Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02115

Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02120 and HMPREF1058_RS02115 are separated by 301 nucleotidesHMPREF1058_RS02115 and HMPREF1058_RS02110 are separated by 466 nucleotides HMPREF1058_RS02120: HMPREF1058_RS02120 - PCMD domain-containing protein, at 280,620 to 281,711 _RS02120 HMPREF1058_RS02115: HMPREF1058_RS02115 - NADP-specific glutamate dehydrogenase, at 282,013 to 283,347 _RS02115 HMPREF1058_RS02110: HMPREF1058_RS02110 - NADP-dependent malic enzyme, at 283,814 to 286,099 _RS02110 Position (kb) 282 283 284Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 281.013 kb on - strand, within HMPREF1058_RS02120at 281.013 kb on - strand, within HMPREF1058_RS02120at 281.015 kb on - strand, within HMPREF1058_RS02120at 281.015 kb on - strand, within HMPREF1058_RS02120at 281.067 kb on - strand, within HMPREF1058_RS02120at 281.079 kb on - strand, within HMPREF1058_RS02120at 281.079 kb on - strand, within HMPREF1058_RS02120at 281.157 kb on + strand, within HMPREF1058_RS02120at 281.211 kb on - strand, within HMPREF1058_RS02120at 281.222 kb on + strand, within HMPREF1058_RS02120at 281.223 kb on - strand, within HMPREF1058_RS02120at 281.236 kb on - strand, within HMPREF1058_RS02120at 281.243 kb on + strand, within HMPREF1058_RS02120at 281.251 kb on + strand, within HMPREF1058_RS02120at 281.297 kb on + strand, within HMPREF1058_RS02120at 281.297 kb on + strand, within HMPREF1058_RS02120at 281.308 kb on + strand, within HMPREF1058_RS02120at 281.311 kb on - strand, within HMPREF1058_RS02120at 281.378 kb on + strand, within HMPREF1058_RS02120at 281.378 kb on + strand, within HMPREF1058_RS02120at 281.379 kb on - strand, within HMPREF1058_RS02120at 281.380 kb on + strand, within HMPREF1058_RS02120at 281.380 kb on + strand, within HMPREF1058_RS02120at 281.381 kb on - strand, within HMPREF1058_RS02120at 281.381 kb on - strand, within HMPREF1058_RS02120at 281.430 kb on - strand, within HMPREF1058_RS02120at 281.431 kb on + strand, within HMPREF1058_RS02120at 281.431 kb on + strand, within HMPREF1058_RS02120at 281.554 kb on - strand, within HMPREF1058_RS02120at 281.574 kb on - strand, within HMPREF1058_RS02120at 281.574 kb on - strand, within HMPREF1058_RS02120at 281.574 kb on - strand, within HMPREF1058_RS02120at 281.587 kb on - strand, within HMPREF1058_RS02120at 281.634 kb on - strandat 281.634 kb on - strandat 281.670 kb on + strandat 281.679 kb on + strandat 281.684 kb on + strandat 281.694 kb on + strandat 281.695 kb on - strandat 281.742 kb on + strandat 281.753 kb on + strandat 281.861 kb on - strandat 281.940 kb on + strandat 281.988 kb on + strandat 281.991 kb on - strandat 281.991 kb on - strandat 281.991 kb on - strandat 281.991 kb on - strandat 281.993 kb on + strandat 282.012 kb on - strandat 282.036 kb on + strandat 282.064 kb on + strandat 282.065 kb on - strandat 282.083 kb on + strandat 282.088 kb on + strandat 282.088 kb on + strandat 282.088 kb on + strandat 282.119 kb on - strandat 282.148 kb on - strand, within HMPREF1058_RS02115at 