Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02280

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02285 and HMPREF1058_RS02280 are separated by 17 nucleotidesHMPREF1058_RS02280 and HMPREF1058_RS02275 are separated by 201 nucleotides HMPREF1058_RS02285: HMPREF1058_RS02285 - radical SAM protein, at 236,160 to 237,485 _RS02285 HMPREF1058_RS02280: HMPREF1058_RS02280 - carboxypeptidase regulatory-like domain-containing protein, at 237,503 to 239,833 _RS02280 HMPREF1058_RS02275: HMPREF1058_RS02275 - outer membrane beta-barrel protein, at 240,035 to 242,344 _RS02275 Position (kb) 237 238 239 240Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 236.558 kb on + strand, within HMPREF1058_RS02285at 236.559 kb on - strand, within HMPREF1058_RS02285at 236.561 kb on + strand, within HMPREF1058_RS02285at 236.834 kb on - strand, within HMPREF1058_RS02285at 236.862 kb on - strand, within HMPREF1058_RS02285at 236.913 kb on - strand, within HMPREF1058_RS02285at 236.935 kb on + strand, within HMPREF1058_RS02285at 236.992 kb on + strand, within HMPREF1058_RS02285at 237.029 kb on - strand, within HMPREF1058_RS02285at 237.033 kb on - strand, within HMPREF1058_RS02285at 237.121 kb on + strand, within HMPREF1058_RS02285at 237.129 kb on + strand, within HMPREF1058_RS02285at 237.130 kb on - strand, within HMPREF1058_RS02285at 237.143 kb on - strand, within HMPREF1058_RS02285at 237.147 kb on + strand, within HMPREF1058_RS02285at 237.156 kb on - strand, within HMPREF1058_RS02285at 237.157 kb on + strand, within HMPREF1058_RS02285at 237.162 kb on + strand, within HMPREF1058_RS02285at 237.163 kb on - strand, within HMPREF1058_RS02285at 237.175 kb on + strand, within HMPREF1058_RS02285at 237.175 kb on + strand, within HMPREF1058_RS02285at 237.176 kb on - strand, within HMPREF1058_RS02285at 237.177 kb on + strand, within HMPREF1058_RS02285at 237.244 kb on + strand, within HMPREF1058_RS02285at 237.245 kb on - strand, within HMPREF1058_RS02285at 237.416 kb on - strandat 237.437 kb on + strandat 237.450 kb on + strandat 237.450 kb on + strandat 237.483 kb on + strandat 237.511 kb on - strandat 237.535 kb on - strandat 237.538 kb on + strandat 237.555 kb on - strandat 237.697 kb on - strandat 237.719 kb on + strandat 237.759 kb on + strand, within HMPREF1058_RS02280at 237.796 kb on - strand, within HMPREF1058_RS02280at 237.799 kb on + strand, within HMPREF1058_RS02280at 237.800 kb on - strand, within HMPREF1058_RS02280at 237.800 kb on - strand, within HMPREF1058_RS02280at 237.920 kb on - strand, within HMPREF1058_RS02280at 237.976 kb on + strand, within HMPREF1058_RS02280at 237.976 kb on + strand, within HMPREF1058_RS02280at 238.057 kb on - strand, within HMPREF1058_RS02280at 238.084 kb on - strand, within HMPREF1058_RS02280at 238.095 kb on - strand, within HMPREF1058_RS02280at 238.096 kb on + strand, within HMPREF1058_RS02280at 238.097 kb on - strand, within HMPREF1058_RS02280at 238.126 kb on + strand, within HMPREF1058_RS02280at 238.148 kb on - strand, within HMPREF1058_RS02280at 238.151 kb on + strand, within HMPREF1058_RS02280at 238.151 kb on + strand, within HMPREF1058_RS02280at 238.151 kb on + strand, within HMPREF1058_RS02280at 238.152 kb on - strand, within HMPREF1058_RS02280at 238.153 kb on + strand, within HMPREF1058_RS02280at 238.154 kb on - strandat 238.154 kb on - strand, within HMPREF1058_RS02280at 238.154 kb on - strand, within HMPREF1058_RS02280at 238.199 kb on - strand, within HMPREF1058_RS02280at 238.238 kb on + strand, within HMPREF1058_RS02280at 238.287 kb on + strand, within HMPREF1058_RS02280at 238.301 kb on + strand, within HMPREF1058_RS02280at 238.302 kb on - strand, within HMPREF1058_RS02280at 238.424 kb on + strand, within HMPREF1058_RS02280at 238.427 kb on - strand, within HMPREF1058_RS02280at 238.427 kb on - strand, within HMPREF1058_RS02280at 238.452 kb on + strand, within HMPREF1058_RS02280at 238.452 kb on + strand, within HMPREF1058_RS02280at 238.452 kb on + strandat 238.452 kb on + strand, within HMPREF1058_RS02280at 238.457 kb on - strand, within HMPREF1058_RS02280at 238.484 kb on - strand, within HMPREF1058_RS02280at 238.540 kb on - strand, within HMPREF1058_RS02280at 238.543 kb on + strand, within HMPREF1058_RS02280at 238.564 kb on + strand, within HMPREF1058_RS02280at 238.564 kb on + strand, within HMPREF1058_RS02280at 238.633 kb on - strand, within HMPREF1058_RS02280at 238.649 kb on + strand, within HMPREF1058_RS02280at 238.652 kb on - strand, within HMPREF1058_RS02280at 238.652 kb on - strand, within HMPREF1058_RS02280at 238.654 kb on - strand, within HMPREF1058_RS02280at 238.654 kb on - strand, within HMPREF1058_RS02280at 238.665 kb on - strand, within HMPREF1058_RS02280at 238.678 kb on + strand, within HMPREF1058_RS02280at 238.690 kb on + strand, within HMPREF1058_RS02280at 238.719 kb on - strand, within HMPREF1058_RS02280at 238.815 kb on - strand, within HMPREF1058_RS02280at 238.827 kb on - strand, within HMPREF1058_RS02280at 238.827 kb on - strand, within HMPREF1058_RS02280at 238.829 kb on - strand, within HMPREF1058_RS02280at 238.877 kb on - strand, within HMPREF1058_RS02280at 238.944 kb on + strand, within HMPREF1058_RS02280at 238.996 kb on + strand, within HMPREF1058_RS02280at 239.171 kb on + strand, within HMPREF1058_RS02280at 239.190 kb on + strand, within HMPREF1058_RS02280at 239.191 kb on - strand, within HMPREF1058_RS02280at 239.269 kb on - strand, within HMPREF1058_RS02280at 239.278 kb on - strand, within HMPREF1058_RS02280at 239.300 kb on - strand, within HMPREF1058_RS02280at 239.300 kb on - strand, within HMPREF1058_RS02280at 239.303 kb on - strand, within HMPREF1058_RS02280at 239.303 kb on - strand, within HMPREF1058_RS02280at 239.363 kb on - strand, within HMPREF1058_RS02280at 239.385 kb on + strand, within