Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02115 and HMPREF1058_RS02110 are separated by 466 nucleotides HMPREF1058_RS02110 and HMPREF1058_RS02105 are separated by 451 nucleotides
HMPREF1058_RS02115: HMPREF1058_RS02115 - NADP-specific glutamate dehydrogenase, at 282,013 to 283,347
_RS02115
HMPREF1058_RS02110: HMPREF1058_RS02110 - NADP-dependent malic enzyme, at 283,814 to 286,099
_RS02110
HMPREF1058_RS02105: HMPREF1058_RS02105 - efflux RND transporter periplasmic adaptor subunit, at 286,551 to 287,762
_RS02105
Position (kb) 283
284
285
286
287 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 282.832 kb on + strand, within HMPREF1058_RS02115 at 282.848 kb on - strand, within HMPREF1058_RS02115 at 282.868 kb on + strand, within HMPREF1058_RS02115 at 282.869 kb on - strand, within HMPREF1058_RS02115 at 283.000 kb on - strand, within HMPREF1058_RS02115 at 283.057 kb on + strand, within HMPREF1058_RS02115 at 283.108 kb on - strand, within HMPREF1058_RS02115 at 283.108 kb on - strand, within HMPREF1058_RS02115 at 283.289 kb on + strand at 283.336 kb on - strand at 283.352 kb on + strand at 283.363 kb on - strand at 283.376 kb on - strand at 283.378 kb on + strand at 283.533 kb on + strand at 283.619 kb on - strand at 283.685 kb on + strand at 283.686 kb on - strand at 283.688 kb on + strand at 283.736 kb on - strand at 283.743 kb on + strand at 283.773 kb on - strand at 283.784 kb on + strand at 283.784 kb on + strand at 283.790 kb on + strand at 283.812 kb on - strand at 283.875 kb on - strand at 283.967 kb on - strand at 284.015 kb on + strand at 284.028 kb on - strand at 284.114 kb on + strand, within HMPREF1058_RS02110 at 284.115 kb on - strand, within HMPREF1058_RS02110 at 284.143 kb on + strand, within HMPREF1058_RS02110 at 284.143 kb on + strand, within HMPREF1058_RS02110 at 284.144 kb on - strand, within HMPREF1058_RS02110 at 284.163 kb on - strand, within HMPREF1058_RS02110 at 284.168 kb on - strand, within HMPREF1058_RS02110 at 284.185 kb on + strand, within HMPREF1058_RS02110 at 284.328 kb on + strand, within HMPREF1058_RS02110 at 284.328 kb on + strand, within HMPREF1058_RS02110 at 284.328 kb on + strand, within HMPREF1058_RS02110 at 284.428 kb on - strand, within HMPREF1058_RS02110 at 284.435 kb on - strand, within HMPREF1058_RS02110 at 284.438 kb on + strand, within HMPREF1058_RS02110 at 284.438 kb on + strand, within HMPREF1058_RS02110 at 284.439 kb on - strand, within HMPREF1058_RS02110 at 284.684 kb on + strand, within HMPREF1058_RS02110 at 284.687 kb on + strand, within HMPREF1058_RS02110 at 284.687 kb on + strand, within HMPREF1058_RS02110 at 284.766 kb on - strand, within HMPREF1058_RS02110 at 284.857 kb on - strand, within HMPREF1058_RS02110 at 285.103 kb on + strand, within HMPREF1058_RS02110 at 285.125 kb on - strand, within HMPREF1058_RS02110 at 285.140 kb on + strand, within HMPREF1058_RS02110 at 285.145 kb on + strand, within HMPREF1058_RS02110 at 285.188 kb on + strand, within HMPREF1058_RS02110 at 285.189 kb on - strand, within HMPREF1058_RS02110 at 285.358 kb on + strand, within HMPREF1058_RS02110 at 285.359 kb on - strand, within HMPREF1058_RS02110 at 285.359 kb on - strand, within HMPREF1058_RS02110 at 285.359 kb on - strand, within HMPREF1058_RS02110 at 285.363 kb on - strand, within HMPREF1058_RS02110 at 285.409 kb on + strand at 285.444 kb on - strand, within HMPREF1058_RS02110 at 285.473 kb on + strand, within