Experiment: D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01215 and HMPREF1058_RS01210 are separated by 2 nucleotides HMPREF1058_RS01210 and HMPREF1058_RS01205 are separated by 181 nucleotides HMPREF1058_RS01205 and HMPREF1058_RS01200 are separated by 80 nucleotides
HMPREF1058_RS01215: HMPREF1058_RS01215 - tRNA guanosine(34) transglycosylase Tgt, at 177,536 to 178,666
_RS01215
HMPREF1058_RS01210: HMPREF1058_RS01210 - endopeptidase La, at 178,669 to 181,146
_RS01210
HMPREF1058_RS01205: HMPREF1058_RS01205 - methyltransferase, at 181,328 to 182,032
_RS01205
HMPREF1058_RS01200: HMPREF1058_RS01200 - diacylglycerol kinase family lipid kinase, at 182,113 to 183,147
_RS01200
Position (kb) 178
179
180
181
182 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 177.729 kb on - strand, within HMPREF1058_RS01215 at 177.729 kb on - strand, within HMPREF1058_RS01215 at 177.729 kb on - strand, within HMPREF1058_RS01215 at 177.863 kb on - strand, within HMPREF1058_RS01215 at 177.867 kb on - strand, within HMPREF1058_RS01215 at 177.897 kb on - strand, within HMPREF1058_RS01215 at 177.897 kb on - strand, within HMPREF1058_RS01215 at 177.897 kb on - strand, within HMPREF1058_RS01215 at 177.973 kb on - strand, within HMPREF1058_RS01215 at 178.089 kb on - strand, within HMPREF1058_RS01215 at 178.101 kb on - strand, within HMPREF1058_RS01215 at 178.223 kb on - strand, within HMPREF1058_RS01215 at 178.247 kb on - strand, within HMPREF1058_RS01215 at 178.314 kb on - strand, within HMPREF1058_RS01215 at 178.316 kb on - strand, within HMPREF1058_RS01215 at 178.316 kb on - strand, within HMPREF1058_RS01215 at 178.316 kb on - strand, within HMPREF1058_RS01215 at 178.470 kb on - strand, within HMPREF1058_RS01215 at 178.474 kb on - strand, within HMPREF1058_RS01215 at 178.483 kb on - strand, within HMPREF1058_RS01215 at 178.483 kb on - strand, within HMPREF1058_RS01215 at 178.646 kb on - strand at 178.646 kb on - strand at 178.646 kb on - strand at 178.648 kb on - strand at 178.754 kb on - strand at 179.080 kb on - strand, within HMPREF1058_RS01210 at 179.080 kb on - strand, within HMPREF1058_RS01210 at 179.090 kb on - strand, within HMPREF1058_RS01210 at 179.153 kb on - strand, within HMPREF1058_RS01210 at 179.204 kb on - strand, within HMPREF1058_RS01210 at 179.289 kb on - strand, within HMPREF1058_RS01210 at 179.304 kb on - strand, within HMPREF1058_RS01210 at 179.330 kb on - strand, within HMPREF1058_RS01210 at 179.330 kb on - strand, within HMPREF1058_RS01210 at 179.411 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.464 kb on - strand, within HMPREF1058_RS01210 at 179.496 kb on - strand, within HMPREF1058_RS01210 at 179.665 kb on - strand, within HMPREF1058_RS01210 at 179.865 kb on - strand, within HMPREF1058_RS01210 at 179.920 kb on - strand, within HMPREF1058_RS01210 at 179.920 kb on - strand, within HMPREF1058_RS01210 at 179.920 kb on - strand, within HMPREF1058_RS01210 at 179.924 kb on - strand, within HMPREF1058_RS01210 at 179.924 kb on - strand, within HMPREF1058_RS01210 at 179.924 kb on - strand, within HMPREF1058_RS01210 at 179.928 kb on - strand, within HMPREF1058_RS01210 at 179.928 kb on - strand, within HMPREF1058_RS01210 at 180.119 kb on - strand, within HMPREF1058_RS01210 at 180.119 kb on - strand, within HMPREF1058_RS01210 at 180.119 kb on - strand, within HMPREF1058_RS01210 at 180.121 kb on - strand, within HMPREF1058_RS01210 at 180.177 kb on - strand, within HMPREF1058_RS01210 at 180.181 kb on - strand, within HMPREF1058_RS01210 at 180.181 kb on - strand, within HMPREF1058_RS01210 at 180.440 kb on - strand at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand, within HMPREF1058_RS01210 at 180.471 kb on - strand at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.791 kb on - strand, within HMPREF1058_RS01210 at 180.848 kb on - strand, within HMPREF1058_RS01210 at 180.848 kb on - strand, within HMPREF1058_RS01210 at 180.855 kb on - strand, within HMPREF1058_RS01210 at 180.855 kb on - strand, within HMPREF1058_RS01210 