HMPREF1058_RS02280at 239.442 kb on - strand, within HMPREF1058_RS02280at 239.445 kb on + strand, within HMPREF1058_RS02280at 239.446 kb on - strand, within HMPREF1058_RS02280at 239.453 kb on + strand, within HMPREF1058_RS02280at 239.455 kb on + strand, within HMPREF1058_RS02280at 239.455 kb on + strand, within HMPREF1058_RS02280at 239.455 kb on + strand, within HMPREF1058_RS02280at 239.465 kb on + strand, within HMPREF1058_RS02280at 239.466 kb on - strand, within HMPREF1058_RS02280at 239.511 kb on - strand, within HMPREF1058_RS02280at 239.519 kb on - strand, within HMPREF1058_RS02280at 239.533 kb on + strandat 239.534 kb on - strand, within HMPREF1058_RS02280at 239.534 kb on - strand, within HMPREF1058_RS02280at 239.583 kb on + strand, within HMPREF1058_RS02280at 239.595 kb on - strand, within HMPREF1058_RS02280at 239.777 kb on - strandat 239.794 kb on - strandat 239.822 kb on - strandat 239.835 kb on + strandat 239.836 kb on - strandat 239.884 kb on + strandat 239.885 kb on - strandat 239.885 kb on - strandat 239.892 kb on + strandat 239.893 kb on - strandat 239.905 kb on - strandat 239.943 kb on - strandat 239.945 kb on + strandat 239.946 kb on - strandat 239.988 kb on - strandat 239.990 kb on - strandat 239.998 kb on - strandat 240.000 kb on + strandat 240.000 kb on + strandat 240.002 kb on + strandat 240.034 kb on + strandat 240.035 kb on - strandat 240.062 kb on + strandat 240.063 kb on - strandat 240.120 kb on + strandat 240.159 kb on + strandat 240.159 kb on + strandat 240.159 kb on + strandat 240.159 kb on + strandat 240.159 kb on + strandat 240.160 kb on - strandat 240.166 kb on - strandat 240.271 kb on + strand, within HMPREF1058_RS02275at 240.272 kb on - strand, within HMPREF1058_RS02275at 240.283 kb on + strand, within HMPREF1058_RS02275at 240.300 kb on + strand, within HMPREF1058_RS02275at 240.301 kb on - strand, within HMPREF1058_RS02275at 240.354 kb on + strand, within HMPREF1058_RS02275at 240.425 kb on - strand, within HMPREF1058_RS02275at 240.433 kb on + strand, within HMPREF1058_RS02275at 240.433 kb on + strand, within HMPREF1058_RS02275at 240.434 kb on - strand, within HMPREF1058_RS02275at 240.538 kb on + strand, within HMPREF1058_RS02275at 240.538 kb on + strand, within HMPREF1058_RS02275at 240.539 kb on - strand, within HMPREF1058_RS02275at 240.539 kb on - strand, within HMPREF1058_RS02275at 240.543 kb on - strand, within HMPREF1058_RS02275at 240.605 kb on - strand, within HMPREF1058_RS02275at 240.728 kb on + strand, within HMPREF1058_RS02275at 240.769 kb on - strand, within HMPREF1058_RS02275at 240.769 kb on - strand, within HMPREF1058_RS02275at 240.769 kb on - strand, within HMPREF1058_RS02275at 240.827 kb on + strand, within HMPREF1058_RS02275at 240.828 kb on - strand, within HMPREF1058_RS02275

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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236,558 + HMPREF1058_RS02285 0.30 +1.4