HMPREF1058_RS02110 at 285.480 kb on - strand, within HMPREF1058_RS02110 at 285.813 kb on - strand, within HMPREF1058_RS02110 at 285.855 kb on - strand, within HMPREF1058_RS02110 at 285.855 kb on - strand, within HMPREF1058_RS02110 at 285.893 kb on - strand at 285.902 kb on + strand at 285.919 kb on + strand at 285.920 kb on - strand at 285.922 kb on - strand at 286.112 kb on + strand at 286.114 kb on + strand at 286.122 kb on + strand at 286.309 kb on + strand at 286.359 kb on + strand at 286.395 kb on - strand at 286.502 kb on - strand at 286.527 kb on - strand at 286.547 kb on - strand at 286.568 kb on + strand at 286.571 kb on + strand at 286.726 kb on - strand, within HMPREF1058_RS02105 at 286.894 kb on + strand, within HMPREF1058_RS02105 at 286.895 kb on - strand, within HMPREF1058_RS02105 at 286.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 282,832 + HMPREF1058_RS02115 0.61 -2.7 282,848 - HMPREF1058_RS02115 0.63 -4.0 282,868 + HMPREF1058_RS02115 0.64 -4.4 282,869 - HMPREF1058_RS02115 0.64 -2.9 283,000 - HMPREF1058_RS02115 0.74 -2.9 283,057 + HMPREF1058_RS02115 0.78 -1.6 283,108 - HMPREF1058_RS02115 0.82 -4.3 283,108 - HMPREF1058_RS02115 0.82 -5.0 283,289 + -0.7 283,336 - -5.2 283,352 + -2.4 283,363 - -2.1 283,376 - -1.7 283,378 + -2.9 283,533 + -2.4 283,619 - +0.6 283,685 + -0.4 283,686 - +0.5 283,688 + +0.1 283,736 - -0.2 283,743 + -2.6 283,773 - -0.2 283,784 + -1.8 283,784 + -1.1 283,790 + -1.1 283,812 - -2.3 283,875 - -2.7 283,967 - -4.7 284,015 + -4.2 284,028 - -4.7 284,114 + HMPREF1058_RS02110 0.13 -4.8 284,115 - HMPREF1058_RS02110 0.13 -5.7 284,143 + HMPREF1058_RS02110 0.14 -5.3 284,143 + HMPREF1058_RS02110 0.14 -2.7 284,144 - HMPREF1058_RS02110 0.14 -3.9 284,163 - HMPREF1058_RS02110 0.15 -3.2 284,168 - HMPREF1058_RS02110 0.15 -0.9 284,185 + HMPREF1058_RS02110 0.16 -2.3 284,328 + HMPREF1058_RS02110 0.22 -4.6 284,328 + HMPREF1058_RS02110 0.22 -2.4 284,328 + HMPREF1058_RS02110 0.22 -4.3 284,428 - HMPREF1058_RS02110 0.27 -4.6 284,435 - HMPREF1058_RS02110 0.27 -4.7 284,438 + HMPREF1058_RS02110 0.27 -4.3 284,438 + HMPREF1058_RS02110 0.27 -2.2 284,439 - HMPREF1058_RS02110 0.27 -5.7 284,684 + HMPREF1058_RS02110 0.38 -1.1 284,687 + HMPREF1058_RS02110 0.38 -1.6 284,687 + HMPREF1058_RS02110 0.38 -0.1 284,766 - HMPREF1058_RS02110 0.42 -4.9 284,857 - HMPREF1058_RS02110 0.46 -1.8 285,103 + HMPREF1058_RS02110 0.56 -3.9 285,125 - HMPREF1058_RS02110 0.57 -2.4 285,140 + HMPREF1058_RS02110 0.58 -1.3 285,145 + HMPREF1058_RS02110 0.58 -1.4 285,188 + HMPREF1058_RS02110 0.60 -4.2 285,189 - HMPREF1058_RS02110 0.60 -6.3 285,358 + HMPREF1058_RS02110 0.68 -4.0 285,359 - HMPREF1058_RS02110 0.68 -3.1 285,359 - HMPREF1058_RS02110 0.68 -4.3 285,359 - HMPREF1058_RS02110 0.68 -3.1 285,363 - HMPREF1058_RS02110 0.68 -3.0 285,409 + -0.0 285,444 - HMPREF1058_RS02110 0.71 -3.0 285,473 + HMPREF1058_RS02110 0.73 -2.9 285,480 - HMPREF1058_RS02110 0.73 -2.5 285,813 - HMPREF1058_RS02110 0.87 -1.1 285,855 - HMPREF1058_RS02110 0.89 -5.5 285,855 - HMPREF1058_RS02110 0.89 -3.9 285,893 - -5.0 285,902 + -4.6 285,919 + -3.5 285,920 - -0.9 285,922 - -3.6 286,112 + -3.3 286,114 + -3.8 286,122 + -1.7 286,309 + -2.2 286,359 + +2.7 286,395 - +1.5 286,502 - +0.4 286,527 - -1.8 286,547 - -2.7 286,568 + +0.7 286,571 + -2.9 286,726 - HMPREF1058_RS02105 0.14 -0.2 286,894 + HMPREF1058_RS02105 0.28 -1.8 286,895 - HMPREF1058_RS02105 0.28 -1.6 286,956 + -0.5
Or see this region's nucleotide sequence