Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06610

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS06615 and HMPREF1058_RS06610 overlap by 1 nucleotidesHMPREF1058_RS06610 and HMPREF1058_RS06605 are separated by 148 nucleotidesHMPREF1058_RS06605 and HMPREF1058_RS06600 are separated by 68 nucleotides HMPREF1058_RS06615: HMPREF1058_RS06615 - GDP-mannose 4,6-dehydratase, at 436,785 to 437,867 _RS06615 HMPREF1058_RS06610: HMPREF1058_RS06610 - GDP-L-fucose synthase, at 437,867 to 438,943 _RS06610 HMPREF1058_RS06605: HMPREF1058_RS06605 - thiol peroxidase, at 439,092 to 439,595 _RS06605 HMPREF1058_RS06600: HMPREF1058_RS06600 - DedA family protein, at 439,664 to 440,290 _RS06600 Position (kb) 437 438 439Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 436.927 kb on - strand, within HMPREF1058_RS06615at 437.016 kb on - strand, within HMPREF1058_RS06615at 437.048 kb on + strand, within HMPREF1058_RS06615at 437.133 kb on - strand, within HMPREF1058_RS06615at 437.151 kb on - strandat 437.324 kb on + strand, within HMPREF1058_RS06615at 437.493 kb on + strand, within HMPREF1058_RS06615at 437.504 kb on + strand, within HMPREF1058_RS06615at 437.505 kb on - strand, within HMPREF1058_RS06615at 437.562 kb on + strand, within HMPREF1058_RS06615at 437.563 kb on - strand, within HMPREF1058_RS06615at 437.586 kb on - strand, within HMPREF1058_RS06615at 437.697 kb on + strand, within HMPREF1058_RS06615at 437.819 kb on + strandat 437.865 kb on + strandat 437.886 kb on + strandat 437.886 kb on + strandat 437.887 kb on - strandat 437.889 kb on - strandat 437.889 kb on - strandat 437.923 kb on + strandat 437.954 kb on - strandat 437.954 kb on - strandat 438.042 kb on - strand, within HMPREF1058_RS06610at 438.166 kb on - strand, within HMPREF1058_RS06610at 438.260 kb on + strand, within HMPREF1058_RS06610at 438.261 kb on - strand, within HMPREF1058_RS06610at 438.263 kb on - strand, within HMPREF1058_RS06610at 438.275 kb on + strand, within HMPREF1058_RS06610at 438.342 kb on - strand, within HMPREF1058_RS06610at 438.383 kb on - strand, within HMPREF1058_RS06610at 438.484 kb on + strand, within HMPREF1058_RS06610at 438.579 kb on + strand, within HMPREF1058_RS06610at 438.650 kb on + strand, within HMPREF1058_RS06610at 438.651 kb on - strand, within HMPREF1058_RS06610at 438.651 kb on - strand, within HMPREF1058_RS06610at 438.683 kb on + strand, within HMPREF1058_RS06610at 438.684 kb on - strand, within HMPREF1058_RS06610at 438.838 kb on + strandat 438.894 kb on + strandat 438.895 kb on - strandat 438.917 kb on + strandat 438.934 kb on + strandat 438.958 kb on - strandat 439.009 kb on + strandat 439.041 kb on + strandat 439.042 kb on - strandat 439.120 kb on + strandat 439.121 kb on - strandat 439.157 kb on + strand, within HMPREF1058_RS06605at 439.158 kb on - strand, within HMPREF1058_RS06605at 439.160 kb on - strand, within HMPREF1058_RS06605at 439.236 kb on + strand, within HMPREF1058_RS06605at 439.237 kb on - strand, within HMPREF1058_RS06605at 439.237 kb on - strand, within HMPREF1058_RS06605at 439.237 kb on - strand, within HMPREF1058_RS06605at 439.265 kb on + strand, within HMPREF1058_RS06605at 439.265 kb on + strand, within HMPREF1058_RS06605at 439.347 kb on - strand, within HMPREF1058_RS06605at 439.485 kb on - strand, within HMPREF1058_RS06605at 439.487 kb on - strand, within HMPREF1058_RS06605at 439.487 kb on - strand, within HMPREF1058_RS06605at 439.487 kb on - strand, within HMPREF1058_RS06605at 439.487 kb on - strand, within HMPREF1058_RS06605at 439.577 kb on + strandat 439.578 kb on - strandat 439.578 kb on - strandat 439.701 kb on - strandat 439.715 kb on + strandat 439.716 kb on - strandat 439.731 kb on - strand, within HMPREF1058_RS06600at 439.829 kb on - strand, within HMPREF1058_RS06600at 439.848 kb on + strand, within HMPREF1058_RS06600at 439.901 kb on - strand, within HMPREF1058_RS06600

