Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03265

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03275 and HMPREF1058_RS03270 overlap by 1 nucleotidesHMPREF1058_RS03270 and HMPREF1058_RS03265 are separated by 85 nucleotidesHMPREF1058_RS03265 and HMPREF1058_RS03260 are separated by 78 nucleotidesHMPREF1058_RS03260 and HMPREF1058_RS03255 are separated by 112 nucleotides HMPREF1058_RS03275: HMPREF1058_RS03275 - hypothetical protein, at 316,962 to 317,477 _RS03275 HMPREF1058_RS03270: HMPREF1058_RS03270 - flavodoxin family protein, at 317,477 to 318,049 _RS03270 HMPREF1058_RS03265: HMPREF1058_RS03265 - 2-iminoacetate synthase ThiH, at 318,135 to 319,265 _RS03265 HMPREF1058_RS03260: HMPREF1058_RS03260 - HesA/MoeB/ThiF family protein, at 319,344 to 320,036 _RS03260 HMPREF1058_RS03255: HMPREF1058_RS03255 - glutathionylspermidine synthase family protein, at 320,149 to 321,273 _RS03255 Position (kb) 318 319 320Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 317.350 kb on - strand, within HMPREF1058_RS03275at 317.421 kb on + strand, within HMPREF1058_RS03275at 317.425 kb on - strand, within HMPREF1058_RS03275at 317.476 kb on - strandat 317.484 kb on + strandat 317.601 kb on - strand, within HMPREF1058_RS03270at 317.694 kb on + strand, within HMPREF1058_RS03270at 317.764 kb on - strand, within HMPREF1058_RS03270at 317.884 kb on + strand, within HMPREF1058_RS03270at 317.914 kb on - strand, within HMPREF1058_RS03270at 318.033 kb on + strandat 318.084 kb on + strandat 318.094 kb on + strandat 318.095 kb on - strandat 318.119 kb on + strandat 318.367 kb on - strand, within HMPREF1058_RS03265at 318.367 kb on - strand, within HMPREF1058_RS03265at 318.368 kb on + strand, within HMPREF1058_RS03265at 318.399 kb on + strand, within HMPREF1058_RS03265at 318.434 kb on + strand, within HMPREF1058_RS03265at 318.469 kb on - strand, within HMPREF1058_RS03265at 318.550 kb on - strand, within HMPREF1058_RS03265at 318.601 kb on + strand, within HMPREF1058_RS03265at 318.607 kb on + strand, within HMPREF1058_RS03265at 318.631 kb on - strand, within HMPREF1058_RS03265at 318.685 kb on - strand, within HMPREF1058_RS03265at 318.701 kb on + strand, within HMPREF1058_RS03265at 318.702 kb on - strand, within HMPREF1058_RS03265at 318.706 kb on + strand, within HMPREF1058_RS03265at 318.706 kb on + strand, within HMPREF1058_RS03265at 318.707 kb on - strand, within HMPREF1058_RS03265at 318.707 kb on - strand, within HMPREF1058_RS03265at 318.708 kb on + strand, within HMPREF1058_RS03265at 318.802 kb on + strand, within HMPREF1058_RS03265at 318.802 kb on + strand, within HMPREF1058_RS03265at 318.856 kb on + strand, within HMPREF1058_RS03265at 318.892 kb on - strand, within HMPREF1058_RS03265at 318.892 kb on - strand, within HMPREF1058_RS03265at 319.012 kb on + strand, within HMPREF1058_RS03265at 319.016 kb on + strand, within HMPREF1058_RS03265at 319.023 kb on + strand, within HMPREF1058_RS03265at 319.069 kb on + strand, within HMPREF1058_RS03265at 319.119 kb on + strand, within HMPREF1058_RS03265at 319.119 kb on + strand, within HMPREF1058_RS03265at 319.120 kb on - strand, within HMPREF1058_RS03265at 319.120 kb on - strand, within HMPREF1058_RS03265at 319.120 kb on - strand, within HMPREF1058_RS03265at 319.121 kb on + strand, within HMPREF1058_RS03265at 319.121 kb on + strand, within HMPREF1058_RS03265at 319.121 kb on + strand, within HMPREF1058_RS03265at 319.122 kb on - strand, within HMPREF1058_RS03265at 319.167 kb on - strandat 319.259 kb on - strandat 319.263 kb on + strandat 319.298 kb on + strandat 319.300 kb on + strandat 319.300 kb on + strandat 319.301 kb on - strandat 319.424 kb on + strand, within HMPREF1058_RS03260at 319.425 kb on - strand, within HMPREF1058_RS03260at 319.483 kb on + strand, within HMPREF1058_RS03260at 319.516 kb on + strand, within HMPREF1058_RS03260at 319.621 kb on + strand, within HMPREF1058_RS03260at 319.683 kb on + strand, within HMPREF1058_RS03260at 319.696 kb on + strand, within HMPREF1058_RS03260at 319.697 kb on - strandat 319.730 kb on + strand, within HMPREF1058_RS03260at 319.731 kb on - strand, within HMPREF1058_RS03260at 