Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS06160

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS06170 and HMPREF1058_RS06165 are separated by 41 nucleotidesHMPREF1058_RS06165 and HMPREF1058_RS06160 overlap by 1 nucleotidesHMPREF1058_RS06160 and HMPREF1058_RS06155 are separated by 264 nucleotidesHMPREF1058_RS06155 and HMPREF1058_RS06150 are separated by 30 nucleotidesHMPREF1058_RS06150 and HMPREF1058_RS06145 are separated by 29 nucleotidesHMPREF1058_RS06145 and HMPREF1058_RS06140 are separated by 257 nucleotides HMPREF1058_RS06170: HMPREF1058_RS06170 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 542,592 to 543,311 _RS06170 HMPREF1058_RS06165: HMPREF1058_RS06165 - imidazole glycerol phosphate synthase subunit HisH, at 543,353 to 543,943 _RS06165 HMPREF1058_RS06160: HMPREF1058_RS06160 - formyltetrahydrofolate deformylase, at 543,943 to 544,800 _RS06160 HMPREF1058_RS06155: HMPREF1058_RS06155 - tRNA-Asp, at 545,065 to 545,138 _RS06155 HMPREF1058_RS06150: HMPREF1058_RS06150 - tRNA-Asp, at 545,169 to 545,242 _RS06150 HMPREF1058_RS06145: HMPREF1058_RS06145 - tRNA-Asp, at 545,272 to 545,345 _RS06145 HMPREF1058_RS06140: HMPREF1058_RS06140 - phage integrase SAM-like domain-containing protein, at 545,603 to 546,238 _RS06140 Position (kb) 543 544 545Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 543.010 kb on - strand, within HMPREF1058_RS06170at 543.228 kb on + strand, within HMPREF1058_RS06170at 543.229 kb on - strand, within HMPREF1058_RS06170at 543.244 kb on + strandat 543.300 kb on + strandat 543.301 kb on - strandat 543.301 kb on - strandat 543.315 kb on + strandat 543.316 kb on - strandat 543.328 kb on - strandat 543.328 kb on - strandat 543.335 kb on + strandat 543.340 kb on - strandat 543.340 kb on - strandat 543.342 kb on - strandat 543.467 kb on - strand, within HMPREF1058_RS06165at 543.467 kb on - strand, within HMPREF1058_RS06165at 543.507 kb on + strand, within HMPREF1058_RS06165at 543.508 kb on - strand, within HMPREF1058_RS06165at 543.519 kb on - strand, within HMPREF1058_RS06165at 543.519 kb on - strand, within HMPREF1058_RS06165at 543.638 kb on + strand, within HMPREF1058_RS06165at 543.638 kb on + strand, within HMPREF1058_RS06165at 543.722 kb on + strand, within HMPREF1058_RS06165at 543.726 kb on - strand, within HMPREF1058_RS06165at 543.737 kb on + strand, within HMPREF1058_RS06165at 543.737 kb on + strand, within HMPREF1058_RS06165at 543.746 kb on - strand, within HMPREF1058_RS06165at 543.839 kb on + strand, within HMPREF1058_RS06165at 543.840 kb on - strand, within HMPREF1058_RS06165at 543.903 kb on + strandat 543.954 kb on + strandat 543.955 kb on - strandat 543.972 kb on - strandat 543.993 kb on + strandat 543.993 kb on + strandat 544.048 kb on + strand, within HMPREF1058_RS06160at 544.087 kb on + strand, within HMPREF1058_RS06160at 544.088 kb on - strand, within HMPREF1058_RS06160at 544.225 kb on + strand, within HMPREF1058_RS06160at 544.282 kb on - strand, within HMPREF1058_RS06160at 544.431 kb on + strand, within HMPREF1058_RS06160at 544.435 kb on + strand, within HMPREF1058_RS06160at 544.435 kb on + strand, within HMPREF1058_RS06160at 544.488 kb on + strand, within HMPREF1058_RS06160at 544.541 kb on - strand, within HMPREF1058_RS06160at 544.586 kb on + strand, within HMPREF1058_RS06160at 544.602 kb on - strand, within HMPREF1058_RS06160at 544.639 kb on + strand, within HMPREF1058_RS06160at 544.689 kb on - strand, within HMPREF1058_RS06160at 544.726 kb on - strandat 544.795 kb on - strandat 545.091 kb on - strand, within HMPREF1058_RS06155at 545.280 kb on - strand, within HMPREF1058_RS06145at 545.393 kb on + strandat 545.445 kb on + strandat 545.446 kb on - strandat 545.484 kb on - strandat 545.485 kb on + strandat 545.554 kb on - strandat 545.574 kb on - strandat 545.588 kb on - strandat 545.623 kb on - strandat 545.623 kb on - strandat 545.792 kb on + strand, within HMPREF1058_RS06140at 545.792 kb on + strand, within HMPREF1058_RS06140at 545.794 kb on + strand, within HMPREF1058_RS06140at 545.795 kb on - strand, within HMPREF1058_RS06140

