Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02615

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02620 and HMPREF1058_RS02615 are separated by 12 nucleotidesHMPREF1058_RS02615 and HMPREF1058_RS02610 are separated by 8 nucleotides HMPREF1058_RS02620: HMPREF1058_RS02620 - [FeFe] hydrogenase H-cluster radical SAM maturase HydG, at 141,083 to 142,501 _RS02620 HMPREF1058_RS02615: HMPREF1058_RS02615 - [FeFe] hydrogenase H-cluster radical SAM maturase HydE, at 142,514 to 143,548 _RS02615 HMPREF1058_RS02610: HMPREF1058_RS02610 - 4Fe-4S dicluster domain-containing protein, at 143,557 to 145,023 _RS02610 Position (kb) 142 143 144Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 141.547 kb on + strand, within HMPREF1058_RS02620at 141.553 kb on + strand, within HMPREF1058_RS02620at 141.554 kb on - strand, within HMPREF1058_RS02620at 141.554 kb on - strand, within HMPREF1058_RS02620at 141.559 kb on + strand, within HMPREF1058_RS02620at 141.609 kb on - strand, within HMPREF1058_RS02620at 141.610 kb on + strand, within HMPREF1058_RS02620at 141.685 kb on + strand, within HMPREF1058_RS02620at 141.789 kb on - strand, within HMPREF1058_RS02620at 141.837 kb on + strand, within HMPREF1058_RS02620at 141.844 kb on - strand, within HMPREF1058_RS02620at 141.844 kb on - strand, within HMPREF1058_RS02620at 141.879 kb on + strand, within HMPREF1058_RS02620at 141.914 kb on - strand, within HMPREF1058_RS02620at 141.916 kb on - strand, within HMPREF1058_RS02620at 141.916 kb on - strand, within HMPREF1058_RS02620at 142.019 kb on - strand, within HMPREF1058_RS02620at 142.020 kb on + strand, within HMPREF1058_RS02620at 142.020 kb on + strand, within HMPREF1058_RS02620at 142.020 kb on + strand, within HMPREF1058_RS02620at 142.048 kb on - strand, within HMPREF1058_RS02620at 142.054 kb on + strandat 142.054 kb on + strand, within HMPREF1058_RS02620at 142.197 kb on + strand, within HMPREF1058_RS02620at 142.247 kb on + strand, within HMPREF1058_RS02620at 142.431 kb on + strandat 142.432 kb on - strandat 142.479 kb on - strandat 142.498 kb on - strandat 142.498 kb on - strandat 142.498 kb on - strandat 142.626 kb on + strand, within HMPREF1058_RS02615at 142.627 kb on - strand, within HMPREF1058_RS02615at 142.627 kb on - strand, within HMPREF1058_RS02615at 142.677 kb on - strand, within HMPREF1058_RS02615at 143.013 kb on - strand, within HMPREF1058_RS02615at 143.041 kb on + strand, within HMPREF1058_RS02615at 143.042 kb on - strand, within HMPREF1058_RS02615at 143.448 kb on - strandat 143.451 kb on + strandat 143.451 kb on + strandat 143.526 kb on - strandat 143.558 kb on + strandat 143.561 kb on + strandat 143.644 kb on - strandat 143.738 kb on - strand, within HMPREF1058_RS02610at 143.747 kb on - strand, within HMPREF1058_RS02610at 143.865 kb on - strandat 144.015 kb on - strand, within HMPREF1058_RS02610at 144.030 kb on + strand, within HMPREF1058_RS02610at 144.041 kb on + strand, within HMPREF1058_RS02610at 144.044 kb on + strand, within HMPREF1058_RS02610at 144.044 kb on + strand, within HMPREF1058_RS02610at 144.044 kb on + strand, within HMPREF1058_RS02610at 144.044 kb on + strand, within HMPREF1058_RS02610at 144.045 kb on - strand, within HMPREF1058_RS02610at 144.045 kb on - strand, within HMPREF1058_RS02610at 144.092 kb on + strandat 144.092 kb on + strand, within HMPREF1058_RS02610at 144.092 kb on + strand, within HMPREF1058_RS02610at 144.093 kb on - strand, within HMPREF1058_RS02610at 144.224 kb on - strand, within HMPREF1058_RS02610at 144.225 kb on + strand, within HMPREF1058_RS02610at 144.258 kb on - strand, within HMPREF1058_RS02610at 144.260 kb on - strand, within HMPREF1058_RS02610at 144.260 kb on - strandat 144.260 kb on - strand, within HMPREF1058_RS02610at 144.260 kb on - strand, within HMPREF1058_RS02610at 144.405 kb on + strand, within HMPREF1058_RS02610at 144.418 kb on - strand, within HMPREF1058_RS02610at 144.424 kb on - strand, within HMPREF1058_RS02610at 144.424 kb on - strand, within HMPREF1058_RS02610at 144.442 kb on + strand, within HMPREF1058_RS02610at 144.505 kb on - strand, within HMPREF1058_RS02610at 144.506 kb on + strand, within HMPREF1058_RS02610at 144.507 kb on - strand, within HMPREF1058_RS02610at 144.544 kb on - strand, within HMPREF1058_RS02610

