Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08555

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
1,112,619	-		HMPREF1058_RS08560	0.60	-1.5
1,112,636	+		HMPREF1058_RS08560	0.61	-0.1
1,112,636	+		HMPREF1058_RS08560	0.61	-0.5
1,112,657	-		HMPREF1058_RS08560	0.62	-3.3
1,112,691	-		HMPREF1058_RS08560	0.64	-2.7
1,112,814	+		HMPREF1058_RS08560	0.71	-0.6
1,112,914	-		HMPREF1058_RS08560	0.76	+0.2
1,112,914	-		HMPREF1058_RS08560	0.76	-3.1
1,112,917	-		HMPREF1058_RS08560	0.76	-1.7
1,113,052	+		HMPREF1058_RS08560	0.84	-1.9
1,113,144	+		HMPREF1058_RS08560	0.89	-0.5
1,113,147	-		HMPREF1058_RS08560	0.89	-1.1
1,113,150	+		HMPREF1058_RS08560	0.89	-2.8
1,113,151	-		HMPREF1058_RS08560	0.89	-3.6
1,113,160	-		HMPREF1058_RS08560	0.89	-1.7
1,113,309	-				-0.0
1,113,309	-				-1.0
1,113,434	-				-2.2
1,113,446	-				-1.8
1,113,448	-				-3.2
1,113,462	-				-4.0
1,113,469	+				-0.4
1,113,470	-				-2.6
1,113,512	+				+1.5
1,113,513	-				-4.2
1,113,515	+				-1.2
1,113,630	-				-1.0
1,113,701	+				-5.4
1,113,708	-				-4.2
1,113,722	+				-6.7
1,113,722	+				-4.6
1,113,722	+				-3.5
1,113,722	+				-4.9
1,113,723	-				-2.4
1,113,725	-				-1.6
1,113,766	-				-2.4
1,113,788	+				-4.8
1,113,788	+				+1.0
1,113,788	+				-3.2
1,113,822	+				-3.9
1,113,822	+				-4.3
1,113,834	-				-3.9
1,113,845	+		HMPREF1058_RS08555	0.10	-3.7
1,113,846	-		HMPREF1058_RS08555	0.10	-2.6
1,113,847	+		HMPREF1058_RS08555	0.10	-4.5
1,113,848	-		HMPREF1058_RS08555	0.10	-4.5
1,113,848	-		HMPREF1058_RS08555	0.10	-2.8
1,113,849	+		HMPREF1058_RS08555	0.10	-6.5
1,113,850	-		HMPREF1058_RS08555	0.10	-3.4
1,113,854	+		HMPREF1058_RS08555	0.10	-3.3
1,113,855	-		HMPREF1058_RS08555	0.11	-3.4
1,113,855	-		HMPREF1058_RS08555	0.11	-3.1
1,113,855	-		HMPREF1058_RS08555	0.11	-4.2
1,113,855	-		HMPREF1058_RS08555	0.11	-5.2
1,113,856	+		HMPREF1058_RS08555	0.11	-2.8
1,113,857	-		HMPREF1058_RS08555	0.11	-3.3
1,113,857	-		HMPREF1058_RS08555	0.11	-3.7
1,113,857	-		HMPREF1058_RS08555	0.11	-6.3
1,113,865	-		HMPREF1058_RS08555	0.11	-1.6
1,113,913	+		HMPREF1058_RS08555	0.13	-1.6
1,113,945	+		HMPREF1058_RS08555	0.14	-2.2
1,113,953	-		HMPREF1058_RS08555	0.15	-3.5
1,113,981	+		HMPREF1058_RS08555	0.16	-2.3
1,113,983	+		HMPREF1058_RS08555	0.16	-1.7
1,113,983	+		HMPREF1058_RS08555	0.16	-4.2
1,113,984	-		HMPREF1058_RS08555	0.16	-3.4
1,114,032	-		HMPREF1058_RS08555	0.18	-4.5
