Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02500 and HMPREF1058_RS02495 are separated by 458 nucleotides HMPREF1058_RS02495 and HMPREF1058_RS02490 are separated by 41 nucleotides HMPREF1058_RS02490 and HMPREF1058_RS02485 are separated by 35 nucleotides
HMPREF1058_RS02500: HMPREF1058_RS02500 - histidine decarboxylase, at 168,345 to 168,953
_RS02500
HMPREF1058_RS02495: HMPREF1058_RS02495 - acyl-CoA dehydrogenase family protein, at 169,412 to 171,118
_RS02495
HMPREF1058_RS02490: HMPREF1058_RS02490 - four helix bundle protein, at 171,160 to 171,540
_RS02490
HMPREF1058_RS02485: HMPREF1058_RS02485 - electron transfer flavoprotein subunit alpha/FixB family protein, at 171,576 to 172,595
_RS02485
Position (kb) 169
170
171
172 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 168.480 kb on - strand, within HMPREF1058_RS02500 at 168.480 kb on - strand, within HMPREF1058_RS02500 at 168.499 kb on - strand, within HMPREF1058_RS02500 at 168.532 kb on + strand, within HMPREF1058_RS02500 at 168.532 kb on + strand, within HMPREF1058_RS02500 at 168.557 kb on + strand, within HMPREF1058_RS02500 at 168.618 kb on - strand, within HMPREF1058_RS02500 at 168.633 kb on + strand, within HMPREF1058_RS02500 at 168.724 kb on + strand, within HMPREF1058_RS02500 at 168.725 kb on - strand, within HMPREF1058_RS02500 at 168.725 kb on - strand, within HMPREF1058_RS02500 at 168.726 kb on + strand, within HMPREF1058_RS02500 at 168.726 kb on + strand, within HMPREF1058_RS02500 at 168.861 kb on + strand, within HMPREF1058_RS02500 at 168.906 kb on + strand at 168.954 kb on - strand at 168.989 kb on + strand at 168.990 kb on - strand at 168.990 kb on - strand at 169.043 kb on + strand at 169.052 kb on + strand at 169.052 kb on + strand at 169.146 kb on + strand at 169.166 kb on + strand at 169.199 kb on + strand at 169.253 kb on - strand at 169.256 kb on + strand at 169.327 kb on + strand at 169.328 kb on - strand at 169.348 kb on + strand at 169.351 kb on - strand at 169.351 kb on - strand at 169.354 kb on - strand at 169.382 kb on - strand at 169.491 kb on + strand at 169.491 kb on + strand at 169.492 kb on - strand at 169.496 kb on + strand at 169.496 kb on + strand at 169.502 kb on + strand at 169.502 kb on + strand at 169.503 kb on - strand at 169.503 kb on - strand at 169.503 kb on - strand at 169.570 kb on + strand at 169.571 kb on - strand at 169.617 kb on - strand, within HMPREF1058_RS02495 at 169.617 kb on - strand, within HMPREF1058_RS02495 at 169.723 kb on + strand, within HMPREF1058_RS02495 at 169.731 kb on + strand, within HMPREF1058_RS02495 at 169.753 kb on - strand, within HMPREF1058_RS02495 at 169.766 kb on + strand, within HMPREF1058_RS02495 at 169.766 kb on + strand, within HMPREF1058_RS02495 at 169.843 kb on + strand, within HMPREF1058_RS02495 at 169.843 kb on + strand, within HMPREF1058_RS02495 at 170.043 kb on + strand, within HMPREF1058_RS02495 at 170.124 kb on + strand, within HMPREF1058_RS02495 at 170.125 kb on - strand, within HMPREF1058_RS02495 at 170.126 kb on + strand, within HMPREF1058_RS02495 at 170.126 kb on + strand, within HMPREF1058_RS02495 at 170.127 kb on - strand, within HMPREF1058_RS02495 at 170.127 kb on - strand, within HMPREF1058_RS02495 at 170.165 kb on - strand, within HMPREF1058_RS02495 at 170.268 kb on + strand, within HMPREF1058_RS02495 at 170.362 kb on + strand at 170.379 kb on - strand, within HMPREF1058_RS02495 at 170.384 kb on + strand, within HMPREF1058_RS02495 at 170.407 kb on - strand, within HMPREF1058_RS02495 at 170.407 kb on - strand, within HMPREF1058_RS02495 at 170.462 kb on + strand, within HMPREF1058_RS02495 at 170.670 kb on + strand, within HMPREF1058_RS02495 at 170.671 