Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02620

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02625 and HMPREF1058_RS02620 are separated by 63 nucleotidesHMPREF1058_RS02620 and HMPREF1058_RS02615 are separated by 12 nucleotides HMPREF1058_RS02625: HMPREF1058_RS02625 - [FeFe] hydrogenase H-cluster maturation GTPase HydF, at 139,829 to 141,019 _RS02625 HMPREF1058_RS02620: HMPREF1058_RS02620 - [FeFe] hydrogenase H-cluster radical SAM maturase HydG, at 141,083 to 142,501 _RS02620 HMPREF1058_RS02615: HMPREF1058_RS02615 - [FeFe] hydrogenase H-cluster radical SAM maturase HydE, at 142,514 to 143,548 _RS02615 Position (kb) 141 142 143Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 140.176 kb on - strand, within HMPREF1058_RS02625at 140.178 kb on + strand, within HMPREF1058_RS02625at 140.179 kb on - strand, within HMPREF1058_RS02625at 140.179 kb on - strand, within HMPREF1058_RS02625at 140.184 kb on - strand, within HMPREF1058_RS02625at 140.184 kb on - strand, within HMPREF1058_RS02625at 140.341 kb on + strand, within HMPREF1058_RS02625at 140.373 kb on - strand, within HMPREF1058_RS02625at 140.390 kb on + strand, within HMPREF1058_RS02625at 140.390 kb on + strand, within HMPREF1058_RS02625at 140.427 kb on - strand, within HMPREF1058_RS02625at 140.453 kb on + strand, within HMPREF1058_RS02625at 140.600 kb on + strand, within HMPREF1058_RS02625at 140.601 kb on - strand, within HMPREF1058_RS02625at 140.621 kb on + strand, within HMPREF1058_RS02625at 140.771 kb on - strand, within HMPREF1058_RS02625at 140.846 kb on - strand, within HMPREF1058_RS02625at 140.980 kb on + strandat 140.981 kb on - strandat 140.984 kb on + strandat 141.012 kb on - strandat 141.020 kb on - strandat 141.113 kb on + strandat 141.163 kb on + strandat 141.163 kb on + strandat 141.305 kb on - strand, within HMPREF1058_RS02620at 141.305 kb on - strand, within HMPREF1058_RS02620at 141.320 kb on - strand, within HMPREF1058_RS02620at 141.547 kb on + strand, within HMPREF1058_RS02620at 141.553 kb on + strand, within HMPREF1058_RS02620at 141.554 kb on - strand, within HMPREF1058_RS02620at 141.554 kb on - strand, within HMPREF1058_RS02620at 141.559 kb on + strand, within HMPREF1058_RS02620at 141.609 kb on - strand, within HMPREF1058_RS02620at 141.610 kb on + strand, within HMPREF1058_RS02620at 141.685 kb on + strand, within HMPREF1058_RS02620at 141.789 kb on - strand, within HMPREF1058_RS02620at 141.837 kb on + strand, within HMPREF1058_RS02620at 141.844 kb on - strand, within HMPREF1058_RS02620at 141.844 kb on - strand, within HMPREF1058_RS02620at 141.879 kb on + strand, within HMPREF1058_RS02620at 141.914 kb on - strand, within HMPREF1058_RS02620at 141.916 kb on - strand, within HMPREF1058_RS02620at 141.916 kb on - strand, within HMPREF1058_RS02620at 142.019 kb on - strand, within HMPREF1058_RS02620at 142.020 kb on + strand, within HMPREF1058_RS02620at 142.020 kb on + strand, within HMPREF1058_RS02620at 142.020 kb on + strand, within HMPREF1058_RS02620at 142.048 kb on - strand, within HMPREF1058_RS02620at 142.054 kb on + strandat 142.054 kb on + strand, within