Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07280

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07285 and HMPREF1058_RS07280 are separated by 40 nucleotidesHMPREF1058_RS07280 and HMPREF1058_RS07275 are separated by 149 nucleotides HMPREF1058_RS07285: HMPREF1058_RS07285 - ROK family transcriptional regulator, at 271,191 to 272,396 _RS07285 HMPREF1058_RS07280: HMPREF1058_RS07280 - HAD family hydrolase, at 272,437 to 273,171 _RS07280 HMPREF1058_RS07275: HMPREF1058_RS07275 - glucose-6-phosphate isomerase, at 273,321 to 274,664 _RS07275 Position (kb) 272 273 274Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 271.514 kb on - strand, within HMPREF1058_RS07285at 271.626 kb on - strand, within HMPREF1058_RS07285at 271.682 kb on + strand, within HMPREF1058_RS07285at 271.682 kb on + strand, within HMPREF1058_RS07285at 271.683 kb on - strand, within HMPREF1058_RS07285at 271.683 kb on - strand, within HMPREF1058_RS07285at 271.683 kb on - strand, within HMPREF1058_RS07285at 271.686 kb on + strand, within HMPREF1058_RS07285at 271.686 kb on + strand, within HMPREF1058_RS07285at 271.686 kb on + strand, within HMPREF1058_RS07285at 271.686 kb on + strand, within HMPREF1058_RS07285at 271.691 kb on + strand, within HMPREF1058_RS07285at 271.781 kb on + strand, within HMPREF1058_RS07285at 271.782 kb on - strand, within HMPREF1058_RS07285at 271.797 kb on + strand, within HMPREF1058_RS07285at 271.798 kb on - strand, within HMPREF1058_RS07285at 271.798 kb on - strand, within HMPREF1058_RS07285at 271.799 kb on + strand, within HMPREF1058_RS07285at 271.890 kb on + strand, within HMPREF1058_RS07285at 271.928 kb on + strand, within HMPREF1058_RS07285at 271.982 kb on - strand, within HMPREF1058_RS07285at 272.015 kb on + strand, within HMPREF1058_RS07285at 272.016 kb on - strand, within HMPREF1058_RS07285at 272.031 kb on - strand, within HMPREF1058_RS07285at 272.031 kb on - strand, within HMPREF1058_RS07285at 272.033 kb on + strand, within HMPREF1058_RS07285at 272.063 kb on + strand, within HMPREF1058_RS07285at 272.114 kb on - strand, within HMPREF1058_RS07285at 272.117 kb on + strand, within HMPREF1058_RS07285at 272.118 kb on - strand, within HMPREF1058_RS07285at 272.118 kb on - strand, within HMPREF1058_RS07285at 272.136 kb on - strand, within HMPREF1058_RS07285at 272.167 kb on + strand, within HMPREF1058_RS07285at 272.189 kb on + strand, within HMPREF1058_RS07285at 272.190 kb on - strand, within HMPREF1058_RS07285at 272.195 kb on + strand, within HMPREF1058_RS07285at 272.195 kb on + strand, within HMPREF1058_RS07285at 272.195 kb on + strand, within HMPREF1058_RS07285at 272.198 kb on - strand, within HMPREF1058_RS07285at 272.201 kb on + strand, within HMPREF1058_RS07285at 272.250 kb on + strand, within HMPREF1058_RS07285at 272.366 kb on + strandat 272.367 kb on - strandat 272.409 kb on - strandat 272.419 kb on - strandat 272.427 kb on - strandat 272.449 kb on - strandat 272.597 kb on - strand, within HMPREF1058_RS07280at 272.602 kb on + strand, within HMPREF1058_RS07280at 272.617 kb on + strand, within HMPREF1058_RS07280at 272.620 kb on + strand, within HMPREF1058_RS07280at 272.670 kb on - strand, within HMPREF1058_RS07280at 272.734 kb on + strand, within HMPREF1058_RS07280at 272.833 kb on + strand, within HMPREF1058_RS07280at 272.834 kb on - strand, within HMPREF1058_RS07280at 272.953 kb on + strand, within HMPREF1058_RS07280at 272.953 kb on + strandat 272.954 kb on - strand, within HMPREF1058_RS07280at 272.956 kb on + strand, within HMPREF1058_RS07280at 272.956 kb on + strand, within HMPREF1058_RS07280at 272.956 kb on + strand, within HMPREF1058_RS07280at 272.959 kb on - strand, within HMPREF1058_RS07280at 