Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01220 and HMPREF1058_RS01215 are separated by 10 nucleotides HMPREF1058_RS01215 and HMPREF1058_RS01210 are separated by 2 nucleotides
HMPREF1058_RS01220: HMPREF1058_RS01220 - YjgP/YjgQ family permease, at 176,353 to 177,525
_RS01220
HMPREF1058_RS01215: HMPREF1058_RS01215 - tRNA guanosine(34) transglycosylase Tgt, at 177,536 to 178,666
_RS01215
HMPREF1058_RS01210: HMPREF1058_RS01210 - endopeptidase La, at 178,669 to 181,146
_RS01210
Position (kb) 177
178
179 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 177.729 kb on - strand, within HMPREF1058_RS01215 at 177.729 kb on - strand, within HMPREF1058_RS01215 at 177.729 kb on - strand, within HMPREF1058_RS01215 at 177.863 kb on - strand, within HMPREF1058_RS01215 at 177.867 kb on - strand, within HMPREF1058_RS01215 at 177.897 kb on - strand, within HMPREF1058_RS01215 at 177.897 kb on - strand, within HMPREF1058_RS01215 at 177.897 kb on - strand, within HMPREF1058_RS01215 at 177.973 kb on - strand, within HMPREF1058_RS01215 at 178.089 kb on - strand, within HMPREF1058_RS01215 at 178.101 kb on - strand, within HMPREF1058_RS01215 at 178.223 kb on - strand, within HMPREF1058_RS01215 at 178.247 kb on - strand, within HMPREF1058_RS01215 at 178.314 kb on - strand, within HMPREF1058_RS01215 at 178.316 kb on - strand, within HMPREF1058_RS01215 at 178.316 kb on - strand, within HMPREF1058_RS01215 at 178.316 kb on - strand, within HMPREF1058_RS01215 at 178.470 kb on - strand, within HMPREF1058_RS01215 at 178.474 kb on - strand, within HMPREF1058_RS01215 at 178.483 kb on - strand, within HMPREF1058_RS01215 at 178.483 kb on - strand, within HMPREF1058_RS01215 at 178.646 kb on - strand at 178.646 kb on - strand at 178.646 kb on - strand at 178.648 kb on - strand at 178.754 kb on - strand at 179.080 kb on - strand, within HMPREF1058_RS01210 at 179.080 kb on - strand, within HMPREF1058_RS01210 at 179.090 kb on - strand, within HMPREF1058_RS01210 at 179.153 kb on - strand, within HMPREF1058_RS01210 at 179.204 kb on - strand, within HMPREF1058_RS01210 at 179.289 kb on - strand, within HMPREF1058_RS01210 at 179.304 kb on - strand, within HMPREF1058_RS01210 at 179.330 kb on - strand, within HMPREF1058_RS01210 at 179.330 kb on - strand, within HMPREF1058_RS01210 at 179.411 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.496 kb on - strand, within HMPREF1058_RS01210 at 179.665 kb on - strand, within HMPREF1058_RS01210
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 177,729 - HMPREF1058_RS01215 0.17 -2.7 177,729 - HMPREF1058_RS01215 0.17 +0.0 177,729 - HMPREF1058_RS01215 0.17 -2.3 177,863 - HMPREF1058_RS01215 0.29 -2.0 177,867 - HMPREF1058_RS01215 0.29 -2.0 177,897 - HMPREF1058_RS01215 0.32 -4.3 177,897 - HMPREF1058_RS01215 0.32 -0.8 177,897 - HMPREF1058_RS01215 0.32 -3.8 177,973 - HMPREF1058_RS01215 0.39 -5.5 178,089 - HMPREF1058_RS01215 0.49 -0.5 178,101 - HMPREF1058_RS01215 0.50 -2.6 178,223 - HMPREF1058_RS01215 0.61 -1.1 178,247 - HMPREF1058_RS01215 0.63 -3.7 178,314 - HMPREF1058_RS01215 0.69 -1.8 178,316 - HMPREF1058_RS01215 0.69 -3.2 178,316 - HMPREF1058_RS01215 0.69 -2.6 178,316 - HMPREF1058_RS01215 0.69 -1.3 178,470 - HMPREF1058_RS01215 0.83 -1.8 178,474 - HMPREF1058_RS01215 0.83 -3.5 178,483 - HMPREF1058_RS01215 0.84 -2.2 178,483 - HMPREF1058_RS01215 0.84 -1.4 178,646 - -0.5 178,646 - -1.9 178,646 - -2.4 178,648 - -1.6 178,754 - -2.5 179,080 - HMPREF1058_RS01210 0.17 -3.6 179,080 - HMPREF1058_RS01210 0.17 -2.3 179,090 - HMPREF1058_RS01210 0.17 -2.3 179,153 - HMPREF1058_RS01210 0.20 -4.1 179,204 - HMPREF1058_RS01210 0.22 -0.9 179,289 - HMPREF1058_RS01210 0.25 -1.0 179,304 - HMPREF1058_RS01210 0.26 +0.5 179,330 - HMPREF1058_RS01210 0.27 -3.3 179,330 - HMPREF1058_RS01210 0.27 -2.4 179,411 - HMPREF1058_RS01210 0.30 -0.3 179,464 - HMPREF1058_RS01210 0.32 -1.4 179,464 - +0.8 179,464 - HMPREF1058_RS01210 0.32 -1.8 179,464 - HMPREF1058_RS01210 0.32 -3.8 179,464 - HMPREF1058_RS01210 0.32 -1.9 179,496 - HMPREF1058_RS01210 0.33 -0.9 179,665 - HMPREF1058_RS01210 0.40 -1.6
Or see this region's nucleotide sequence