS09545at 851.822 kb on - strand, within HMPREF1058_RS09545at 851.946 kb on + strand, within HMPREF1058_RS09545at 852.089 kb on + strandat 852.090 kb on - strandat 852.138 kb on + strandat 852.138 kb on + strandat 852.141 kb on + strandat 852.142 kb on - strandat 852.142 kb on - strandat 852.236 kb on + strandat 852.255 kb on - strandat 852.319 kb on + strandat 852.351 kb on + strandat 852.379 kb on + strandat 852.403 kb on + strandat 852.404 kb on - strandat 852.468 kb on + strandat 852.477 kb on + strandat 852.477 kb on + strandat 852.649 kb on + strand, within HMPREF1058_RS09540at 852.676 kb on + strand, within HMPREF1058_RS09540at 852.689 kb on + strand, within HMPREF1058_RS09540at 852.712 kb on - strand, within HMPREF1058_RS09540at 852.729 kb on + strand, within HMPREF1058_RS09540at 852.733 kb on + strand, within HMPREF1058_RS09540at 852.734 kb on - strand, within HMPREF1058_RS09540at 852.777 kb on + strand, within HMPREF1058_RS09540at 852.778 kb on - strand, within HMPREF1058_RS09540at 852.778 kb on - strand, within HMPREF1058_RS09540at 852.778 kb on - strand, within HMPREF1058_RS09540at 852.811 kb on + strand, within HMPREF1058_RS09540at 852.937 kb on + strand, within HMPREF1058_RS09540at 853.004 kb on - strand, within HMPREF1058_RS09540at 853.047 kb on + strand, within HMPREF1058_RS09540

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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850,274 + HMPREF1058_RS09550 0.35 -0.9
850,503 + HMPREF1058_RS09550 0.54 -1.7
850,503 + HMPREF1058_RS09550 0.54 +0.0
850,503 + HMPREF1058_RS09550 0.54 -2.1
850,504 - HMPREF1058_RS09550 0.54 +2.1
850,689 + HMPREF1058_RS09550 0.70 -1.6
850,689 + HMPREF1058_RS09550 0.70 -0.0
850,710 + HMPREF1058_RS09550 0.72 -2.2
850,751 - HMPREF1058_RS09550 0.75 +3.4
850,820 + HMPREF1058_RS09550 0.81 +2.4
850,842 - HMPREF1058_RS09550 0.83 -2.2
850,862 - HMPREF1058_RS09550 0.84 -1.9
850,866 - HMPREF1058_RS09550 0.85 +0.8
850,912 + HMPREF1058_RS09550 0.89 -0.6
850,913 - HMPREF1058_RS09550 0.89 +1.1
850,923 - HMPREF1058_RS09550 0.89 -1.1
850,959 - -1.0
850,960 + -1.0
850,961 - +0.1
850,961 - -0.6
851,001 + +1.8
851,012 - +0.2
851,041 + +0.7
851,042 - +3.2
851,042 - +0.5
851,061 + -0.6
851,092 - -3.0
851,120 + +0.8
851,120 + -1.1
851,120 + +1.4
851,121 - -1.0
851,121 - +0.7
851,121 - -1.8
851,188 - -4.0
851,207 + -5.4
851,238 + HMPREF1058_RS09545 0.10 -1.6
851,239 - HMPREF1058_RS09545 0.10 -0.4
851,239 - HMPREF1058_RS09545 0.10 -4.0
851,244 + HMPREF1058_RS09545 0.11 -3.9
851,244 + HMPREF1058_RS09545 0.11 -3.4
851,244 + HMPREF1058_RS09545 0.11 -4.6
851,245 - HMPREF1058_RS09545 0.11 -4.1
851,245 - HMPREF1058_RS09545 0.11 -6.7