at 180.883 kb on - strand, within HMPREF1058_RS01210 at 180.930 kb on - strand at 180.986 kb on - strand at 181.090 kb on - strand at 181.090 kb on - strand at 181.270 kb on + strand at 181.283 kb on + strand at 181.322 kb on + strand at 181.323 kb on - strand at 181.324 kb on + strand at 181.325 kb on - strand at 181.325 kb on - strand at 181.367 kb on + strand at 181.667 kb on + strand, within HMPREF1058_RS01205 at 181.668 kb on - strand, within HMPREF1058_RS01205 at 181.746 kb on + strand, within HMPREF1058_RS01205 at 181.799 kb on - strand, within HMPREF1058_RS01205 at 181.985 kb on - strand at 181.985 kb on - strand at 181.996 kb on + strand at 181.997 kb on - strand at 181.998 kb on + strand at 181.998 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate 10 mM (C) mhCom Varel_Bryant_medium_lowCys Passage4 remove 177,729 - HMPREF1058_RS01215 0.17 -2.7 177,729 - HMPREF1058_RS01215 0.17 +0.0 177,729 - HMPREF1058_RS01215 0.17 -2.3 177,863 - HMPREF1058_RS01215 0.29 -2.0 177,867 - HMPREF1058_RS01215 0.29 -2.0 177,897 - HMPREF1058_RS01215 0.32 -4.3 177,897 - HMPREF1058_RS01215 0.32 -0.8 177,897 - HMPREF1058_RS01215 0.32 -3.8 177,973 - HMPREF1058_RS01215 0.39 -5.5 178,089 - HMPREF1058_RS01215 0.49 -0.5 178,101 - HMPREF1058_RS01215 0.50 -2.6 178,223 - HMPREF1058_RS01215 0.61 -1.1 178,247 - HMPREF1058_RS01215 0.63 -3.7 178,314 - HMPREF1058_RS01215 0.69 -1.8 178,316 - HMPREF1058_RS01215 0.69 -3.2 178,316 - HMPREF1058_RS01215 0.69 -2.6 178,316 - HMPREF1058_RS01215 0.69 -1.3 178,470 - HMPREF1058_RS01215 0.83 -1.8 178,474 - HMPREF1058_RS01215 0.83 -3.5 178,483 - HMPREF1058_RS01215 0.84 -2.2 178,483 - HMPREF1058_RS01215 0.84 -1.4 178,646 - -0.5 178,646 - -1.9 178,646 - -2.4 178,648 - -1.6 178,754 - -2.5 179,080 - HMPREF1058_RS01210 0.17 -3.6 179,080 - HMPREF1058_RS01210 0.17 -2.3 179,090 - HMPREF1058_RS01210 0.17 -2.3 179,153 - HMPREF1058_RS01210 0.20 -4.1 179,204 - HMPREF1058_RS01210 0.22 -0.9 179,289 - HMPREF1058_RS01210 0.25 -1.0 179,304 - HMPREF1058_RS01210 0.26 +0.5 179,330 - HMPREF1058_RS01210 0.27 -3.3 179,330 - HMPREF1058_RS01210 0.27 -2.4 179,411 - HMPREF1058_RS01210 0.30 -0.3 179,464 - HMPREF1058_RS01210 0.32 -1.4 179,464 - +0.8 179,464 - HMPREF1058_RS01210 0.32 -1.8 179,464 - HMPREF1058_RS01210 0.32 -3.8 179,464 - HMPREF1058_RS01210 0.32 -1.9 179,496 - HMPREF1058_RS01210 0.33 -0.9 179,665 - HMPREF1058_RS01210 0.40 -1.6 179,865 - HMPREF1058_RS01210 0.48 -1.3 179,920 - HMPREF1058_RS01210 0.50 -1.1 179,920 - HMPREF1058_RS01210 0.50 -3.1 179,920 - HMPREF1058_RS01210 0.50 -1.7 179,924 - HMPREF1058_RS01210 0.51 -0.8 179,924 - HMPREF1058_RS01210 0.51 +1.2 179,924 - HMPREF1058_RS01210 0.51 -4.2 179,928 - HMPREF1058_RS01210 0.51 -3.4 179,928 - HMPREF1058_RS01210 0.51 -1.8 180,119 - HMPREF1058_RS01210 0.59 -2.0 180,119 - HMPREF1058_RS01210 0.59 -3.6 180,119 - HMPREF1058_RS01210 0.59 -3.1 180,121 - HMPREF1058_RS01210 0.59 +0.2 180,177 - HMPREF1058_RS01210 0.61 -1.9 180,181 - HMPREF1058_RS01210 0.61 -4.0 180,181 - HMPREF1058_RS01210 0.61 -3.8 180,440 - -0.8 180,471 - HMPREF1058_RS01210 0.73 -1.3 180,471 - HMPREF1058_RS01210 0.73 -2.7 180,471 - HMPREF1058_RS01210 0.73 -1.6 180,471 - HMPREF1058_RS01210 0.73 -3.5 180,471 - HMPREF1058_RS01210 0.73 -3.0 180,471 - +0.5 180,791 - HMPREF1058_RS01210 0.86 -1.3 180,791 - HMPREF1058_RS01210 0.86 -0.6 180,791 - HMPREF1058_RS01210 0.86 -0.2 180,848 - HMPREF1058_RS01210 0.88 -3.7 180,848 - HMPREF1058_RS01210 0.88 -0.5 180,855 - HMPREF1058_RS01210 0.88 -3.6 180,855 - HMPREF1058_RS01210 0.88 -3.2 180,883 - HMPREF1058_RS01210 0.89 +0.5 180,930 - -4.1 180,986 - -1.1 181,090 - -2.4 181,090 - -0.2 181,270 + -0.7 181,283 + -1.5 181,322 + -1.7 181,323 - -1.3 181,324 + +0.5 181,325 - -0.2 181,325 - -1.3 181,367 + -0.6 181,667 + HMPREF1058_RS01205 0.48 -0.3 181,668 - HMPREF1058_RS01205 0.48 +0.8 181,746 + HMPREF1058_RS01205 0.59 +0.1 181,799 - HMPREF1058_RS01205 0.67 -0.2 181,985 - -1.1 181,985 - +0.8 181,996 + +0.8 181,997 - +1.0 181,998 + -0.8 181,998 + -1.3
Or see this region's nucleotide sequence