kb on - strand, within HMPREF1058_RS02495 at 170.989 kb on - strand at 171.020 kb on - strand at 171.096 kb on - strand at 171.129 kb on - strand at 171.132 kb on + strand at 171.132 kb on + strand at 171.132 kb on + strand at 171.145 kb on - strand at 171.145 kb on - strand at 171.151 kb on + strand at 171.161 kb on + strand at 171.161 kb on + strand at 171.161 kb on + strand at 171.162 kb on - strand at 171.239 kb on - strand, within HMPREF1058_RS02490 at 171.239 kb on - strand, within HMPREF1058_RS02490 at 171.558 kb on - strand at 171.561 kb on + strand at 171.562 kb on - strand at 171.562 kb on - strand at 171.562 kb on - strand at 171.562 kb on - strand at 171.596 kb on - strand at 171.598 kb on + strand at 171.642 kb on + strand at 171.643 kb on - strand at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.997 kb on + strand, within HMPREF1058_RS02485 at 171.998 kb on - strand, within HMPREF1058_RS02485
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 168,480 - HMPREF1058_RS02500 0.22 +0.1 168,480 - HMPREF1058_RS02500 0.22 -0.6 168,499 - HMPREF1058_RS02500 0.25 +2.4 168,532 + HMPREF1058_RS02500 0.31 +2.7 168,532 + HMPREF1058_RS02500 0.31 +0.3 168,557 + HMPREF1058_RS02500 0.35 +3.7 168,618 - HMPREF1058_RS02500 0.45 -0.3 168,633 + HMPREF1058_RS02500 0.47 -1.4 168,724 + HMPREF1058_RS02500 0.62 +1.8 168,725 - HMPREF1058_RS02500 0.62 -0.2 168,725 - HMPREF1058_RS02500 0.62 +0.4 168,726 + HMPREF1058_RS02500 0.63 +0.3 168,726 + HMPREF1058_RS02500 0.63 -0.8 168,861 + HMPREF1058_RS02500 0.85 -2.1 168,906 + -1.8 168,954 - +0.7 168,989 + -4.4 168,990 - -1.9 168,990 - -2.3 169,043 + -1.7 169,052 + -0.8 169,052 + -2.7 169,146 + +0.7 169,166 + -1.0 169,199 + -2.2 169,253 - +1.6 169,256 + -0.8 169,327 + -1.3 169,328 - +2.0 169,348 + +0.8 169,351 - +0.9 169,351 - +0.5 169,354 - -1.5 169,382 - -1.1 169,491 + -4.0 169,491 + -1.1 169,492 - -1.0 169,496 + -1.3 169,496 + +0.7 169,502 + -2.2 169,502 + -0.8 169,503 - -4.0 169,503 - -4.7 169,503 - -3.4 169,570 + -2.3 169,571 - -0.5 169,617 - HMPREF1058_RS02495 0.12 -1.4 169,617 - HMPREF1058_RS02495 0.12 -2.5 169,723 + HMPREF1058_RS02495 0.18 -1.2 169,731 + HMPREF1058_RS02495 0.19 -3.3 169,753 - HMPREF1058_RS02495 0.20 -5.8 169,766 + HMPREF1058_RS02495 0.21 -0.8 169,766 + HMPREF1058_RS02495 0.21 -4.7 169,843 + HMPREF1058_RS02495 0.25 -2.4 169,843 + HMPREF1058_RS02495 0.25 -1.9 170,043 + HMPREF1058_RS02495 0.37 -4.4 170,124 + HMPREF1058_RS02495 0.42 -3.4 170,125 - HMPREF1058_RS02495 0.42 -5.0 170,126 + HMPREF1058_RS02495 0.42 -1.5 170,126 + HMPREF1058_RS02495 0.42 -1.4 170,127 - HMPREF1058_RS02495 0.42 -3.7 170,127 - HMPREF1058_RS02495 0.42 -1.4 170,165 - HMPREF1058_RS02495 0.44 -3.1 170,268 + HMPREF1058_RS02495 0.50 -2.2 170,362 + +0.3 170,379 - HMPREF1058_RS02495 0.57 -1.5 170,384 + HMPREF1058_RS02495 0.57 -1.1 170,407 - HMPREF1058_RS02495 0.58 -2.9 170,407 - HMPREF1058_RS02495 0.58 -1.5 170,462 + HMPREF1058_RS02495 0.62 -3.5 170,670 + HMPREF1058_RS02495 0.74 -4.3 170,671 - HMPREF1058_RS02495 0.74 -2.0 170,989 - -3.3 171,020 - -2.1 171,096 - -3.5 171,129 - -0.0 171,132 + -2.4 171,132 + -1.4 171,132 + -4.8 171,145 - -1.8 171,145 - +0.1 171,151 + -2.9 171,161 + -2.9 171,161 + -2.1 171,161 + -0.1 171,162 - -0.3 171,239 - HMPREF1058_RS02490 0.21 -0.2 171,239 - HMPREF1058_RS02490 0.21 +2.4 171,558 - -1.2 171,561 + -1.9 171,562 - +0.2 171,562 - -1.9 171,562 - +0.5 171,562 - -1.6 171,596 - -4.9 171,598 + -1.4 171,642 + -4.0 171,643 - -4.6 171,997 + HMPREF1058_RS02485 0.41 -1.9 171,997 + HMPREF1058_RS02485 0.41 -4.3 171,997 + HMPREF1058_RS02485 0.41 -3.4 171,997 + HMPREF1058_RS02485 0.41 -4.3 171,998 - HMPREF1058_RS02485 0.41 -3.5
Or see this region's nucleotide sequence