272.967 kb on + strand, within HMPREF1058_RS07280at 272.967 kb on + strand, within HMPREF1058_RS07280at 272.996 kb on + strand, within HMPREF1058_RS07280at 272.996 kb on + strand, within HMPREF1058_RS07280at 272.997 kb on - strand, within HMPREF1058_RS07280at 273.038 kb on - strand, within HMPREF1058_RS07280at 273.042 kb on + strand, within HMPREF1058_RS07280at 273.166 kb on - strandat 273.176 kb on + strandat 273.176 kb on + strandat 273.177 kb on - strandat 273.177 kb on - strandat 273.177 kb on - strandat 273.189 kb on - strandat 273.292 kb on + strandat 273.293 kb on - strandat 273.293 kb on - strandat 273.322 kb on + strandat 273.322 kb on + strandat 273.323 kb on - strandat 273.323 kb on - strandat 273.323 kb on - strandat 273.324 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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271,514 - HMPREF1058_RS07285 0.27 -4.7
271,626 - HMPREF1058_RS07285 0.36 +2.6
271,682 + HMPREF1058_RS07285 0.41 -4.1
271,682 + HMPREF1058_RS07285 0.41 -3.1
271,683 - HMPREF1058_RS07285 0.41 -1.2
271,683 - HMPREF1058_RS07285 0.41 -2.2
271,683 - HMPREF1058_RS07285 0.41 -1.2
271,686 + HMPREF1058_RS07285 0.41 -3.2
271,686 + HMPREF1058_RS07285 0.41 -4.6
271,686 + HMPREF1058_RS07285 0.41 -5.1
271,686 + HMPREF1058_RS07285 0.41 -1.4
271,691 + HMPREF1058_RS07285 0.41 -3.0
271,781 + HMPREF1058_RS07285 0.49 -2.9
271,782 - HMPREF1058_RS07285 0.49 -1.3
271,797 + HMPREF1058_RS07285 0.50 -2.4
271,798 - HMPREF1058_RS07285 0.50 -3.0
271,798 - HMPREF1058_RS07285 0.50 -1.4
271,799 + HMPREF1058_RS07285 0.50 -0.6
271,890 + HMPREF1058_RS07285 0.58 -1.6
271,928 + HMPREF1058_RS07285 0.61 -0.9
271,982 - HMPREF1058_RS07285 0.66 -3.9
272,015 + HMPREF1058_RS07285 0.68 -3.0
272,016 - HMPREF1058_RS07285 0.68 -2.1
272,031 - HMPREF1058_RS07285 0.70 -3.5
272,031 - HMPREF1058_RS07285 0.70 -3.6
272,033 + HMPREF1058_RS07285 0.70 -1.3
272,063 + HMPREF1058_RS07285 0.72 +2.6
272,114 - HMPREF1058_RS07285 0.77 -0.0
272,117 + HMPREF1058_RS07285 0.77 -1.1
272,118 - HMPREF1058_RS07285 0.77 -3.5
272,118 - HMPREF1058_RS07285 0.77 -3.2
272,136 - HMPREF1058_RS07285 0.78 -1.8
272,167 + HMPREF1058_RS07285 0.81 +1.7
272,189 + HMPREF1058_RS07285 0.83 -4.7
272,190 - HMPREF1058_RS07285 0.83 -3.3
272,195 + HMPREF1058_RS07285 0.83 -4.9
272,195 + HMPREF1058_RS07285 0.83 -4.4
272,195 + HMPREF1058_RS07285 0.83 -2.3
272,198 - HMPREF1058_RS07285 0.83 -3.0
272,201 + HMPREF1058_RS07285 0.84 -3.0
272,250 + HMPREF1058_RS07285 0.88 -3.8
272,366 + -3.6
272,367 - -2.3
272,409 - -0.5
272,419 - -2.9
272,427 - -4.2
272,449 - +1.0
272,597 - HMPREF1058_RS07280 0.22 -2.2
272,602 + HMPREF1058_RS07280 0.22 -1.8
272,617 + HMPREF1058_RS07280 0.24 +0.8
272,620 + HMPREF1058_RS07280 0.25 -1.8
272,670 - HMPREF1058_RS07280 0.32 -0.9
272,734 + HMPREF1058_RS07280 0.40 -2.6
272,833 + HMPREF1058_RS07280 0.54 +0.5
272,834 - HMPREF1058_RS07280 0.54 -1.7
272,953 + HMPREF1058_RS07280 0.70 -2.1
272,953 + -0.2
272,954 - HMPREF1058_RS07280 0.70 +2.8
272,956 + HMPREF1058_RS07280 0.71 +0.7
272,956 + HMPREF1058_RS07280 0.71 +0.8
272,956 + HMPREF1058_RS07280 0.71 -0.1
272,959 - HMPREF1058_RS07280 0.71 -0.9
272,967 + HMPREF1058_RS07280 0.72 +1.1
272,967 + HMPREF1058_RS07280 0.72 -0.5
272,996 + HMPREF1058_RS07280 0.76 -0.0
272,996 + HMPREF1058_RS07280 0.76 +0.3
272,997 - HMPREF1058_RS07280 0.76 +0.6
273,038 - HMPREF1058_RS07280 0.82 +0.6
273,042 + HMPREF1058_RS07280 0.82 -3.7
273,166 - -1.6
273,176 + -0.2
273,176 + -0.1
273,177 - -2.7
273,177 - +1.0
273,177 - -0.4
273,189 - +0.5
273,292 + -1.0
273,293 - -0.2
273,293 - -0.6
273,322 + -2.6
273,322 + +0.8
273,323 - +0.6
273,323 - -2.0
273,323 - +2.1
273,324 + +0.6

Or see this region's nucleotide sequence