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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436,927 - HMPREF1058_RS06615 0.13 +3.5
437,016 - HMPREF1058_RS06615 0.21 -1.4
437,048 + HMPREF1058_RS06615 0.24 +0.3
437,133 - HMPREF1058_RS06615 0.32 -1.0
437,151 - +2.2
437,324 + HMPREF1058_RS06615 0.50 -2.8
437,493 + HMPREF1058_RS06615 0.65 -1.7
437,504 + HMPREF1058_RS06615 0.66 -1.1
437,505 - HMPREF1058_RS06615 0.66 +0.4
437,562 + HMPREF1058_RS06615 0.72 +0.2
437,563 - HMPREF1058_RS06615 0.72 -0.8
437,586 - HMPREF1058_RS06615 0.74 +2.7
437,697 + HMPREF1058_RS06615 0.84 -2.4
437,819 + -2.9
437,865 + -1.1
437,886 + -1.2
437,886 + +3.5
437,887 - -0.3
437,889 - -1.1
437,889 - -1.4
437,923 + -1.3
437,954 - +1.5
437,954 - +0.6
438,042 - HMPREF1058_RS06610 0.16 -2.5
438,166 - HMPREF1058_RS06610 0.28 +1.2
438,260 + HMPREF1058_RS06610 0.36 +1.7
438,261 - HMPREF1058_RS06610 0.37 +0.3
438,263 - HMPREF1058_RS06610 0.37 -0.4
438,275 + HMPREF1058_RS06610 0.38 +1.9
438,342 - HMPREF1058_RS06610 0.44 -2.3
438,383 - HMPREF1058_RS06610 0.48 +0.6
438,484 + HMPREF1058_RS06610 0.57 +0.6
438,579 + HMPREF1058_RS06610 0.66 +2.0
438,650 + HMPREF1058_RS06610 0.73 -0.0
438,651 - HMPREF1058_RS06610 0.73 +0.0
438,651 - HMPREF1058_RS06610 0.73 -0.2
438,683 + HMPREF1058_RS06610 0.76 +1.0
438,684 - HMPREF1058_RS06610 0.76 -2.9
438,838 + -0.5
438,894 + +0.8
438,895 - -0.2
438,917 + +2.1
438,934 + -0.1
438,958 - -0.5
439,009 + -1.1
439,041 + -0.8
439,042 - -1.4
439,120 + +1.5
439,121 - +1.0
439,157 + HMPREF1058_RS06605 0.13 +0.8
439,158 - HMPREF1058_RS06605 0.13 -0.4
439,160 - HMPREF1058_RS06605 0.13 -0.5
439,236 + HMPREF1058_RS06605 0.29 -0.8
439,237 - HMPREF1058_RS06605 0.29 -2.9
439,237 - HMPREF1058_RS06605 0.29 +0.9
439,237 - HMPREF1058_RS06605 0.29 +0.1
439,265 + HMPREF1058_RS06605 0.34 -1.0
439,265 + HMPREF1058_RS06605 0.34 -0.6
439,347 - HMPREF1058_RS06605 0.51 -3.3
439,485 - HMPREF1058_RS06605 0.78 -0.4
439,487 - HMPREF1058_RS06605 0.78 -0.8
439,487 - HMPREF1058_RS06605 0.78 -0.9
439,487 - HMPREF1058_RS06605 0.78 +1.4
439,487 - HMPREF1058_RS06605 0.78 +2.3
439,577 + -1.7
439,578 - +0.5
439,578 - -3.4
439,701 - +0.3
439,715 + -0.2
439,716 - -1.1
439,731 - HMPREF1058_RS06600 0.11 -3.9
439,829 - HMPREF1058_RS06600 0.26 -0.2
439,848 + HMPREF1058_RS06600 0.29 +0.6
439,901 - HMPREF1058_RS06600 0.38 +0.3

Or see this region's nucleotide sequence