282.230 kb on - strand, within HMPREF1058_RS02115at 282.337 kb on + strand, within HMPREF1058_RS02115at 282.338 kb on - strand, within HMPREF1058_RS02115at 282.446 kb on - strand, within HMPREF1058_RS02115at 282.449 kb on + strand, within HMPREF1058_RS02115at 282.449 kb on + strand, within HMPREF1058_RS02115at 282.554 kb on + strand, within HMPREF1058_RS02115at 282.554 kb on + strand, within HMPREF1058_RS02115at 282.555 kb on - strand, within HMPREF1058_RS02115at 282.560 kb on + strand, within HMPREF1058_RS02115at 282.561 kb on - strand, within HMPREF1058_RS02115at 282.583 kb on - strand, within HMPREF1058_RS02115at 282.587 kb on - strand, within HMPREF1058_RS02115at 282.591 kb on + strand, within HMPREF1058_RS02115at 282.632 kb on - strand, within HMPREF1058_RS02115at 282.710 kb on + strand, within HMPREF1058_RS02115at 282.710 kb on + strand, within HMPREF1058_RS02115at 282.711 kb on - strand, within HMPREF1058_RS02115at 282.832 kb on + strand, within HMPREF1058_RS02115at 282.848 kb on - strand, within HMPREF1058_RS02115at 282.868 kb on + strand, within HMPREF1058_RS02115at 282.869 kb on - strand, within HMPREF1058_RS02115at 283.000 kb on - strand, within HMPREF1058_RS02115at 283.057 kb on + strand, within HMPREF1058_RS02115at 283.108 kb on - strand, within HMPREF1058_RS02115at 283.108 kb on - strand, within HMPREF1058_RS02115at 283.289 kb on + strandat 283.336 kb on - strandat 283.352 kb on + strandat 283.363 kb on - strandat 283.376 kb on - strandat 283.378 kb on + strandat 283.533 kb on + strandat 283.619 kb on - strandat 283.685 kb on + strandat 283.686 kb on - strandat 283.688 kb on + strandat 283.736 kb on - strandat 283.743 kb on + strandat 283.773 kb on - strandat 283.784 kb on + strandat 283.784 kb on + strandat 283.790 kb on + strandat 283.812 kb on - strandat 283.875 kb on - strandat 283.967 kb on - strandat 284.015 kb on + strandat 284.028 kb on - strandat 284.114 kb on + strand, within HMPREF1058_RS02110at 284.115 kb on - strand, within HMPREF1058_RS02110at 284.143 kb on + strand, within HMPREF1058_RS02110at 284.143 kb on + strand, within HMPREF1058_RS02110at 284.144 kb on - strand, within HMPREF1058_RS02110at 284.163 kb on - strand, within HMPREF1058_RS02110at 284.168 kb on - strand, within HMPREF1058_RS02110at 284.185 kb on + strand, within HMPREF1058_RS02110at 284.328 kb on + strand, within HMPREF1058_RS02110at 284.328 kb on + strand, within HMPREF1058_RS02110at 284.328 kb on + strand, within HMPREF1058_RS02110

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
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281,013 - HMPREF1058_RS02120 0.36 -1.9
281,013 - HMPREF1058_RS02120 0.36 +0.9
281,015 - HMPREF1058_RS02120 0.36 +0.7
281,015 - HMPREF1058_RS02120 0.36 +1.5
281,067 - HMPREF1058_RS02120 0.41 +0.3
281,079 - HMPREF1058_RS02120 0.42 +1.3
281,079 - HMPREF1058_RS02120 0.42 -0.4
281,157 + HMPREF1058_RS02120 0.49 -0.2
281,211 - HMPREF1058_RS02120 0.54 +1.6
281,222 + HMPREF1058_RS02120 0.55 +0.1
281,223 - HMPREF1058_RS02120 0.55 +1.3
281,236 - HMPREF1058_RS02120 0.56 -1.9