1,114,044	-		HMPREF1058_RS08555	0.18	-4.3
1,114,128	-		HMPREF1058_RS08555	0.22	-1.0
1,114,154	-		HMPREF1058_RS08555	0.23	-1.7
1,114,155	+		HMPREF1058_RS08555	0.23	-3.4
1,114,155	+		HMPREF1058_RS08555	0.23	-4.3
1,114,208	+		HMPREF1058_RS08555	0.25	-4.9
1,114,252	-		HMPREF1058_RS08555	0.27	-2.2
1,114,253	+		HMPREF1058_RS08555	0.27	-5.9
1,114,253	+		HMPREF1058_RS08555	0.27	-5.3
1,114,254	-		HMPREF1058_RS08555	0.27	-4.3
1,114,259	+		HMPREF1058_RS08555	0.27	-5.7
1,114,259	+		HMPREF1058_RS08555	0.27	-4.2
1,114,260	-		HMPREF1058_RS08555	0.27	-4.2
1,114,264	+		HMPREF1058_RS08555	0.28	-4.8
1,114,265	-		HMPREF1058_RS08555	0.28	-2.3
1,114,266	+		HMPREF1058_RS08555	0.28	-6.5
1,114,298	-		HMPREF1058_RS08555	0.29	-5.8
1,114,341	+		HMPREF1058_RS08555	0.31	-4.7
1,114,341	+		HMPREF1058_RS08555	0.31	-1.8
1,114,380	-		HMPREF1058_RS08555	0.32	-5.4
1,114,389	-		HMPREF1058_RS08555	0.33	-2.4
1,114,396	+		HMPREF1058_RS08555	0.33	-6.0
1,114,402	-		HMPREF1058_RS08555	0.33	-5.1
1,114,423	+		HMPREF1058_RS08555	0.34	-4.2
1,114,429	-		HMPREF1058_RS08555	0.34	-2.9
1,114,451	+		HMPREF1058_RS08555	0.35	-4.4
1,114,455	-		HMPREF1058_RS08555	0.36	-3.7
1,114,469	-		HMPREF1058_RS08555	0.36	-4.2
1,114,564	+		HMPREF1058_RS08555	0.40	-3.5
1,114,581	-		HMPREF1058_RS08555	0.41	-4.2
1,114,608	-		HMPREF1058_RS08555	0.42	-3.3
1,114,635	+		HMPREF1058_RS08555	0.43	-2.7
1,114,647	+		HMPREF1058_RS08555	0.44	-4.1
1,114,647	+		HMPREF1058_RS08555	0.44	-4.0
1,114,648	-		HMPREF1058_RS08555	0.44	-2.4
1,114,715	+		HMPREF1058_RS08555	0.46	-2.9
1,114,742	+		HMPREF1058_RS08555	0.48	-5.9
1,114,746	-		HMPREF1058_RS08555	0.48	-3.9
1,114,761	-		HMPREF1058_RS08555	0.48	-6.1
1,114,855	-		HMPREF1058_RS08555	0.52	-4.6
1,114,892	+		HMPREF1058_RS08555	0.54	-1.8
1,114,900	-		HMPREF1058_RS08555	0.54	-4.1
1,114,912	+		HMPREF1058_RS08555	0.55	-6.3
1,114,912	+		HMPREF1058_RS08555	0.55	-5.7
1,114,913	-		HMPREF1058_RS08555	0.55	-2.7
1,114,989	+		HMPREF1058_RS08555	0.58	-5.6
1,114,990	-		HMPREF1058_RS08555	0.58	-3.1
1,114,991	+		HMPREF1058_RS08555	0.58	-1.8
1,114,991	+		HMPREF1058_RS08555	0.58	-3.3
1,114,992	-		HMPREF1058_RS08555	0.58	-5.2
1,114,992	-		HMPREF1058_RS08555	0.58	+1.0
1,115,021	+		HMPREF1058_RS08555	0.59	-4.2
1,115,025	+		HMPREF1058_RS08555	0.59	-4.3
1,115,025	+		HMPREF1058_RS08555	0.59	-5.9
1,115,025	+		HMPREF1058_RS08555	0.59	-6.5
1,115,052	+		HMPREF1058_RS08555	0.60	-3.1