236,559 - HMPREF1058_RS02285 0.30 -1.0
236,561 + HMPREF1058_RS02285 0.30 -2.3
236,834 - HMPREF1058_RS02285 0.51 -0.9
236,862 - HMPREF1058_RS02285 0.53 -2.5
236,913 - HMPREF1058_RS02285 0.57 -1.9
236,935 + HMPREF1058_RS02285 0.58 -3.0
236,992 + HMPREF1058_RS02285 0.63 -0.4
237,029 - HMPREF1058_RS02285 0.66 -0.5
237,033 - HMPREF1058_RS02285 0.66 -1.7
237,121 + HMPREF1058_RS02285 0.72 -2.9
237,129 + HMPREF1058_RS02285 0.73 -0.1
237,130 - HMPREF1058_RS02285 0.73 -1.1
237,143 - HMPREF1058_RS02285 0.74 +0.7
237,147 + HMPREF1058_RS02285 0.74 +2.2
237,156 - HMPREF1058_RS02285 0.75 -1.0
237,157 + HMPREF1058_RS02285 0.75 +0.7
237,162 + HMPREF1058_RS02285 0.76 -0.5
237,163 - HMPREF1058_RS02285 0.76 -2.2
237,175 + HMPREF1058_RS02285 0.77 +0.2
237,175 + HMPREF1058_RS02285 0.77 -1.7
237,176 - HMPREF1058_RS02285 0.77 -4.6
237,177 + HMPREF1058_RS02285 0.77 -2.9
237,244 + HMPREF1058_RS02285 0.82 -3.2
237,245 - HMPREF1058_RS02285 0.82 -1.6
237,416 - -2.2
237,437 + -5.2
237,450 + -1.4
237,450 + -2.4
237,483 + -1.2
237,511 - -4.0
237,535 - -3.1
237,538 + -2.6
237,555 - -1.0
237,697 - -0.8
237,719 + -4.9
237,759 + HMPREF1058_RS02280 0.11 -1.4
237,796 - HMPREF1058_RS02280 0.13 -2.6
237,799 + HMPREF1058_RS02280 0.13 -3.3
237,800 - HMPREF1058_RS02280 0.13 -3.2
237,800 - HMPREF1058_RS02280 0.13 -2.5
237,920 - HMPREF1058_RS02280 0.18 +0.3
237,976 + HMPREF1058_RS02280 0.20 -1.7
237,976 + HMPREF1058_RS02280 0.20 -3.3
238,057 - HMPREF1058_RS02280 0.24 +0.1
238,084 - HMPREF1058_RS02280 0.25 -3.2
238,095 - HMPREF1058_RS02280 0.25 -4.2
238,096 + HMPREF1058_RS02280 0.25 -2.1
238,097 - HMPREF1058_RS02280 0.25 -3.8
238,126 + HMPREF1058_RS02280 0.27 -3.7
238,148 - HMPREF1058_RS02280 0.28 -2.9
238,151 + HMPREF1058_RS02280 0.28 -0.1
238,151 + HMPREF1058_RS02280 0.28 -1.9
238,151 + HMPREF1058_RS02280 0.28 -4.3
238,152 - HMPREF1058_RS02280 0.28 +2.7
238,153 + HMPREF1058_RS02280 0.28 -0.8
238,154 - +0.3
238,154 - HMPREF1058_RS02280 0.28 -3.6
238,154 - HMPREF1058_RS02280 0.28 -1.8
238,199 - HMPREF1058_RS02280 0.30 -0.3
238,238 + HMPREF1058_RS02280 0.32 -3.7
238,287 + HMPREF1058_RS02280 0.34 -0.7
238,301 + HMPREF1058_RS02280 0.34 -2.1
238,302 - HMPREF1058_RS02280 0.34 -3.6
238,424 + HMPREF1058_RS02280 0.40 -2.9
238,427 - HMPREF1058_RS02280 0.40 +1.7
238,427 - HMPREF1058_RS02280 0.40 +0.1
238,452 + HMPREF1058_RS02280 0.41 -2.8
238,452 + HMPREF1058_RS02280 0.41 +1.7
238,452 + -0.7
238,452 + HMPREF1058_RS02280 0.41 -4.3
238,457 - HMPREF1058_RS02280 0.41 -1.9
238,484 - HMPREF1058_RS02280 0.42 -0.5
238,540 - HMPREF1058_RS02280 0.44 -1.9
238,543 + HMPREF1058_RS02280 0.45 -3.7
238,564 + HMPREF1058_RS02280 0.46 -2.0
238,564 + HMPREF1058_RS02280 0.46 -2.1
238,633 - HMPREF1058_RS02280 0.48 -4.6
238,649 + HMPREF1058_RS02280 0.49 -3.5
238,652 - HMPREF1058_RS02280 0.49 -2.2
238,652 - HMPREF1058_RS02280 0.49 -2.2
238,654 - HMPREF1058_RS02280 0.49 -4.9