851,250 + HMPREF1058_RS09545 0.12 -2.2
851,250 + HMPREF1058_RS09545 0.12 -1.5
851,251 - HMPREF1058_RS09545 0.12 -2.7
851,251 - -0.8
851,274 + HMPREF1058_RS09545 0.14 -2.9
851,274 + HMPREF1058_RS09545 0.14 -5.1
851,275 - HMPREF1058_RS09545 0.14 -4.5
851,278 - HMPREF1058_RS09545 0.15 -3.6
851,307 - HMPREF1058_RS09545 0.18 -4.2
851,384 + HMPREF1058_RS09545 0.26 -2.9
851,393 - HMPREF1058_RS09545 0.27 -4.3
851,397 - HMPREF1058_RS09545 0.28 -4.2
851,397 - HMPREF1058_RS09545 0.28 -6.9
851,397 - HMPREF1058_RS09545 0.28 -6.1
851,408 + HMPREF1058_RS09545 0.29 +0.2
851,410 + HMPREF1058_RS09545 0.29 -5.4
851,410 + HMPREF1058_RS09545 0.29 -4.5
851,410 + HMPREF1058_RS09545 0.29 -4.2
851,429 + HMPREF1058_RS09545 0.31 -4.2
851,429 + HMPREF1058_RS09545 0.31 -3.1
851,429 + HMPREF1058_RS09545 0.31 -5.2
851,433 + HMPREF1058_RS09545 0.31 -1.8
851,434 - HMPREF1058_RS09545 0.32 -5.0
851,434 - HMPREF1058_RS09545 0.32 -2.3
851,434 - HMPREF1058_RS09545 0.32 -5.2
851,579 + +0.6
851,580 - HMPREF1058_RS09545 0.47 -4.3
851,583 + HMPREF1058_RS09545 0.48 -3.8
851,583 + HMPREF1058_RS09545 0.48 -1.3
851,583 + HMPREF1058_RS09545 0.48 -4.4
851,584 - HMPREF1058_RS09545 0.48 -0.4
851,616 + HMPREF1058_RS09545 0.51 -4.3
851,617 - HMPREF1058_RS09545 0.51 -3.4
851,629 - HMPREF1058_RS09545 0.53 -2.6
851,629 - HMPREF1058_RS09545 0.53 -5.6
851,629 - HMPREF1058_RS09545 0.53 -1.3
851,673 + HMPREF1058_RS09545 0.57 -2.7
851,717 + HMPREF1058_RS09545 0.62 -2.8
851,765 - HMPREF1058_RS09545 0.67 -1.3
851,820 - HMPREF1058_RS09545 0.73 -5.4
851,820 - HMPREF1058_RS09545 0.73 -3.8
851,820 - HMPREF1058_RS09545 0.73 -5.2
851,821 + HMPREF1058_RS09545 0.73 -4.1
851,822 - HMPREF1058_RS09545 0.74 -3.4
851,822 - HMPREF1058_RS09545 0.74 -5.5
851,946 + HMPREF1058_RS09545 0.87 -5.0
852,089 + -1.7
852,090 - +0.3
852,138 + -4.0
852,138 + +0.6
852,141 + -4.5
852,142 - -0.2
852,142 - +1.0
852,236 + -4.2
852,255 - +0.4
852,319 + -0.8
852,351 + -1.8
852,379 + -2.3
852,403 + +0.9
852,404 - -0.8
852,468 + +0.4
852,477 + -3.1
852,477 + -0.1
852,649 + HMPREF1058_RS09540 0.14 -2.7
852,676 + HMPREF1058_RS09540 0.18 +0.4
852,689 + HMPREF1058_RS09540 0.21 +0.9
852,712 - HMPREF1058_RS09540 0.25 +0.6
852,729 + HMPREF1058_RS09540 0.28 -2.7
852,733 + HMPREF1058_RS09540 0.28 -1.9
852,734 - HMPREF1058_RS09540 0.29 +1.0
852,777 + HMPREF1058_RS09540 0.36 +1.2
852,778 - HMPREF1058_RS09540 0.36 -3.0
852,778 - HMPREF1058_RS09540 0.36 +0.0
852,778 - HMPREF1058_RS09540 0.36 -1.3
852,811 + HMPREF1058_RS09540 0.42 +0.6
852,937 + HMPREF1058_RS09540 0.64 -3.5
853,004 - HMPREF1058_RS09540 0.76 -0.6
853,047 + HMPREF1058_RS09540 0.84 +0.2

Or see this region's nucleotide sequence