Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02170 and HMPREF1058_RS02165 are separated by 156 nucleotides HMPREF1058_RS02165 and HMPREF1058_RS02160 are separated by 96 nucleotides
HMPREF1058_RS02170: HMPREF1058_RS02170 - hypothetical protein, at 266,121 to 266,993
_RS02170
HMPREF1058_RS02165: HMPREF1058_RS02165 - malate dehydrogenase, at 267,150 to 268,091
_RS02165
HMPREF1058_RS02160: HMPREF1058_RS02160 - hypothetical protein, at 268,188 to 269,972
_RS02160
Position (kb) 267
268
269 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 266.183 kb on - strand at 266.200 kb on + strand at 266.282 kb on + strand, within HMPREF1058_RS02170 at 266.325 kb on + strand, within HMPREF1058_RS02170 at 266.326 kb on - strand at 266.348 kb on + strand, within HMPREF1058_RS02170 at 266.353 kb on - strand, within HMPREF1058_RS02170 at 266.353 kb on - strand, within HMPREF1058_RS02170 at 266.353 kb on - strand, within HMPREF1058_RS02170 at 266.356 kb on + strand, within HMPREF1058_RS02170 at 266.356 kb on + strand, within HMPREF1058_RS02170 at 266.357 kb on - strand, within HMPREF1058_RS02170 at 266.357 kb on - strand, within HMPREF1058_RS02170 at 266.450 kb on + strand, within HMPREF1058_RS02170 at 266.478 kb on - strand, within HMPREF1058_RS02170 at 266.576 kb on - strand, within HMPREF1058_RS02170 at 266.638 kb on - strand, within HMPREF1058_RS02170 at 266.650 kb on + strand, within HMPREF1058_RS02170 at 266.651 kb on - strand, within HMPREF1058_RS02170 at 266.651 kb on - strand, within HMPREF1058_RS02170 at 266.651 kb on - strand, within HMPREF1058_RS02170 at 266.670 kb on + strand, within HMPREF1058_RS02170 at 266.671 kb on - strand, within HMPREF1058_RS02170 at 266.733 kb on + strand, within HMPREF1058_RS02170 at 266.843 kb on + strand, within HMPREF1058_RS02170 at 266.846 kb on - strand, within HMPREF1058_RS02170 at 267.021 kb on + strand at 267.027 kb on - strand at 267.036 kb on - strand at 267.105 kb on + strand at 267.150 kb on - strand at 267.150 kb on - strand at 267.166 kb on + strand at 267.184 kb on + strand at 267.184 kb on + strand at 267.184 kb on + strand at 267.184 kb on + strand at 267.235 kb on + strand at 267.236 kb on - strand at 267.238 kb on + strand at 267.284 kb on + strand, within HMPREF1058_RS02165 at 267.329 kb on - strand, within HMPREF1058_RS02165 at 267.435 kb on - strand, within HMPREF1058_RS02165 at 267.467 kb on + strand, within HMPREF1058_RS02165 at 267.472 kb on + strand, within HMPREF1058_RS02165 at 267.492 kb on - strand, within HMPREF1058_RS02165 at 267.499 kb on + strand, within HMPREF1058_RS02165 at 267.500 kb on - strand, within HMPREF1058_RS02165 at 267.500 kb on - strand, within HMPREF1058_RS02165 at 267.524 kb on + strand, within HMPREF1058_RS02165 at 267.524 kb on + strand, within HMPREF1058_RS02165 at 267.524 kb on + strand, within HMPREF1058_RS02165 at 267.525 kb on - strand, within HMPREF1058_RS02165 at 267.531 kb on + strand, within HMPREF1058_RS02165 at 267.531 kb on + strand, within HMPREF1058_RS02165 at 267.532 kb on - strand, within HMPREF1058_RS02165 at 267.566 kb on + strand, within HMPREF1058_RS02165 at 267.683 kb on + strand, within HMPREF1058_RS02165 at 267.684 kb on - strand, within HMPREF1058_RS02165 at 267.686 kb on + strand, within HMPREF1058_RS02165 at 267.686 kb on + strand, within HMPREF1058_RS02165 at 267.687 kb on - strand, within HMPREF1058_RS02165 at 267.690 kb on - strand, within HMPREF1058_RS02165 at 267.718 kb on - strand, within HMPREF1058_RS02165 at 267.718 kb on - strand, within HMPREF1058_RS02165 at 267.779 kb on + strand, within HMPREF1058_RS02165 at 267.831 kb on + strand, within HMPREF1058_RS02165 at 267.925 kb on - strand, within HMPREF1058_RS02165 at 267.939 kb on - strand, within HMPREF1058_RS02165 at 268.059 kb on - strand at 268.079 kb on - strand at 268.104 kb on - strand at 268.105 kb on + strand at 268.294 kb on - strand at 268.424 kb on - strand, within HMPREF1058_RS02160 at 268.456 kb on - strand, within HMPREF1058_RS02160 at 268.482 kb on - strand, within HMPREF1058_RS02160 at 268.485 kb on + strand, within HMPREF1058_RS02160 at 268.491 kb on + strand, within HMPREF1058_RS02160 at 268.558 kb on + strand, within HMPREF1058_RS02160 at 268.559 kb on - strand, within HMPREF1058_RS02160 at 268.578 kb on + strand, within HMPREF1058_RS02160 at 268.578 kb on + strand, within HMPREF1058_RS02160 at 268.578 kb on + strand, within HMPREF1058_RS02160 at 268.578 kb on + strand, within HMPREF1058_RS02160 at 268.579 kb on - strand, within HMPREF1058_RS02160 at 268.579 kb on - strand, within HMPREF1058_RS02160 at 268.678 kb on + strand, within HMPREF1058_RS02160 at 268.702 kb on + strand, within HMPREF1058_RS02160 at 268.704 kb on - strand, within HMPREF1058_RS02160 at 268.813 kb on - strand, within HMPREF1058_RS02160 at 268.813 kb on - strand, within HMPREF1058_RS02160 at 268.844 kb on + strand, within HMPREF1058_RS02160 at 268.844 kb on + strand, within HMPREF1058_RS02160 at 268.887 kb on + strand, within HMPREF1058_RS02160 at 268.920 kb on + strand, within HMPREF1058_RS02160 at 268.921 kb on - strand, within HMPREF1058_RS02160 at 268.980 kb on + strand, within HMPREF1058_RS02160 at 268.980 kb on + strand, within HMPREF1058_RS02160 at 269.030 kb on - strand, within HMPREF1058_RS02160 at 269.049 kb on + strand, within HMPREF1058_RS02160 at 269.049 kb on + strand, within HMPREF1058_RS02160 at 269.059 kb on - strand, within HMPREF1058_RS02160 at 269.059 kb on - strand, within HMPREF1058_RS02160
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 266,183 - -4.6 266,200 + -1.9 266,282 + HMPREF1058_RS02170 0.18 -2.3 266,325 + HMPREF1058_RS02170 0.23 -3.1 266,326 - -0.7 266,348 + HMPREF1058_RS02170 0.26 -2.9 266,353 - HMPREF1058_RS02170 0.27 -3.1 266,353 - HMPREF1058_RS02170 0.27 -1.9 266,353 - HMPREF1058_RS02170 0.27 -5.3 266,356 + HMPREF1058_RS02170 0.27 +0.1 266,356 + HMPREF1058_RS02170 0.27 -0.9 266,357 - HMPREF1058_RS02170 0.27 -0.7 266,357 - HMPREF1058_RS02170 0.27 -4.3 266,450 + HMPREF1058_RS02170 0.38 -1.2 266,478 - HMPREF1058_RS02170 0.41 -2.5 266,576 - HMPREF1058_RS02170 