281,243 + HMPREF1058_RS02120 0.57 +0.8
281,251 + HMPREF1058_RS02120 0.58 -2.1
281,297 + HMPREF1058_RS02120 0.62 +0.7
281,297 + HMPREF1058_RS02120 0.62 +0.3
281,308 + HMPREF1058_RS02120 0.63 +3.3
281,311 - HMPREF1058_RS02120 0.63 +2.1
281,378 + HMPREF1058_RS02120 0.69 -1.6
281,378 + HMPREF1058_RS02120 0.69 +1.7
281,379 - HMPREF1058_RS02120 0.70 +0.3
281,380 + HMPREF1058_RS02120 0.70 -1.8
281,380 + HMPREF1058_RS02120 0.70 -2.9
281,381 - HMPREF1058_RS02120 0.70 -1.9
281,381 - HMPREF1058_RS02120 0.70 -2.1
281,430 - HMPREF1058_RS02120 0.74 -0.5
281,431 + HMPREF1058_RS02120 0.74 -0.2
281,431 + HMPREF1058_RS02120 0.74 -0.1
281,554 - HMPREF1058_RS02120 0.86 +2.7
281,574 - HMPREF1058_RS02120 0.87 -0.9
281,574 - HMPREF1058_RS02120 0.87 -1.6
281,574 - HMPREF1058_RS02120 0.87 +1.0
281,587 - HMPREF1058_RS02120 0.89 -0.3
281,634 - +0.7
281,634 - +1.0
281,670 + -2.1
281,679 + -1.0
281,684 + -0.3
281,694 + +0.1
281,695 - -2.5
281,742 + +0.6
281,753 + +1.1
281,861 - -0.0
281,940 + +0.6
281,988 + +2.7
281,991 - +1.3
281,991 - +1.4
281,991 - +0.8
281,991 - -0.9
281,993 + -1.3
282,012 - +0.3
282,036 + -4.0
282,064 + -3.3
282,065 - -5.6
282,083 + -0.5
282,088 + -0.7
282,088 + -1.9
282,088 + -3.2
282,119 - -1.1
282,148 - HMPREF1058_RS02115 0.10 -4.6
282,230 - HMPREF1058_RS02115 0.16 -6.1
282,337 + HMPREF1058_RS02115 0.24 -3.4
282,338 - HMPREF1058_RS02115 0.24 -4.6
282,446 - HMPREF1058_RS02115 0.32 -2.0
282,449 + HMPREF1058_RS02115 0.33 -3.6
282,449 + HMPREF1058_RS02115 0.33 -1.6
282,554 + HMPREF1058_RS02115 0.41 -2.7
282,554 + HMPREF1058_RS02115 0.41 -2.5
282,555 - HMPREF1058_RS02115 0.41 -4.4
282,560 + HMPREF1058_RS02115 0.41 -1.2
282,561 - HMPREF1058_RS02115 0.41 -2.4
282,583 - HMPREF1058_RS02115 0.43 -3.3
282,587 - HMPREF1058_RS02115 0.43 -0.8
282,591 + HMPREF1058_RS02115 0.43 -3.1
282,632 - HMPREF1058_RS02115 0.46 -6.0
282,710 + HMPREF1058_RS02115 0.52 -1.6
282,710 + HMPREF1058_RS02115 0.52 -2.6
282,711 - HMPREF1058_RS02115 0.52 -3.0
282,832 + HMPREF1058_RS02115 0.61 -2.7
282,848 - HMPREF1058_RS02115 0.63 -4.0
282,868 + HMPREF1058_RS02115 0.64 -4.4
282,869 - HMPREF1058_RS02115 0.64 -2.9
283,000 - HMPREF1058_RS02115 0.74 -2.9
283,057 + HMPREF1058_RS02115 0.78 -1.6
283,108 - HMPREF1058_RS02115 0.82 -4.3
283,108 - HMPREF1058_RS02115 0.82 -5.0
283,289 + -0.7
283,336 - -5.2
283,352 + -2.4
283,363 - -2.1
283,376 - -1.7
283,378 + -2.9
283,533 + -2.4
283,619 - +0.6
283,685 + -0.4
283,686 - +0.5
283,688 + +0.1
283,736 - -0.2
283,743 + -2.6
283,773 - -0.2
283,784 + -1.8
283,784 + -1.1
283,790 + -1.1
283,812 - -2.3
283,875 - -2.7
283,967 - -4.7
284,015 + -4.2
284,028 - -4.7
284,114 + HMPREF1058_RS02110 0.13 -4.8
284,115 - HMPREF1058_RS02110 0.13 -5.7
284,143 + HMPREF1058_RS02110 0.14 -5.3
284,143 + HMPREF1058_RS02110 0.14 -2.7
284,144 - HMPREF1058_RS02110 0.14 -3.9
284,163 - HMPREF1058_RS02110 0.15 -3.2
284,168 - HMPREF1058_RS02110 0.15 -0.9
284,185 + HMPREF1058_RS02110 0.16 -2.3
284,328 + HMPREF1058_RS02110 0.22 -4.6
284,328 + HMPREF1058_RS02110 0.22 -2.4
284,328 + HMPREF1058_RS02110 0.22 -4.3

Or see this region's nucleotide sequence