1,115,095	+		HMPREF1058_RS08555	0.62	-4.4
1,115,125	-		HMPREF1058_RS08555	0.63	-3.4
1,115,145	-		HMPREF1058_RS08555	0.64	-1.7
1,115,154	+		HMPREF1058_RS08555	0.65	-4.6
1,115,269	+		HMPREF1058_RS08555	0.70	-3.8
1,115,274	+		HMPREF1058_RS08555	0.70	-6.4
1,115,274	+		HMPREF1058_RS08555	0.70	-1.8
1,115,275	-		HMPREF1058_RS08555	0.70	-4.9
1,115,275	-		HMPREF1058_RS08555	0.70	-1.6
1,115,285	+		HMPREF1058_RS08555	0.70	-3.6
1,115,286	-		HMPREF1058_RS08555	0.70	-4.7
1,115,348	+		HMPREF1058_RS08555	0.73	-4.4
1,115,360	+		HMPREF1058_RS08555	0.73	-4.1
1,115,360	+		HMPREF1058_RS08555	0.73	-6.3
1,115,397	-		HMPREF1058_RS08555	0.75	-4.0
1,115,408	-		HMPREF1058_RS08555	0.75	-3.0
1,115,423	+		HMPREF1058_RS08555	0.76	-3.3
1,115,442	-		HMPREF1058_RS08555	0.77	-3.5
1,115,442	-		HMPREF1058_RS08555	0.77	-4.0
1,115,481	-		HMPREF1058_RS08555	0.78	-3.3
1,115,636	+		HMPREF1058_RS08555	0.85	-2.4
1,115,705	+				-1.0
1,115,706	-		HMPREF1058_RS08555	0.88	-4.0
1,115,803	-				-2.5
1,115,803	-				-2.4
1,115,807	+				-5.9
1,115,808	-				-4.9
1,115,846	+				-3.7
1,115,850	-				-5.4
1,115,894	+				-4.4
1,115,895	-				-3.9
1,115,895	-				-4.0
1,115,895	-				-3.7
1,115,898	+				-5.1
1,115,898	+				-4.5
1,115,905	+				-4.8
1,116,009	+				-1.0
1,116,152	+				-5.0
1,116,153	-				-5.7
1,116,155	-				-2.6
1,116,155	-				+0.2
1,116,248	+				-0.3
1,116,258	-				-3.6
1,116,348	-				-4.3
1,116,354	-				-3.6
1,116,430	+		HMPREF1058_RS08550	0.13	-2.0
1,116,432	-		HMPREF1058_RS08550	0.13	-4.5
1,116,460	-		HMPREF1058_RS08550	0.17	-1.9
1,116,498	+		HMPREF1058_RS08550	0.22	-0.8
1,116,590	+		HMPREF1058_RS08550	0.34	-1.7
1,116,667	+		HMPREF1058_RS08550	0.44	-2.3
1,116,668	-		HMPREF1058_RS08550	0.44	-4.8
1,116,668	-		HMPREF1058_RS08550	0.44	-3.6
1,116,679	-		HMPREF1058_RS08550	0.45	-3.9
1,116,684	+		HMPREF1058_RS08550	0.46	-4.3
1,116,685	-				+1.0
1,116,685	-		HMPREF1058_RS08550	0.46	-0.6
1,116,731	-		HMPREF1058_RS08550	0.52	-4.3
1,116,733	+		HMPREF1058_RS08550	0.52	-3.5
1,116,734	-		HMPREF1058_RS08550	0.52	-6.0
1,116,734	-		HMPREF1058_RS08550	0.52	-2.9
1,116,734	-		HMPREF1058_RS08550	0.52	-4.0
1,116,734	-		HMPREF1058_RS08550	0.52	-2.7
1,116,736	-		HMPREF1058_RS08550	0.53	-1.5
1,116,777	+		HMPREF1058_RS08550	0.58	-2.1
1,116,778	-		HMPREF1058_RS08550	0.58	-5.6
1,116,831	+		HMPREF1058_RS08550	0.65	-3.1
1,116,933	+				-0.3
1,116,933	+		HMPREF1058_RS08550	0.78	-3.9