238,654 - HMPREF1058_RS02280 0.49 -0.9
238,665 - HMPREF1058_RS02280 0.50 -4.6
238,678 + HMPREF1058_RS02280 0.50 -1.4
238,690 + HMPREF1058_RS02280 0.51 -1.7
238,719 - HMPREF1058_RS02280 0.52 -2.0
238,815 - HMPREF1058_RS02280 0.56 -1.2
238,827 - HMPREF1058_RS02280 0.57 -2.5
238,827 - HMPREF1058_RS02280 0.57 -4.9
238,829 - HMPREF1058_RS02280 0.57 -3.7
238,877 - HMPREF1058_RS02280 0.59 -1.6
238,944 + HMPREF1058_RS02280 0.62 -2.0
238,996 + HMPREF1058_RS02280 0.64 -0.8
239,171 + HMPREF1058_RS02280 0.72 -2.4
239,190 + HMPREF1058_RS02280 0.72 -2.0
239,191 - HMPREF1058_RS02280 0.72 -3.2
239,269 - HMPREF1058_RS02280 0.76 -2.9
239,278 - HMPREF1058_RS02280 0.76 -3.2
239,300 - HMPREF1058_RS02280 0.77 -4.2
239,300 - HMPREF1058_RS02280 0.77 -0.3
239,303 - HMPREF1058_RS02280 0.77 -0.3
239,303 - HMPREF1058_RS02280 0.77 -3.1
239,363 - HMPREF1058_RS02280 0.80 -0.7
239,385 + HMPREF1058_RS02280 0.81 -2.0
239,442 - HMPREF1058_RS02280 0.83 -2.6
239,445 + HMPREF1058_RS02280 0.83 -3.3
239,446 - HMPREF1058_RS02280 0.83 -4.5
239,453 + HMPREF1058_RS02280 0.84 -3.2
239,455 + HMPREF1058_RS02280 0.84 +0.3
239,455 + HMPREF1058_RS02280 0.84 -0.1
239,455 + HMPREF1058_RS02280 0.84 -3.4
239,465 + HMPREF1058_RS02280 0.84 -2.4
239,466 - HMPREF1058_RS02280 0.84 -2.2
239,511 - HMPREF1058_RS02280 0.86 -1.9
239,519 - HMPREF1058_RS02280 0.86 -0.9
239,533 + -0.5
239,534 - HMPREF1058_RS02280 0.87 -1.2
239,534 - HMPREF1058_RS02280 0.87 -2.9
239,583 + HMPREF1058_RS02280 0.89 -2.4
239,595 - HMPREF1058_RS02280 0.90 -3.9
239,777 - -3.9
239,794 - -1.9
239,822 - -2.7
239,835 + +1.1
239,836 - -1.4
239,884 + +0.8
239,885 - -3.0
239,885 - -2.5
239,892 + -1.2
239,893 - +0.9
239,905 - -3.0
239,943 - -1.8
239,945 + -2.3
239,946 - +0.5
239,988 - -3.4
239,990 - -1.0
239,998 - -0.9
240,000 + -1.7
240,000 + -1.7
240,002 + -0.8
240,034 + -3.0
240,035 - -0.3
240,062 + -1.7
240,063 - -0.3
240,120 + -0.3
240,159 + -0.6
240,159 + -0.2
240,159 + -5.1
240,159 + +0.4
240,159 + -1.1
240,160 - +0.0
240,166 - -0.1
240,271 + HMPREF1058_RS02275 0.10 +0.6
240,272 - HMPREF1058_RS02275 0.10 +1.6
240,283 + HMPREF1058_RS02275 0.11 +1.9
240,300 + HMPREF1058_RS02275 0.11 -1.1
240,301 - HMPREF1058_RS02275 0.12 -1.2
240,354 + HMPREF1058_RS02275 0.14 -0.1
240,425 - HMPREF1058_RS02275 0.17 +0.3
240,433 + HMPREF1058_RS02275 0.17 -1.4
240,433 + HMPREF1058_RS02275 0.17 +1.1
240,434 - HMPREF1058_RS02275 0.17 -1.0
240,538 + HMPREF1058_RS02275 0.22 +0.1
240,538 + HMPREF1058_RS02275 0.22 -1.5
240,539 - HMPREF1058_RS02275 0.22 -1.4
240,539 - HMPREF1058_RS02275 0.22 -0.5
240,543 - HMPREF1058_RS02275 0.22 +0.7
240,605 - HMPREF1058_RS02275 0.25 -2.6
240,728 + HMPREF1058_RS02275 0.30 -0.3
240,769 - HMPREF1058_RS02275 0.32 -0.4
240,769 - HMPREF1058_RS02275 0.32 +0.1
240,769 - HMPREF1058_RS02275 0.32 -1.2
240,827 + HMPREF1058_RS02275 0.34 +0.4
240,828 - HMPREF1058_RS02275 0.34 -0.2

Or see this region's nucleotide sequence