Experiment: Post-colonization (Day 8) - Cage5;Mouse5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0366 and BT0367 are separated by 155 nucleotides BT0367 and BT0368 are separated by 25 nucleotides
BT0366: BT0366 - two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file), at 446,387 to 450,649
BT0366
BT0367: BT0367 - putative endo-arabinase (NCBI ptt file), at 450,805 to 452,346
BT0367
BT0368: BT0368 - alpha-L-arabinofuranosidase A precursor (NCBI ptt file), at 452,372 to 454,354
BT0368
Position (kb) 450
451
452
453 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 449.892 kb on + strand, within BT0366 at 449.957 kb on - strand, within BT0366 at 449.957 kb on - strand, within BT0366 at 450.202 kb on + strand, within BT0366 at 450.202 kb on + strand, within BT0366 at 450.215 kb on - strand, within BT0366 at 450.406 kb on + strand at 450.417 kb on + strand at 450.499 kb on - strand at 450.614 kb on - strand at 450.618 kb on - strand at 450.621 kb on - strand at 450.631 kb on + strand at 450.655 kb on + strand at 450.655 kb on + strand at 450.656 kb on - strand at 450.770 kb on + strand at 450.814 kb on + strand at 451.031 kb on - strand, within BT0367 at 451.167 kb on + strand, within BT0367 at 451.221 kb on + strand, within BT0367 at 451.235 kb on - strand, within BT0367 at 451.248 kb on + strand, within BT0367 at 451.305 kb on + strand, within BT0367 at 451.307 kb on + strand, within BT0367 at 451.366 kb on - strand, within BT0367 at 451.380 kb on + strand, within BT0367 at 451.432 kb on - strand, within BT0367 at 451.553 kb on - strand, within BT0367 at 451.553 kb on - strand, within BT0367 at 451.583 kb on + strand, within BT0367 at 451.613 kb on - strand, within BT0367 at 451.649 kb on - strand, within BT0367 at 451.650 kb on + strand, within BT0367 at 451.881 kb on - strand, within BT0367 at 451.884 kb on + strand, within BT0367 at 451.887 kb on - strand, within BT0367 at 451.940 kb on - strand, within BT0367 at 452.020 kb on + strand, within BT0367 at 452.158 kb on - strand, within BT0367 at 452.354 kb on + strand at 452.409 kb on + strand at 452.495 kb on + strand at 452.658 kb on - strand, within BT0368 at 452.789 kb on - strand, within BT0368 at 452.789 kb on - strand, within BT0368 at 453.192 kb on - strand, within BT0368 at 453.200 kb on - strand, within BT0368
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 8) - Cage5;Mouse5 remove 449,892 + BT0366 0.82 -2.2 449,957 - BT0366 0.84 -1.3 449,957 - BT0366 0.84 -2.0 450,202 + BT0366 0.89 -1.6 450,202 + BT0366 0.89 +1.0 450,215 - BT0366 0.90 -0.0 450,406 + -0.6 450,417 + -0.8 450,499 - -0.8 450,614 - +0.2 450,618 - -1.3 450,621 - -2.3 450,631 + -0.8 450,655 + -1.0 450,655 + +0.4 450,656 - -0.6 450,770 + -0.0 450,814 + -0.6 451,031 - BT0367 0.15 -1.8 451,167 + BT0367 0.23 -0.0 451,221 + BT0367 0.27 -0.6 451,235 - BT0367 0.28 -2.3 451,248 + BT0367 0.29 -1.3 451,305 + BT0367 0.32 -0.6 451,307 + BT0367 0.33 -2.0 451,366 - BT0367 0.36 -2.0 451,380 + BT0367 0.37 -1.3 451,432 - BT0367 0.41 -4.0 451,553 - BT0367 0.49 -1.0 451,553 - BT0367 0.49 -1.8 451,583 + BT0367 0.50 +2.0 451,613 - BT0367 0.52 -2.3 451,649 - BT0367 0.55 -2.2 451,650 + BT0367 0.55 +2.6 451,881 - BT0367 0.70 -1.6 451,884 + BT0367 0.70 -0.6 451,887 - BT0367 0.70 -1.0 451,940 - BT0367 0.74 -1.8 452,020 + BT0367 0.79 -1.0 452,158 - BT0367 0.88 -2.7 452,354 + -1.6 452,409 + +1.4 452,495 + +0.7 452,658 - BT0368 0.14 -1.3 452,789 - BT0368 0.21 -0.2 452,789 - BT0368 0.21 -0.0 453,192 - BT0368 0.41 +1.0 453,200 - BT0368 0.42 +0.3
Or see this region's nucleotide sequence