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
remove
543,010 - HMPREF1058_RS06170 0.58 -3.8
543,228 + HMPREF1058_RS06170 0.88 -1.4
543,229 - HMPREF1058_RS06170 0.88 -2.7
543,244 + -3.0
543,300 + -3.0
543,301 - -3.2
543,301 - -3.4
543,315 + -2.0
543,316 - -2.8
543,328 - -0.4
543,328 - -1.1
543,335 + -2.7
543,340 - +0.5
543,340 - -1.0
543,342 - -0.6
543,467 - HMPREF1058_RS06165 0.19 -2.5
543,467 - HMPREF1058_RS06165 0.19 -3.6
543,507 + HMPREF1058_RS06165 0.26 -0.2
543,508 - HMPREF1058_RS06165 0.26 -5.2
543,519 - HMPREF1058_RS06165 0.28 -2.7
543,519 - HMPREF1058_RS06165 0.28 -3.7
543,638 + HMPREF1058_RS06165 0.48 -4.1
543,638 + HMPREF1058_RS06165 0.48 -2.1
543,722 + HMPREF1058_RS06165 0.62 -2.5
543,726 - HMPREF1058_RS06165 0.63 -3.0
543,737 + HMPREF1058_RS06165 0.65 -3.0
543,737 + HMPREF1058_RS06165 0.65 -2.7
543,746 - HMPREF1058_RS06165 0.66 -3.5
543,839 + HMPREF1058_RS06165 0.82 -1.3
543,840 - HMPREF1058_RS06165 0.82 -2.0
543,903 + -2.6
543,954 + -5.3
543,955 - -0.7
543,972 - +0.3
543,993 + -1.4
543,993 + -5.1
544,048 + HMPREF1058_RS06160 0.12 -2.5
544,087 + HMPREF1058_RS06160 0.17 -2.0
544,088 - HMPREF1058_RS06160 0.17 -3.7
544,225 + HMPREF1058_RS06160 0.33 -1.7
544,282 - HMPREF1058_RS06160 0.40 -1.3
544,431 + HMPREF1058_RS06160 0.57 -3.5
544,435 + HMPREF1058_RS06160 0.57 -3.8
544,435 + HMPREF1058_RS06160 0.57 -5.0
544,488 + HMPREF1058_RS06160 0.64 -2.2
544,541 - HMPREF1058_RS06160 0.70 -1.8
544,586 + HMPREF1058_RS06160 0.75 -5.3
544,602 - HMPREF1058_RS06160 0.77 -2.6
544,639 + HMPREF1058_RS06160 0.81 -1.5
544,689 - HMPREF1058_RS06160 0.87 -3.1
544,726 - -1.7
544,795 - -4.0
545,091 - HMPREF1058_RS06155 0.35 +2.8
545,280 - HMPREF1058_RS06145 0.11 -2.4
545,393 + -0.2
545,445 + -0.2
545,446 - +0.3
545,484 - -0.6
545,485 + -1.6
545,554 - -0.5
545,574 - -2.1
545,588 - +0.9
545,623 - +0.9
545,623 - +0.2
545,792 + HMPREF1058_RS06140 0.30 +0.8
545,792 + HMPREF1058_RS06140 0.30 -0.5
545,794 + HMPREF1058_RS06140 0.30 +0.1
545,795 - HMPREF1058_RS06140 0.30 -1.5

Or see this region's nucleotide sequence