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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141,547 + HMPREF1058_RS02620 0.33 -2.4
141,553 + HMPREF1058_RS02620 0.33 -2.5
141,554 - HMPREF1058_RS02620 0.33 -1.7
141,554 - HMPREF1058_RS02620 0.33 -5.7
141,559 + HMPREF1058_RS02620 0.34 -1.5
141,609 - HMPREF1058_RS02620 0.37 -1.2
141,610 + HMPREF1058_RS02620 0.37 -3.5
141,685 + HMPREF1058_RS02620 0.42 -2.3
141,789 - HMPREF1058_RS02620 0.50 -4.0
141,837 + HMPREF1058_RS02620 0.53 -2.2
141,844 - HMPREF1058_RS02620 0.54 -0.8
141,844 - HMPREF1058_RS02620 0.54 -1.1
141,879 + HMPREF1058_RS02620 0.56 -2.5
141,914 - HMPREF1058_RS02620 0.59 -3.0
141,916 - HMPREF1058_RS02620 0.59 -3.1
141,916 - HMPREF1058_RS02620 0.59 -3.9
142,019 - HMPREF1058_RS02620 0.66 -3.7
142,020 + HMPREF1058_RS02620 0.66 -3.5
142,020 + HMPREF1058_RS02620 0.66 -0.8
142,020 + HMPREF1058_RS02620 0.66 -4.4
142,048 - HMPREF1058_RS02620 0.68 -5.3
142,054 + -0.3
142,054 + HMPREF1058_RS02620 0.68 -2.3
142,197 + HMPREF1058_RS02620 0.79 -3.5
142,247 + HMPREF1058_RS02620 0.82 -1.0
142,431 + -3.8
142,432 - -4.6
142,479 - -4.6
142,498 - -3.1
142,498 - +1.1
142,498 - -3.8
142,626 + HMPREF1058_RS02615 0.11 -3.5
142,627 - HMPREF1058_RS02615 0.11 -3.4
142,627 - HMPREF1058_RS02615 0.11 -2.7
142,677 - HMPREF1058_RS02615 0.16 -1.4
143,013 - HMPREF1058_RS02615 0.48 -4.3
143,041 + HMPREF1058_RS02615 0.51 -3.8
143,042 - HMPREF1058_RS02615 0.51 -0.9
143,448 - -2.6
143,451 + -5.2
143,451 + -3.3
143,526 - -0.7
143,558 + -4.3
143,561 + -1.1
143,644 - -4.6
143,738 - HMPREF1058_RS02610 0.12 -2.9
143,747 - HMPREF1058_RS02610 0.13 -3.1
143,865 - -0.9
144,015 - HMPREF1058_RS02610 0.31 -3.6
144,030 + HMPREF1058_RS02610 0.32 -3.7
144,041 + HMPREF1058_RS02610 0.33 -2.2
144,044 + HMPREF1058_RS02610 0.33 -3.9
144,044 + HMPREF1058_RS02610 0.33 -1.8
144,044 + HMPREF1058_RS02610 0.33 -0.8
144,044 + HMPREF1058_RS02610 0.33 -3.5
144,045 - HMPREF1058_RS02610 0.33 -4.1
144,045 - HMPREF1058_RS02610 0.33 -2.5
144,092 + -0.7
144,092 + HMPREF1058_RS02610 0.36 -3.9
144,092 + HMPREF1058_RS02610 0.36 -0.9
144,093 - HMPREF1058_RS02610 0.37 -3.3
144,224 - HMPREF1058_RS02610 0.45 -2.1
144,225 + HMPREF1058_RS02610 0.46 -0.8
144,258 - HMPREF1058_RS02610 0.48 -1.0
144,260 - HMPREF1058_RS02610 0.48 -4.5
144,260 - -0.5
144,260 - HMPREF1058_RS02610 0.48 -4.3
144,260 - HMPREF1058_RS02610 0.48 -4.9
144,405 + HMPREF1058_RS02610 0.58 -3.7
144,418 - HMPREF1058_RS02610 0.59 -1.1
144,424 - HMPREF1058_RS02610 0.59 -1.7
144,424 - HMPREF1058_RS02610 0.59 -4.0
144,442 + HMPREF1058_RS02610 0.60 +0.1
144,505 - HMPREF1058_RS02610 0.65 -1.7
144,506 + HMPREF1058_RS02610 0.65 -3.7
144,507 - HMPREF1058_RS02610 0.65 -3.7
144,544 - HMPREF1058_RS02610 0.67 -2.2

Or see this region's nucleotide sequence