319.739 kb on + strand, within HMPREF1058_RS03260at 319.740 kb on - strand, within HMPREF1058_RS03260at 319.768 kb on + strand, within HMPREF1058_RS03260at 319.768 kb on + strand, within HMPREF1058_RS03260at 319.769 kb on - strand, within HMPREF1058_RS03260at 319.770 kb on + strand, within HMPREF1058_RS03260at 319.770 kb on + strand, within HMPREF1058_RS03260at 319.898 kb on - strand, within HMPREF1058_RS03260at 319.919 kb on - strand, within HMPREF1058_RS03260at 319.919 kb on - strand, within HMPREF1058_RS03260at 319.919 kb on - strand, within HMPREF1058_RS03260at 319.919 kb on - strand, within HMPREF1058_RS03260at 319.952 kb on + strand, within HMPREF1058_RS03260at 319.962 kb on + strand, within HMPREF1058_RS03260at 319.987 kb on + strandat 320.002 kb on + strandat 320.068 kb on + strandat 320.160 kb on + strandat 320.160 kb on + strandat 320.160 kb on + strandat 320.161 kb on - strandat 320.161 kb on - strandat 320.161 kb on - strandat 320.239 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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317,350 - HMPREF1058_RS03275 0.75 -2.4
317,421 + HMPREF1058_RS03275 0.89 +1.0
317,425 - HMPREF1058_RS03275 0.90 -1.4
317,476 - -1.1
317,484 + -1.1
317,601 - HMPREF1058_RS03270 0.22 -2.3
317,694 + HMPREF1058_RS03270 0.38 -0.1
317,764 - HMPREF1058_RS03270 0.50 -3.8
317,884 + HMPREF1058_RS03270 0.71 +0.2
317,914 - HMPREF1058_RS03270 0.76 -3.4
318,033 + +0.3
318,084 + +0.1
318,094 + -0.6
318,095 - -2.1
318,119 + -0.0
318,367 - HMPREF1058_RS03265 0.21 -4.1
318,367 - HMPREF1058_RS03265 0.21 -3.7
318,368 + HMPREF1058_RS03265 0.21 -3.5
318,399 + HMPREF1058_RS03265 0.23 -0.7
318,434 + HMPREF1058_RS03265 0.26 -3.3
318,469 - HMPREF1058_RS03265 0.30 -4.2
318,550 - HMPREF1058_RS03265 0.37 -0.7
318,601 + HMPREF1058_RS03265 0.41 -1.6
318,607 + HMPREF1058_RS03265 0.42 -1.9
318,631 - HMPREF1058_RS03265 0.44 -2.8
318,685 - HMPREF1058_RS03265 0.49 -3.6
318,701 + HMPREF1058_RS03265 0.50 -1.4
318,702 - HMPREF1058_RS03265 0.50 -2.7
318,706 + HMPREF1058_RS03265 0.50 -3.7
318,706 + HMPREF1058_RS03265 0.50 -3.6
318,707 - HMPREF1058_RS03265 0.51 -4.2
318,707 - HMPREF1058_RS03265 0.51 -5.2
318,708 + HMPREF1058_RS03265 0.51 -3.9
318,802 + HMPREF1058_RS03265 0.59 -4.3
318,802 + HMPREF1058_RS03265 0.59 -4.4
318,856 + HMPREF1058_RS03265 0.64 +2.8
318,892 - HMPREF1058_RS03265 0.67 -2.7
318,892 - HMPREF1058_RS03265 0.67 +1.2
319,012 + HMPREF1058_RS03265 0.78 -3.1
319,016 + HMPREF1058_RS03265 0.78 -2.4
319,023 + HMPREF1058_RS03265 0.79 -4.4
319,069 + HMPREF1058_RS03265 0.83 -1.2
319,119 + HMPREF1058_RS03265 0.87 -0.6
319,119 + HMPREF1058_RS03265 0.87 -5.0
319,120 - HMPREF1058_RS03265 0.87 -1.0
319,120 - HMPREF1058_RS03265 0.87 -5.4
319,120 - HMPREF1058_RS03265 0.87 -2.1
319,121 + HMPREF1058_RS03265 0.87 -3.1
319,121 + HMPREF1058_RS03265 0.87 -3.2
319,121 + HMPREF1058_RS03265 0.87 -0.8
319,122 - HMPREF1058_RS03265 0.87 -0.2
319,167 - -2.6
319,259 - -0.7
319,263 + +1.0
319,298 + +1.6
319,300 + +1.7
319,300 + +2.3
319,301 - -3.5
319,424 + HMPREF1058_RS03260 0.12 -0.6
319,425 - HMPREF1058_RS03260 0.12 +2.8
319,483 + HMPREF1058_RS03260 0.20 -0.4
319,516 + HMPREF1058_RS03260 0.25 -3.0
319,621 + HMPREF1058_RS03260 0.40 +1.2
319,683 + HMPREF1058_RS03260 0.49 -3.0
319,696 + HMPREF1058_RS03260 0.51 -0.6
319,697 - +0.8
319,730 + HMPREF1058_RS03260 0.56 -5.4
319,731 - HMPREF1058_RS03260 0.56 -2.1
319,739 + HMPREF1058_RS03260 0.57 -0.0
319,740 - HMPREF1058_RS03260 0.57 -3.0
319,768 + HMPREF1058_RS03260 0.61 -3.8
319,768 + HMPREF1058_RS03260 0.61 -1.9
319,769 - HMPREF1058_RS03260 0.61 -4.8
319,770 + HMPREF1058_RS03260 0.61 -5.1
319,770 + HMPREF1058_RS03260 0.61 -1.9
319,898 - HMPREF1058_RS03260 0.80 -3.7
319,919 - HMPREF1058_RS03260 0.83 -1.5
319,919 - HMPREF1058_RS03260 0.83 +0.2
319,919 - HMPREF1058_RS03260 0.83 -0.9
319,919 - HMPREF1058_RS03260 0.83 -4.9
319,952 + HMPREF1058_RS03260 0.88 -3.1
319,962 + HMPREF1058_RS03260 0.89 -5.0
319,987 + -2.6
320,002 + -5.5
320,068 + -1.5
320,160 + +0.7
320,160 + -3.1
320,160 + +3.2
320,161 - -0.2
320,161 - +2.1
320,161 - -0.9
320,239 + +1.9

Or see this region's nucleotide sequence