0.52 -1.2 266,638 - HMPREF1058_RS02170 0.59 -3.7 266,650 + HMPREF1058_RS02170 0.61 -0.5 266,651 - HMPREF1058_RS02170 0.61 -1.4 266,651 - HMPREF1058_RS02170 0.61 -0.1 266,651 - HMPREF1058_RS02170 0.61 -2.8 266,670 + HMPREF1058_RS02170 0.63 +0.1 266,671 - HMPREF1058_RS02170 0.63 -2.4 266,733 + HMPREF1058_RS02170 0.70 +0.7 266,843 + HMPREF1058_RS02170 0.83 -3.4 266,846 - HMPREF1058_RS02170 0.83 +1.1 267,021 + -0.7 267,027 - -1.6 267,036 - -1.0 267,105 + -2.8 267,150 - -1.0 267,150 - -1.8 267,166 + -5.7 267,184 + -3.6 267,184 + -3.2 267,184 + -3.4 267,184 + -5.1 267,235 + -2.2 267,236 - -2.9 267,238 + -3.9 267,284 + HMPREF1058_RS02165 0.14 -2.0 267,329 - HMPREF1058_RS02165 0.19 -2.5 267,435 - HMPREF1058_RS02165 0.30 +0.7 267,467 + HMPREF1058_RS02165 0.34 -4.3 267,472 + HMPREF1058_RS02165 0.34 -1.5 267,492 - HMPREF1058_RS02165 0.36 -0.8 267,499 + HMPREF1058_RS02165 0.37 -3.3 267,500 - HMPREF1058_RS02165 0.37 -1.0 267,500 - HMPREF1058_RS02165 0.37 -3.3 267,524 + HMPREF1058_RS02165 0.40 -4.0 267,524 + HMPREF1058_RS02165 0.40 -1.7 267,524 + HMPREF1058_RS02165 0.40 -3.7 267,525 - HMPREF1058_RS02165 0.40 -4.3 267,531 + HMPREF1058_RS02165 0.40 -2.3 267,531 + HMPREF1058_RS02165 0.40 -2.1 267,532 - HMPREF1058_RS02165 0.41 -4.7 267,566 + HMPREF1058_RS02165 0.44 -0.8 267,683 + HMPREF1058_RS02165 0.57 -2.9 267,684 - HMPREF1058_RS02165 0.57 -2.7 267,686 + HMPREF1058_RS02165 0.57 -3.3 267,686 + HMPREF1058_RS02165 0.57 -3.3 267,687 - HMPREF1058_RS02165 0.57 -4.2 267,690 - HMPREF1058_RS02165 0.57 +0.1 267,718 - HMPREF1058_RS02165 0.60 -1.9 267,718 - HMPREF1058_RS02165 0.60 -2.0 267,779 + HMPREF1058_RS02165 0.67 -0.5 267,831 + HMPREF1058_RS02165 0.72 -2.6 267,925 - HMPREF1058_RS02165 0.82 -0.3 267,939 - HMPREF1058_RS02165 0.84 -1.1 268,059 - -2.2 268,079 - -1.2 268,104 - +1.9 268,105 + -0.4 268,294 - -0.5 268,424 - HMPREF1058_RS02160 0.13 -2.9 268,456 - HMPREF1058_RS02160 0.15 -0.8 268,482 - HMPREF1058_RS02160 0.16 +0.6 268,485 + HMPREF1058_RS02160 0.17 -0.4 268,491 + HMPREF1058_RS02160 0.17 +2.0 268,558 + HMPREF1058_RS02160 0.21 +0.2 268,559 - HMPREF1058_RS02160 0.21 +0.5 268,578 + HMPREF1058_RS02160 0.22 +0.6 268,578 + HMPREF1058_RS02160 0.22 +2.0 268,578 + HMPREF1058_RS02160 0.22 -0.8 268,578 + HMPREF1058_RS02160 0.22 -0.4 268,579 - HMPREF1058_RS02160 0.22 +0.6 268,579 - HMPREF1058_RS02160 0.22 +0.4 268,678 + HMPREF1058_RS02160 0.27 -1.6 268,702 + HMPREF1058_RS02160 0.29 -1.9 268,704 - HMPREF1058_RS02160 0.29 +0.8 268,813 - HMPREF1058_RS02160 0.35 -3.9 268,813 - HMPREF1058_RS02160 0.35 +1.4 268,844 + HMPREF1058_RS02160 0.37 +1.1 268,844 + HMPREF1058_RS02160 0.37 -2.0 268,887 + HMPREF1058_RS02160 0.39 -0.9 268,920 + HMPREF1058_RS02160 0.41 +1.7 268,921 - HMPREF1058_RS02160 0.41 -3.0 268,980 + HMPREF1058_RS02160 0.44 +0.8 268,980 + HMPREF1058_RS02160 0.44 +1.3 269,030 - HMPREF1058_RS02160 0.47 +1.0 269,049 + HMPREF1058_RS02160 0.48 -1.1 269,049 + HMPREF1058_RS02160 0.48 +1.0 269,059 - HMPREF1058_RS02160 0.49 +1.9 269,059 - HMPREF1058_RS02160 0.49 +0.7
Or see this region's nucleotide sequence