HMPREF1058_RS02620at 142.197 kb on + strand, within HMPREF1058_RS02620at 142.247 kb on + strand, within HMPREF1058_RS02620at 142.431 kb on + strandat 142.432 kb on - strandat 142.479 kb on - strandat 142.498 kb on - strandat 142.498 kb on - strandat 142.498 kb on - strandat 142.626 kb on + strand, within HMPREF1058_RS02615at 142.627 kb on - strand, within HMPREF1058_RS02615at 142.627 kb on - strand, within HMPREF1058_RS02615at 142.677 kb on - strand, within HMPREF1058_RS02615at 143.013 kb on - strand, within HMPREF1058_RS02615at 143.041 kb on + strand, within HMPREF1058_RS02615at 143.042 kb on - strand, within HMPREF1058_RS02615at 143.448 kb on - strandat 143.451 kb on + strandat 143.451 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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140,176 - HMPREF1058_RS02625 0.29 -4.4
140,178 + HMPREF1058_RS02625 0.29 -3.1
140,179 - HMPREF1058_RS02625 0.29 -0.3
140,179 - HMPREF1058_RS02625 0.29 -3.5
140,184 - HMPREF1058_RS02625 0.30 -5.4
140,184 - HMPREF1058_RS02625 0.30 -3.2
140,341 + HMPREF1058_RS02625 0.43 -5.1
140,373 - HMPREF1058_RS02625 0.46 -4.8
140,390 + HMPREF1058_RS02625 0.47 -3.7
140,390 + HMPREF1058_RS02625 0.47 -2.9
140,427 - HMPREF1058_RS02625 0.50 -2.0
140,453 + HMPREF1058_RS02625 0.52 -2.3
140,600 + HMPREF1058_RS02625 0.65 -3.3
140,601 - HMPREF1058_RS02625 0.65 -3.0
140,621 + HMPREF1058_RS02625 0.66 -2.1
140,771 - HMPREF1058_RS02625 0.79 -4.3
140,846 - HMPREF1058_RS02625 0.85 -4.2
140,980 + -3.2
140,981 - -1.4
140,984 + -2.1
141,012 - -5.1
141,020 - -1.3
141,113 + -2.8
141,163 + -0.9
141,163 + -0.3
141,305 - HMPREF1058_RS02620 0.16 -4.5
141,305 - HMPREF1058_RS02620 0.16 -3.7
141,320 - HMPREF1058_RS02620 0.17 -2.6
141,547 + HMPREF1058_RS02620 0.33 -2.4
141,553 + HMPREF1058_RS02620 0.33 -2.5
141,554 - HMPREF1058_RS02620 0.33 -1.7
141,554 - HMPREF1058_RS02620 0.33 -5.7
141,559 + HMPREF1058_RS02620 0.34 -1.5
141,609 - HMPREF1058_RS02620 0.37 -1.2
141,610 + HMPREF1058_RS02620 0.37 -3.5
141,685 + HMPREF1058_RS02620 0.42 -2.3
141,789 - HMPREF1058_RS02620 0.50 -4.0
141,837 + HMPREF1058_RS02620 0.53 -2.2
141,844 - HMPREF1058_RS02620 0.54 -0.8
141,844 - HMPREF1058_RS02620 0.54 -1.1
141,879 + HMPREF1058_RS02620 0.56 -2.5
141,914 - HMPREF1058_RS02620 0.59 -3.0
141,916 - HMPREF1058_RS02620 0.59 -3.1
141,916 - HMPREF1058_RS02620 0.59 -3.9
142,019 - HMPREF1058_RS02620 0.66 -3.7
142,020 + HMPREF1058_RS02620 0.66 -3.5
142,020 + HMPREF1058_RS02620 0.66 -0.8
142,020 + HMPREF1058_RS02620 0.66 -4.4
142,048 - HMPREF1058_RS02620 0.68 -5.3
142,054 + -0.3
142,054 + HMPREF1058_RS02620 0.68 -2.3
142,197 + HMPREF1058_RS02620 0.79 -3.5
142,247 + HMPREF1058_RS02620 0.82 -1.0
142,431 + -3.8
142,432 - -4.6
142,479 - -4.6
142,498 - -3.1
142,498 - +1.1
142,498 - -3.8
142,626 + HMPREF1058_RS02615 0.11 -3.5
142,627 - HMPREF1058_RS02615 0.11 -3.4
142,627 - HMPREF1058_RS02615 0.11 -2.7
142,677 - HMPREF1058_RS02615 0.16 -1.4
143,013 - HMPREF1058_RS02615 0.48 -4.3
143,041 + HMPREF1058_RS02615 0.51 -3.8
143,042 - HMPREF1058_RS02615 0.51 -0.9
143,448 - -2.6
143,451 + -5.2
143,451 + -3.3

Or see this region's nucleotide sequence