Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01670 and HMPREF1058_RS01665 are separated by 23 nucleotides HMPREF1058_RS01665 and HMPREF1058_RS01660 are separated by 109 nucleotides HMPREF1058_RS01660 and HMPREF1058_RS01655 are separated by 3 nucleotides
HMPREF1058_RS01670: HMPREF1058_RS01670 - isoleucine--tRNA ligase, at 70,484 to 73,972
_RS01670
HMPREF1058_RS01665: HMPREF1058_RS01665 - TraR/DksA C4-type zinc finger protein, at 73,996 to 74,376
_RS01665
HMPREF1058_RS01660: HMPREF1058_RS01660 - lipoprotein signal peptidase, at 74,486 to 75,124
_RS01660
HMPREF1058_RS01655: HMPREF1058_RS01655 - DUF4296 domain-containing protein, at 75,128 to 76,102
_RS01655
Position (kb) 73
74
75 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 73.974 kb on + strand at 73.974 kb on + strand at 73.974 kb on + strand at 73.982 kb on + strand at 73.988 kb on + strand at 73.993 kb on + strand at 73.993 kb on + strand at 73.995 kb on + strand at 73.995 kb on + strand at 74.014 kb on + strand at 74.103 kb on + strand, within HMPREF1058_RS01665 at 74.145 kb on + strand, within HMPREF1058_RS01665 at 74.175 kb on + strand, within HMPREF1058_RS01665 at 74.252 kb on + strand, within HMPREF1058_RS01665 at 74.277 kb on + strand, within HMPREF1058_RS01665 at 74.277 kb on + strand, within HMPREF1058_RS01665 at 74.403 kb on + strand at 74.403 kb on + strand at 74.433 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 73,974 + -4.0 73,974 + +0.8 73,974 + -3.5 73,982 + -2.8 73,988 + -3.9 73,993 + -4.1 73,993 + -3.1 73,995 + -0.8 73,995 + -3.7 74,014 + -3.3 74,103 + HMPREF1058_RS01665 0.28 -0.9 74,145 + HMPREF1058_RS01665 0.39 -2.8 74,175 + HMPREF1058_RS01665 0.47 -2.7 74,252 + HMPREF1058_RS01665 0.67 -2.9 74,277 + HMPREF1058_RS01665 0.74 -2.6 74,277 + HMPREF1058_RS01665 0.74 -1.0 74,403 + -1.6 74,403 + -1.3 74,433 + +0.0
Or see this region's nucleotide sequence