Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03375

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03380 and HMPREF1058_RS03375 are separated by 17 nucleotidesHMPREF1058_RS03375 and HMPREF1058_RS03370 are separated by 40 nucleotides HMPREF1058_RS03380: HMPREF1058_RS03380 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 291,856 to 292,965 _RS03380 HMPREF1058_RS03375: HMPREF1058_RS03375 - lipopolysaccharide biosynthesis protein, at 292,983 to 294,416 _RS03375 HMPREF1058_RS03370: HMPREF1058_RS03370 - transcriptional regulator, at 294,457 to 295,290 _RS03370 Position (kb) 292 293 294 295Strain fitness (log2 ratio) -2 -1 0 1 2 3at 292.010 kb on - strand, within HMPREF1058_RS03380at 292.010 kb on - strand, within HMPREF1058_RS03380at 292.025 kb on + strand, within HMPREF1058_RS03380at 292.025 kb on + strand, within HMPREF1058_RS03380at 292.088 kb on + strand, within HMPREF1058_RS03380at 292.118 kb on + strand, within HMPREF1058_RS03380at 292.199 kb on - strand, within HMPREF1058_RS03380at 292.350 kb on + strand, within HMPREF1058_RS03380at 292.401 kb on + strand, within HMPREF1058_RS03380at 292.401 kb on + strand, within HMPREF1058_RS03380at 292.401 kb on + strand, within HMPREF1058_RS03380at 292.406 kb on + strand, within HMPREF1058_RS03380at 292.407 kb on - strand, within HMPREF1058_RS03380at 292.407 kb on - strand, within HMPREF1058_RS03380at 292.441 kb on - strand, within HMPREF1058_RS03380at 292.503 kb on - strand, within HMPREF1058_RS03380at 292.520 kb on + strand, within HMPREF1058_RS03380at 292.521 kb on - strand, within HMPREF1058_RS03380at 292.571 kb on - strand, within HMPREF1058_RS03380at 292.639 kb on - strand, within HMPREF1058_RS03380at 292.803 kb on + strand, within HMPREF1058_RS03380at 293.054 kb on - strandat 293.095 kb on + strandat 293.190 kb on - strand, within HMPREF1058_RS03375at 293.202 kb on + strand, within HMPREF1058_RS03375at 293.333 kb on + strand, within HMPREF1058_RS03375at 293.678 kb on + strand, within HMPREF1058_RS03375at 293.679 kb on - strand, within HMPREF1058_RS03375at 293.679 kb on - strand, within HMPREF1058_RS03375at 293.680 kb on + strand, within HMPREF1058_RS03375at 293.680 kb on + strand, within HMPREF1058_RS03375at 293.729 kb on - strand, within HMPREF1058_RS03375at 293.729 kb on - strand, within HMPREF1058_RS03375at 293.732 kb on + strand, within HMPREF1058_RS03375at 293.732 kb on + strand, within HMPREF1058_RS03375at 293.741 kb on - strand, within HMPREF1058_RS03375at 293.815 kb on + strand, within HMPREF1058_RS03375at 293.854 kb on - strand, within HMPREF1058_RS03375at 293.893 kb on - strand, within HMPREF1058_RS03375at 293.929 kb on - strand, within HMPREF1058_RS03375at 294.123 kb on - strand, within HMPREF1058_RS03375at 294.125 kb on - strand, within HMPREF1058_RS03375at 294.125 kb on - strand, within HMPREF1058_RS03375at 294.157 kb on - strand, within HMPREF1058_RS03375at 294.167 kb on - strand, within HMPREF1058_RS03375at 294.176 kb on + strand, within HMPREF1058_RS03375at 294.265 kb on - strand, within HMPREF1058_RS03375at 294.433 kb on + strandat 294.444 kb on + strandat 294.444 kb on + strandat 294.445 kb on - strandat 294.446 kb on + strandat 294.446 kb on + strandat 294.446 kb on + strandat 294.449 kb on + strandat 294.454 kb on - strandat 294.492 kb on - strandat 294.510 kb on + strandat 294.657 kb on - strand, within HMPREF1058_RS03370at 294.678 kb on - strand, within HMPREF1058_RS03370at 294.729 kb on + strand, within HMPREF1058_RS03370at 294.729 kb on + strand, within HMPREF1058_RS03370at 294.731 kb on + strand, within HMPREF1058_RS03370at 294.732 kb on - strand, within HMPREF1058_RS03370at 294.921 kb on - strand, within HMPREF1058_RS03370at 294.930 kb on + strand, within HMPREF1058_RS03370at 294.933 kb on + strand, within HMPREF1058_RS03370at 294.934 kb on - strand, within HMPREF1058_RS03370at 294.936 kb on - strand, within HMPREF1058_RS03370at 295.070 kb on + strand, within HMPREF1058_RS03370at 295.071 kb on - strandat 295.071 kb on - strandat 295.071 kb on - strand, within HMPREF1058_RS03370at 295.104 kb on - strand, within HMPREF1058_RS03370at 295.244 kb on + strandat 295.376 kb on + strandat 295.394 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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292,010 - HMPREF1058_RS03380 0.14 +1.2
292,010 - HMPREF1058_RS03380 0.14 +1.8
292,025 + HMPREF1058_RS03380 0.15 +1.0
292,025 + HMPREF1058_RS03380 0.15 +3.3
292,088 + HMPREF1058_RS03380 0.21 +1.1
292,118 + HMPREF1058_RS03380 0.24 +0.4
292,199 - HMPREF1058_RS03380 0.31 +1.7
292,350 + HMPREF1058_RS03380 0.45 -0.7
292,401 + HMPREF1058_RS03380 0.49 -0.2
292,401 + HMPREF1058_RS03380 0.49 -0.6
292,401 + HMPREF1058_RS03380 0.49 +0.2
292,406 + HMPREF1058_RS03380 0.50 +0.4
292,407 - HMPREF1058_RS03380 0.50 +0.0
292,407 - HMPREF1058_RS03380 0.50 +1.8
292,441 - HMPREF1058_RS03380 0.53 -0.6
292,503 - HMPREF1058_RS03380 0.58 -1.9
292,520 + HMPREF1058_RS03380 0.60 +0.4
292,521 - HMPREF1058_RS03380 0.60 +0.9
292,571 - HMPREF1058_RS03380 0.64 +0.4
292,639 - HMPREF1058_RS03380 0.71 -2.1
292,803 + HMPREF1058_RS03380 0.85 -1.6
293,054 - +0.2
293,095 + -1.7
293,190 - HMPREF1058_RS03375 0.14 -1.2
293,202 + HMPREF1058_RS03375 0.15 +1.0
293,333 + HMPREF1058_RS03375 0.24 +1.3
293,678 + HMPREF1058_RS03375 0.48 +1.5
293,679 - HMPREF1058_RS03375 0.49 -1.0
293,679 - HMPREF1058_RS03375 0.49 -0.0
293,680 + HMPREF1058_RS03375 0.49 -0.7
293,680 + HMPREF1058_RS03375 0.49 -1.6
293,729 - HMPREF1058_RS03375 0.52 +0.2
293,729 - HMPREF1058_RS03375 0.52 +1.3
293,732 + HMPREF1058_RS03375 0.52 -1.2
293,732 + HMPREF1058_RS03375 0.52 -0.8
293,741 - HMPREF1058_RS03375 0.53 -1.4
293,815 + HMPREF1058_RS03375 0.58 +3.4
293,854 - HMPREF1058_RS03375 0.61 -1.6
293,893 - HMPREF1058_RS03375 0.63 -2.6
293,929 - HMPREF1058_RS03375 0.66 -2.0
294,123 - HMPREF1058_RS03375 0.79 -0.4
294,125 - HMPREF1058_RS03375 0.80 +0.2
294,125 - HMPREF1058_RS03375 0.80 -2.5
294,157 - HMPREF1058_RS03375 0.82 +0.3
294,167 - HMPREF1058_RS03375 0.83 +0.9
294,176 + HMPREF1058_RS03375 0.83 -0.0
294,265 - HMPREF1058_RS03375 0.89 +2.1
294,433 + -0.3
294,444 + +1.4
294,444 + -0.2
294,445 - -0.2
294,446 + -0.6
294,446 + -0.7
294,446 + -1.9
294,449 + +2.9
294,454 - +0.3
294,492 - +0.4
294,510 + -2.7
294,657 - HMPREF1058_RS03370 0.24 -0.3
294,678 - HMPREF1058_RS03370 0.26 -0.9
294,729 + HMPREF1058_RS03370 0.33 -1.6
294,729 + HMPREF1058_RS03370 0.33 -0.4
294,731 + HMPREF1058_RS03370 0.33 +0.4
294,732 - HMPREF1058_RS03370 0.33 +0.8
294,921 - HMPREF1058_RS03370 0.56 -1.2
294,930 + HMPREF1058_RS03370 0.57 -2.6
294,933 + HMPREF1058_RS03370 0.57 -2.1
294,934 - HMPREF1058_RS03370 0.57 +0.5
294,936 - HMPREF1058_RS03370 0.57 +1.4
295,070 + HMPREF1058_RS03370 0.74 -1.9
295,071 - -0.0
295,071 - -0.2
295,071 - HMPREF1058_RS03370 0.74 -1.4
295,104 - HMPREF1058_RS03370 0.78 -2.5
295,244 + -1.2
295,376 + +1.3
295,394 - -1.0

Or see this region's nucleotide sequence